eloal (LOC108263752)


Basic Information

Item Value
gene id eloal
gene name LOC108263752
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26727249 ~ 26736006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939446.2
ATAAAAATGCCGGCTGTAGTAGGCTGCTTTTCCGCTTGCTGTGCTTCTGCCGGCCGTCATGGCGTCGGCAGACATTAAAAAAGTGCTGGAGCTGAAACTTCAGCTGAAAGAGAGCACCGAAGGACACACGcttgtgaAGACCTTGAAGAAGCTTCAAGAACTGGACATAACCCTAGAAATTCTTGCTGAGACTGGAATTGGTAAAGTGGTAAACTCCTTTCGTAAACATGATGATGCGGGGGAAGTGGCCAAAACATTAGTGCATCGATGGAAAAAACTGGTTCCGAATCCAAGTATTACCCGGCATCATCCTCTGTCGCCAAAGGAACCATCTAAGACTGAAATTCAACAAACAGATCAAGAAGAAAAGAGTCAGGCTTCACAGAATACAGTCTGTCCTGAAAGGAAGCCTAAGAATGAAAACTCAGGCTCAGAACACAAACTTTCAAAGAATGTTGATGGTAAAAGTAAAGTGAAACCAATTGCAAGCAAACTGAAAGATTGCATAAATAATGACAAGAAAGCAGACACAAAGAAAGACTCTGATGTGGGCCTCATATCACAGATTTCAATCACAGGTGGAAAATTAATCCAGCCAAAGGAGAAATCAAACAGCAACTCGCATACAGAGCGAAAAGATGAAGGCAAGCATAAAGTTTCTGATGTAACAAATAAGCATAGGCCTAAAATGTCCATGAAAGGCAAACATAGCTCTTTGAAGGAAAGTGAATtgagtgaagaaaaaaagggacaaaaaaatgagaaaaggaaagaaaaagcagCTGGGATGGAGAAGGACCTTGAGAGCGATGACTCTGAAATGCCCTCCATGTCTTTTGAGGAATACTTGAGTTATGATCTTGAGGCTCCAAAACGGAAGAAGAGATCGTGTGAAAGTAAGAACCCGAAGCGCATTAAGGTTGAGCAAAAACAGGATGACAAAATGCACAACTCCAGCACAAAGTCAGGAAAATCCATAACAGAAGCCCCAACTGCAGTGgTCTCAAAGCGATGTGTGATGGACTTGCTCAATGTGCCATTACCCACAATTTCTCCTGAGTGTGATGATCCTTCTCAATATCAGTACTTTACAGAAAAGAAAGTTGAAGAAAAGGCTGCCGAGGTTTGTGAAGAAGCCCCAGTGTTTACTGGTCAGAGGCTGAATAAGAAGATGCAGGTGTACTCTGGGGCTAAGGTTGTGTATCTTCCAACCATGATGACCTTGTACCAGCAGTGCATCCGAACACTGCAGAACAACATTGATTCGCTTTATGAAATTGGAGGTGTGCCATTTGAAATTTTGGAGCCGGTGCTGGAGCGGTGTACGCCGGAGCAGCTGCTGCGGATTGAAGAATGCAATCCTATGTACATAGGTGTGACGGATCACCTGTGGGAGAGGCACTGCATTAGGGACTTCAGGAATGCCCAGCTAGAGGAGTACGAGTCCTGGAGGGAGATGTATCTCCGGCTATTTGAAGAACGAGAACGCAAATTCCAAGCGCTCACCAAGAGCATTGTCTCTGCTCATTCTGGCAAGCCCAAAGGAAGACAGGTGAAGATGGCGTTTATTCATTCAGCTGCCAAGCCGCCTAGAAACGTACGCATCCAGCAGGAACTCCATGGCACAGCAGGCCCTGGGCTCCCTCATGCCGTAGACAAGCTCAGTGGAAGAATTACCGAAAGTAGAGGTAGACCAGGCTTCACTGAGCCTCCTAAGCCTCTTAACACTGGATCAGGAGCCAGCCAGCCCCAAGACCCACGAAGGATTAGACGAGTGGCACCAATGATGGCCAAGTCTCTGAAAGCCTTTAAGAAGCAGTTTGGACGCAGATGAAGGAAGAAGGATTGCGTATAAATACTTATAAACCCATCTGAACTATTGTAAGGTACTTTAATTTTGTCTTGATTTAAGAGATTAtgtgctgctcttttttttttcttttttttttttt

Function

NR:

description
elongin-A-like

GO: NA

KEGG:

id description
K15076 ELOA, TCEB3; elongin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939446.2 True 1952 mRNA 0.44 12 26727249 26736006

Neighbor

gene id symbol gene type direction distance location
fbxo9 fbxo9,LOC107712342,LOC107751337 coding upstream 42741 26670892 ~ 26684508 (+)
LOC113542124 LOC108263832 coding upstream 92036 26631565 ~ 26635213 (+)
fgfr2 fgfr2 coding upstream 438347 26250139 ~ 26288902 (+)
LOC113542099 ate1 coding upstream 524690 26113645 ~ 26202559 (+)
slc29a1a LOC100304808,LOC108430281,LOC107655740 coding upstream 663337 26016620 ~ 26063912 (+)
lrrc1 lrrc1 coding downstream 19654 26755660 ~ 26798512 (+)
LOC117596838 NA coding downstream 67189 26803195 ~ 26809508 (+)
mlip mlip coding downstream 94218 26830224 ~ 26865137 (+)
fam83b fam83b coding downstream 137222 26873228 ~ 26887079 (+)
hcrtr2 hcrtr2 coding downstream 169491 26905497 ~ 26923251 (+)
G53092 NA non-coding upstream 174097 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 174527 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 174964 26552075 ~ 26552285 (+)
G53083 NA non-coding upstream 188729 26538234 ~ 26538520 (+)
G53082 NA non-coding upstream 189782 26537262 ~ 26537467 (+)
G53172 NA non-coding downstream 62692 26798698 ~ 26799518 (+)
G53280 NA non-coding downstream 197932 26933938 ~ 26934265 (+)
G53363 LOC108263596 non-coding downstream 281955 27017961 ~ 27018846 (+)
G53316 NA non-coding downstream 297843 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 319758 27055764 ~ 27056998 (+)
bcl2l11 bcl2l11 other upstream 862903 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 880346 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1132313 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2324795 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2669351 24055154 ~ 24057898 (+)
G53328 NA other downstream 249972 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 461903 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1465029 28201035 ~ 28301823 (+)
G53692 NA other downstream 1711371 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1730082 28466088 ~ 28496606 (+)

Expression


Co-expression Network