olig3 (olig3)


Basic Information

Item Value
gene id olig3
gene name olig3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27274516 ~ 27276329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939449.2
TGTTCAAGCAGCTTTAGGTTTCAGAGGATCCTGGACTGAAGTGTCCCCCCTCCCACGGCGGTGTTACAATGAATATGAATAGCTGCTCCTTTGGTCGATGGGACAGTGAAAGCGCAGCGCCGCGGATAATGGGCACGTCATCCTAACGAGGTCTTTATGAATGGGGGCTTCTTTTGTTCCGGCTTCTCTCAGTCCGCACTATAAATGCCACAGTCCCGCGATCGCTCTGCAAACAGCAGGTTGTTCATCCTCGGAACCAAGTCGCTTTATCAGTTACTGGTAACAGAACTCACTACGGAAAccgggaaagagaaagagagagagtgagagtacATAACAGGGGAAAGAAAATCAGGTGACAAAACAGGAGTGACTTAAAAGCAgaggcagagtgagagagagacggcCTCCCTACTCGAACCGAGGTGATAAAATGAATTCAGACTCGGGTTCGAGCAGATCCTCCTCGCCGGACGTGGACGAGATGTACGCGCGCAAGACTTCCGCGTCCTCGGGCCAGAACGAGTTCACACCAAAGATGAGCAGCGAGCACTTGTCGCGAGGCGCCGGCGCGGACAGGACCTCAGCGGGCGTCGGCGTCGGAGGCAAGTACAAGCTCAAGAAGCAAGTGACCGAGGAGGAGATCCAGCAGCTGCGCCTGAAGATCAACGGACGAGAGCGCAAACGCATGCACGACCTGAACCTGGCCATGGACGGCCTGAGAGAGGTTATGCCGTACGCGCACGGGCCGTCGGTGAGAAAGTTGTCCAAGATCGCCACGCTGCTGCTGGCGCGGAACTACATCCTAATGCTCAACAGCTCTCTGGACGAGATGAAGAGGCTGGTGGGAGAGATCTACGGCGGCAGCCATCACGCAGCCTTCCACTGCGGCGCCGTGGCGAGCCACGGAGCCGCGCACGCGCCCGGTCCCGCAGCACCCACGGTGCACCACGCGCTGCTCGGAGGCGCTCTAGCACCGCCTACAGCACCTTCCGCCGCCGCGCTGTCTGCCGCTCTGCCCGCGCTCAGCTCCATCCGGGCGCCTCAGACCTTGATGAAAACGCCACCGACGCCTCCGCTCCAAGTTGGCAGCGGCTTCCAGCACTGGGCAGGACTGCCGTGTCCCTGTGCCATCTGCCAGGTGCCGCCACCCGCCGCACACGTGCCCATCGCCTCCACGGGACTCACGAGACTTTCCACCGACAAGGAGGCGATGAAGTGACTATATCCGAATGTCATCATGTAAATTGTATATGGGCTGGACTCGCAGAAAAGTAACTTGCATGATGTGTATTGTTTGTatatttgctcttttgtttctttttcacgAAATCTGAATTCACTCCTTGTAACAAGGATCTCGTCCAACGCATTGTAAATGAATTGCTTGCGCGTACTTAATCCCCTGTAAATAATCCGCAGGCACCAGAAGACTTACGTGTTTAAATGTTAGCTGCGCTTTAAACTGTTGCATTGTTGCTGGGAGGCTGCGAGCAGCACCACTTGTTGATGCTGAAGCTGGGAGGAGAGCTGGATGCGCGTCTTTACGCAGGAGTGCAGAAGGGAGTTCCTGAAGTGCCGTGCGTTCCTTGTAACAAGGATAGTCAAAGTCTCACAGGATCAAATTGTGTGACTGGGTTTTGagtttgaacaaaaaaaaaacgtatgtttttgtttgtttgtttgacgATTTACTGTATGTTACTGCAGTGTGGAAGCAGGTCGACTCGGCGTGATGCTTTGCTGTGCGCGTTCATGTCTTTAATCGGGTTTTTCTGCATGACCATCAGGTTAAAGCAGTTTATATACCTACa

Function

symbol description
olig3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and spinal cord motor neuron cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including brain; neural plate; neural tube; posterior neural keel; and presumptive diencephalon. Orthologous to human OLIG3 (oligodendrocyte transcription factor 3).

NR:

description
PREDICTED: oligodendrocyte transcription factor 3

GO: NA

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939449.2 True 1814 mRNA 0.54 1 27274516 27276329

Neighbor

gene id symbol gene type direction distance location
si:ch73-52p7.1 LOC108262847 coding upstream 16637 27244951 ~ 27257879 (+)
bag2 bag2 coding upstream 61394 27207328 ~ 27213122 (+)
gfral gfral coding upstream 340766 26925234 ~ 26933750 (+)
hcrtr2 hcrtr2 coding upstream 351265 26905497 ~ 26923251 (+)
fam83b fam83b coding upstream 387437 26873228 ~ 26887079 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding downstream 38204 27314533 ~ 27327655 (+)
psmb1 psmb1,LOC107721174,LOC107699161,LOC107597712,LOC107701973 coding downstream 66592 27342921 ~ 27347922 (+)
pno1 pno1,LOC107719218 coding downstream 84513 27360842 ~ 27365471 (+)
plek plek,LOC107720939,LOC107558215,LOC107727890,LOC107561985 coding downstream 109928 27386257 ~ 27393196 (+)
LOC113542114 bfsp1 coding downstream 149513 27425842 ~ 27435989 (+)
LOC117596902 NA non-coding upstream 1339 27261131 ~ 27273177 (+)
G53340 NA non-coding upstream 30358 27242955 ~ 27244158 (+)
G53312 dst non-coding upstream 152577 27111544 ~ 27121939 (+)
LOC117596898 NA non-coding upstream 206336 27058878 ~ 27068180 (+)
LOC113542178 NA non-coding upstream 217518 27055764 ~ 27056998 (+)
G53402 NA non-coding downstream 60718 27337047 ~ 27341096 (+)
LOC113541894 wdr92 non-coding downstream 72581 27348910 ~ 27355673 (+)
LOC113542161 NA non-coding downstream 251536 27527865 ~ 27530466 (+)
G53331 NA non-coding downstream 283843 27560172 ~ 27562940 (+)
G53614 NA non-coding downstream 788314 28064643 ~ 28067481 (+)
znf451 znf451 other upstream 67271 27197909 ~ 27207245 (+)
G53328 NA other upstream 281805 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 1410170 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1427613 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1679580 25562402 ~ 25594936 (+)
pde10a pde10a other downstream 924706 28201035 ~ 28301823 (+)
G53692 NA other downstream 1171048 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1189759 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 2435929 29712258 ~ 29748505 (+)
G55091 NA other downstream 2661219 29937548 ~ 29941181 (+)

Expression


Co-expression Network