lhb (LOC100304481,LOC108425477)


Basic Information

Item Value
gene id lhb
gene name LOC100304481,LOC108425477
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26629250 ~ 26629878 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939462.1
ATGTCCGTGTCAccttcctcttttcttctcctaTGTTTCTTTATCAACTTCTTCTCCCCTGCTCAAAGCTACCTTCTAACACACTGTGAACCTGTTAATGAGACCGTTTCTGTGGAGAAAGATGGCTGCCCCAAATGCCTTGTGTTTCAAACCACCATCTGCAGCGGACACTGCTTCACCAAGGAACCTGTGTACAAGAGCCCATTCTCTTCCATCTATCAGCATGTGTGCACCTACAGAGACGTTCGCTATGAAACTGTTCGCCTGCCGGACTGTCGTCCTGGTGTGGATCCCCACGTCACATATCCTGTCGCACTAAGCTGTGAGTGCAGCTTGTGCACCATGGACACCTCAGACTGTACCATCGAGAGCCTGAAACCGGATTTCTGTATGACACAGAAAGAGTTTATCCTGGACTACTGAA

Function

NR:

description
PREDICTED: gonadotropin subunit beta-2 isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K08521 LHB; lutropin subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939462.1 True 424 mRNA 0.49 2 26629250 26629878

Neighbor

gene id symbol gene type direction distance location
plpp4 plpp4 coding downstream 8264 26529006 ~ 26620986 (-)
wdr11 wdr11,LOC102787883 coding downstream 161869 26366178 ~ 26467381 (-)
LOC117596837 NA coding downstream 278099 26350129 ~ 26351151 (-)
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding downstream 518841 26076592 ~ 26110409 (-)
LOC113541884 s39a9 coding downstream 555496 26066974 ~ 26073754 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding upstream 9671 26639549 ~ 26668018 (-)
elovl5 elovl5 coding upstream 57247 26687125 ~ 26706755 (-)
gclc gclc,LOC107664701,LOC107712340 coding upstream 78641 26708519 ~ 26719590 (-)
klhl31 klhl31,LOC107664702,LOC107597701,LOC107688788 coding upstream 90941 26720819 ~ 26725438 (-)
bmp5 bmp5,LOC107712332 coding upstream 329226 26959104 ~ 26969207 (-)
G53183 NA non-coding downstream 81741 26547296 ~ 26547509 (-)
G53182 NA non-coding downstream 86028 26542964 ~ 26543222 (-)
G53181 NA non-coding downstream 89454 26539529 ~ 26539796 (-)
G53179 NA non-coding downstream 93956 26535083 ~ 26535294 (-)
G53178 NA non-coding downstream 94227 26534807 ~ 26535023 (-)
G53210 NA non-coding upstream 38735 26668613 ~ 26668821 (-)
G53204 NA non-coding upstream 77824 26707702 ~ 26708397 (-)
G53216 NA non-coding upstream 90198 26720076 ~ 26720660 (-)
LOC113542110 NA non-coding upstream 108665 26738543 ~ 26741519 (-)
G53250 NA non-coding upstream 168801 26798679 ~ 26799608 (-)
LOC113542183 NA other downstream 719131 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1893362 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1977403 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2496767 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2589150 24016896 ~ 24040100 (-)
dst dst other upstream 428019 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 907891 27537769 ~ 27541331 (-)
G54269 NA other upstream 1803342 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3249417 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3481953 30111831 ~ 30122822 (-)

Expression


Co-expression Network