LOC113542112


Basic Information

Item Value
gene id LOC113542112
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33286801 ~ 33293343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939447.2
ATACCTTTACCTTTACAGTTAGATTTACACTCTGCAGGTCTGCACTACACGCTGAatctgcactgctgtcagagccgCTCTTCATGATAATCATGTGACAAGAATGTGAAGTGGAATGGATATTAAACAGCACTCACTCAGAGgccatggtgatgatgatgatgatgatgaagaatcCTGTTTCTTCCTTCCTGCAGAAcaacaattacatttctttGAAACTGTCAACATCAATCAACCAGTACAGGTTAAAGGAGATAAATGATCCAAATGCTTTAGAAATCATGATTTTACACAGgcTGCTGATTCACATGCTCAGGAGAGAAACAGGGAGACGCCACAGAACACAGCAGTGCTACCTCTGCCTCATGGCGATGTCCGTGTCTCCTTCATCAGGAAGTAAAGATCTCGGATACAGAAGTGCATCTCTGCTCAGCAAGACTTCATCGTTCTCCATCATGAGTGAGATaaaaaactTCACAGTGTCGTGTTTGGATTTGGACACTTTCCTCTCAGCGAAAGTGAAACTGCGCCAAGAGGGGTTTCTGGAttccaacatgaagaccagttTGGATTTTGCGATCCAGACTCTGGAGAACTTTCCTGTCTCTAAACGTCGTGACGTCTCTCTCACCCTTGAAGGAGAGAGGCAGCTGGTTCGGTTCACTTCAGGGAACCCCGTCCTGCTGTACGTCGTCCGTTTGGGTCAGAAAGGTCCAGAGCTTCATCAGAAAGTCCCGGTTGGGTCTCGTCTCAATCCCTCGTGCCTGAGCGAGTCTCACTTCTTCGGGCATTGCTGCAGAGACGAGCTGGAGAGCTGCATGGATCAAGCGAGGCGGGTTTTAAGCGCGGAAATCGAGGCTAATCCGTCGTCTCAGAGCGAGCTGGAGCTGAGGATCGTGTGTGGTGAGTTTCGGATTACTTACACCACCCAGCAGCCTCAGCGCAGCCTCTTCGTCCGTCCTCACCGCCGACTGTACTTCGGCAAAACGCTGAATCTGGAGAAGCTCCTGGAGACCAAAACACGTTTGGAGAGAAGCGGCGAGATGAAGGAAGGCCTGCTGGCTTGTTTCCAGCACCTGCTGATCAACTACAGTCAGTTTCAGGAGGAAAACATCCGCGTCGTCATCCAGAGCGACGGAGAGCTGATGGAGCTCGTCTGCGGCCGCAAGGACTACCACAGCACGCAGCACTTCCTCTTCACCGATGGACAGAATCGAGCTCACAGCCACAGGGTTCAGGACATGGAGCTGTGGGAGTACGAGTGAAGGTCAAGAGCTGAGAAAGAAACACGCTAAAGAGTCACATCAGTGTGTTGCTAAATACAGATTTAGATACACAATATTGTTAAACATGCAactgacagatagatagatagatagatagatagatagatagaatcaGTAATCAGCAGTTTTggggatgtgggaggaaacatTATTTCACATGGACACAGGAAGGTTCTGCAAAACCCCAGactggctccagatccaccgcaaacctgaccaggatacagcagttactgaaaagttataataataattatatattattaaaaactaGAGATGCcacaataccactttttctcTTCCAATACCAATAACGATCTCACACAGCTTCTTATTTCTCATGAGGTTTCTCTTCAgtctatgtattttttaaaaagtgttgttaaCCACTCAGGGccgagtttcccaaaagcatcatgATGCAAAGGTCGTGATCAaatggtagagcgagcatcacactgaacactctctctctctcctaattAAGATGATCTTAACTGGGAAACTCGGCCCAGTTTTATTCTGCCTCCGACACGCAGCGGATCAATGATTTTGCATATCAGTTAATAAGTGCACTACATCTCTCTGAGTCTTAGGACTAAGATGGCTTAGGATGCACAATTAGAGACATGAGCACTGAGCCGAGGGTGtgaaagtgggcggggctggAGAAGAACCAGGACATCGAATACGTGACTATATGCTACTAGATGTTATTATATGACGCAGATGCagttctttatatatattacttTAATCTTTCCACATGCATTGcataactaatttatttataatataaaatccaCTGTAACTTTATAAACTCTTATTTATGAGAAAGCAGTAgatattctgtaaaaaaaaaaaaaaaagaaagaatacgTAAAGACATTTCCATCTTTAGTGCTAGTGAAACGGTTTTTGCCCTGAGACTATGGGTTgatgatatttttcttttgtgtcagcaaaaaaataaatcatttcacacaaaaa

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939447.2 True 2279 mRNA 0.44 4 33286801 33293343

Neighbor

gene id symbol gene type direction distance location
osr1 osr1,LOC108440809,LOC107548611,LOC107588719,LOC107668777,LOC107757107,LOC107675531 coding downstream 182558 33095656 ~ 33104243 (-)
rdh14a rdh14,LOC105895584,LOC104955673 coding downstream 418446 32865245 ~ 32868355 (-)
mtres1 c3h6orf203 coding downstream 522457 32759671 ~ 32764344 (-)
sobpa sobp,LOC107706905,LOC107588585 coding downstream 576590 32669506 ~ 32710211 (-)
arg2 arg2 coding downstream 751182 32525404 ~ 32535619 (-)
hif1aa hif1a coding upstream 12969 33306312 ~ 33321663 (-)
prkcha prkch,LOC107707065,LOC107675581,LOC107757130 coding upstream 35662 33329005 ~ 33336795 (-)
dhrs7 dhrs7 coding upstream 63687 33357030 ~ 33361865 (-)
six1a six1,six1b,LOC108263091,LOC108414064,LOC108257556,LOC107697302,LOC107589069,LOC108434988 coding upstream 91771 33385114 ~ 33387819 (-)
six4a NA coding upstream 96150 33389493 ~ 33403724 (-)
G57275 syt14 non-coding downstream 29009 33257229 ~ 33257792 (-)
G57267 NA non-coding downstream 51089 33234666 ~ 33235712 (-)
G57215 NA non-coding downstream 218116 33067534 ~ 33068685 (-)
G57169 NA non-coding downstream 486329 32799111 ~ 32800472 (-)
G57126 NA non-coding downstream 511204 32729884 ~ 32775597 (-)
G57290 NA non-coding upstream 3476 33296819 ~ 33298313 (-)
G57292 NA non-coding upstream 10227 33303570 ~ 33305518 (-)
G57294 NA non-coding upstream 32737 33326080 ~ 33360691 (-)
G57300 NA non-coding upstream 70261 33363604 ~ 33364547 (-)
G57302 ppm1a,LOC106571506 non-coding upstream 71714 33365057 ~ 33410771 (-)
G57210 NA other downstream 187229 33019278 ~ 33099572 (-)
G57124 pdss2,LOC102782659 other downstream 558060 32715827 ~ 32728741 (-)
slc66a3 pqlc3 other downstream 625189 32653836 ~ 32661612 (-)
ndufaf1 ndufaf1,LOC107588570 other downstream 897657 32374336 ~ 32389144 (-)
tmem39b tmem39b,LOC107675583,LOC107705392 other downstream 932301 32346755 ~ 32354500 (-)
slc38a6 slc38a6 other upstream 44060 33337403 ~ 33344836 (-)
lrrc9 LOC108262921 other upstream 130321 33423664 ~ 33442815 (-)
G57322 NA other upstream 161879 33455222 ~ 33462342 (-)
mycla LOC108263077 other upstream 187005 33480348 ~ 33524819 (-)
trnag-gcc_5 NA other upstream 236584 33529927 ~ 33529997 (-)

Expression


Co-expression Network