vip (vip,LOC108262931,LOC107735294)


Basic Information

Item Value
gene id vip
gene name vip,LOC108262931,LOC107735294
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25982599 ~ 25987144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939464.2
TAAAACGAGGCGAGGTGGGTGAGGCCATTCAAAGAGGCACCAGACGCAGAGGAAAGACGCCAGGAGTCTTTTACAGCGAACTTCTTTGAGATTAGAAATCACCTGTTTCAGCACCACGGTCAGCGCTCCAAGAGGGGCCACACGCTCATCTCCAACAACCTGAGCACATGTTTAAGGCGATGTTACATAGGAGCGCCTCTCAGCTGCTGTTCCTCGTAGCCATCTGCGGCGTCTTTTACACGCGGACTCTCAGTTTGCCGCTCGCCACTACAcgAGCTACTCGACACGCAGACGGTCTGTTTACCAGCGGCTACAGCAAACTGCTGGGCCAACTGTCAGCCAGACGCTACCTGGAGTCTCTGATTGGGAAACGTGTCAGTGATGAACTGGTGGAAGGACAGATGCCAGTGAAGCGTCACTCCGACGCGATTTTCACAGATAACTACAGTCGCTTCCGCAAGCAAATGGCCGTGAAAAAGTACCTGAACTCTGTCTTAACAGGAAAGCGGAGCCTAGAAGATCCTGCCAGTGAGCAGGATGATTCCACTGGCGGAGAAACCTCCTACCGGGAGAGATATGATGATATAAGTGTAGATGAGCTTCTAAATCATATACCAATGCCACTCTGAAGACCACATGATTATCAGTGACTGTAATAGACATTCCATATACAGAGTATAGTAAAGGATAGCAGCATTTAATTTTGAAACAATGTTTCtcaacataaaaaatacataaaatgtggTTACCTATAAAGTAAACgtttacactgtatataataagTACACTTTAAAAGATGTTGacctgaaggtgtgtgtgtgtgtgtgtgtatgtagtgagTTTTGGCCCAGAAACAGACACATTCCTTCTATGTTCTCTGTAAGTAgtagattaattaaaaaatgcattgaaATAAGTTCATAGACTGGCATAGTACAATCAGAGAACAAGAATTTGGACCCGAAGACCACAAGCAGAGCATCAACTAGATCCCAGCGGTATTGTATTAGATTGGAGCAATGAGCGATTATGTAATATGGACTGATCTCAATGAATTTTGtaaatcagaataattttataaGAATCTATTGCTGTTGCTTCTCTGTTGGTTCTCAAGAAAAGGGAA

Function

symbol description
vip Enables hormone activity. Acts upstream of or within adenylate cyclase-modulating G protein-coupled receptor signaling pathway and phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in neuron projection and perikaryon. Is expressed in several structures, including brain; eye; gut; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in pulmonary sarcoidosis. Orthologous to human VIP (vasoactive intestinal peptide).

NR:

description
VIP peptides-like

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05264 VIP; vasoactive intestinal peptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939464.2 True 1126 mRNA 0.44 6 25982599 25987144

Neighbor

gene id symbol gene type direction distance location
tmem87b tmem87b,LOC107688162,LOC107597636,LOC107585411 coding upstream 236709 25730463 ~ 25745890 (+)
LOC113541966 fbln7,LOC107679196,LOC107754577,LOC107733340,LOC107585467 coding upstream 257329 25697860 ~ 25725270 (+)
LOC117596833 NA coding upstream 296818 25676862 ~ 25685781 (+)
itga9 itga9,LOC107679186,LOC107688464,LOC107585444 coding upstream 310595 25597285 ~ 25672004 (+)
kcnk12 LOC108430255,LOC107679129,LOC107688640,LOC107585442 coding upstream 444274 25515217 ~ 25538325 (+)
slc29a1a LOC100304808,LOC108430281,LOC107655740 coding downstream 29476 26016620 ~ 26063912 (+)
LOC113542099 ate1 coding downstream 126501 26113645 ~ 26202559 (+)
fgfr2 fgfr2 coding downstream 262995 26250139 ~ 26288902 (+)
LOC113542124 LOC108263832 coding downstream 644421 26631565 ~ 26635213 (+)
fbxo9 fbxo9,LOC107712342,LOC107751337 coding downstream 683748 26670892 ~ 26684508 (+)
G52683 NA non-coding upstream 93817 25888551 ~ 25888782 (+)
G52483 NA non-coding upstream 498408 25483803 ~ 25484191 (+)
G52456 NA non-coding upstream 601824 25378353 ~ 25380775 (+)
G52406 NA non-coding upstream 689328 25293033 ~ 25293271 (+)
LOC113542024 NA non-coding upstream 694012 25265631 ~ 25288587 (+)
G52873 NA non-coding downstream 234169 26221313 ~ 26221544 (+)
G52858 NA non-coding downstream 269498 26256642 ~ 26344302 (+)
G52884 NA non-coding downstream 376295 26363439 ~ 26363733 (+)
G52885 wdr11 non-coding downstream 379048 26366192 ~ 26369260 (+)
G53080 NA non-coding downstream 541263 26528407 ~ 26533502 (+)
bcl2l11 bcl2l11 other upstream 118253 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 135696 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 387663 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 1580145 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 1924701 24055154 ~ 24057898 (+)
G53328 NA other downstream 998834 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 1210765 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 2213891 28201035 ~ 28301823 (+)
G53692 NA other downstream 2460233 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 2478944 28466088 ~ 28496606 (+)

Expression


Co-expression Network