lrrc1 (lrrc1)


Basic Information

Item Value
gene id lrrc1
gene name lrrc1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26755660 ~ 26798512 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939470.2
AAGTGGGAGGGGCTCCGGGAAAGCGTGACGCCAGCCTGGAATGAAGGAGTgagttgagtgagtgagtgttttcCGGGTCAGAAAGTGGACTAAGAGGAAATAAACGAGGAGCAGCGCAGTAGACATGTACAACCCGAACAAAGTATGGAAAGTTTGTCAACATTCCAGCTAAGACGAGTCGAGAGCGATGATGGAAGGGGCGATGTTTGAGAAGTGGACTTGCTCTGTGGTTAGtgcatgagagtgtgtgtgtgtgtgtgtgtgtgtgtggtgaagccCGGCCCGGGACGTGCTCCATCTCCTGCGTTTTGAAATCTGAGCTGACGATATTAATCGGAAGTTGCAGGCGCTTTGATCTGAATCGCTGTGCGTGACAGCGTCGTGTTGTGACTATCGCGCCTTGTGGACGATCCGATCCGATCCGATCCGGGATGTTTCACTGTATCCCACTGTGGCGGTGTAACCGTCATGTCGAGACCATTGACCGGCGCCACTGTTCACTGCTCTATGTCCCAGACGAGATCTATCGCTACAGCCGCAGCTTGGAAGAACTTCTGCTGGACGCGAACCAACTCCGAGACTTACCCAAGCAATTCTTCCAGCTGGTGAAGTTAAGAAAGCTGGGCCTGAGCGACAACGAGATCCAGAGACTTCCTCCAGAGATAGCCAACTTCATGCAGCTTGTAGAGCTCGACGTCTCGCGCAACGACATTATCGAGATTCCTGAAAACATTTCCTATTGCAAAGCCCTTCAAGTAGCAGACTTTAGTGGCAACCCTTTGACAAGATTGCCAGAGAGCTTTGCTGAATTGCGGAACCTCACATGCCTTTCCATCAATGACATTTCTTTACAAGCGCTTCCTGATAACATTGGAAAcctTATTAACTTGGTATCACTGGAACTCCGAGAGAACATGCTAACATATTTACCCGAATCTCTTTCCCAGCTACACAGACTGGAAGAACTCGATGTAGGGAACAACGAGCTGTATAATCTGCCCGAGACAATAGGATGCCTTGTGAGCTTGAAGGACCTGTGGCTGGATGGAAACCAGCTGATTGAATTACCAAAGGAGCTAGGCAGCATGAAGAACCTGCTCTGTCTGGATGTGTCGGAGAACAAGTTGGAGCACCTCCCAGAGGAAATGGCTGGCATGCTCTCGCTCACCGACCTGCTGGTGTCCCAGAACCTCATCGATGCCCTGCCAGAGGGCATAGGAAAATTAAAACGACTCTCCATTCTGAAAGCGGATCAGAACCGCCTGGTCCATCTGCCCGAGAGCATCGGTGACTGCGAAAGTCTTACAGAACTGGTGCTGACTGAGAACCAGCTGCTGAGTTTGCCAAGAAGTATTGGAAAGCTTAAGAAACTCTCAAACTTCAACTGTGACAGGAATCGCCTGGTATCTTTACCCAGAGAGATAGGAGGCTGCAGCAGTCtgaatgtgctgtgtgtgagagacaacCGTCTGACCCGCATCCCTGCCGAACTTTCACAGGCTACAGaactgcatgtttttgatgTGTCTGGAAACAGGTTGACTCATCTGCCCATGTCTCTTACCACGCTGAAGCTCAAGGCTCTCTGGTTGTCGGAGAATCAGTCTCAGCCGTTGCTCACGTTCCAGACAGATGTGGATCCTGACACAGGGGAGAAAGTGCTCATCTGTGTGCTTCTGCCTCAGCAGCCTTGCGAGAGTGAAAAAGgctCCGATAACCTGGCACGCTGCGGCGCTCTGGAGAGTCTAGTGAACGACATGGCTGATGACACGTGGGACACCAGAGCCATGAATAGAATGAGCACCATCCGATTCCTagatgacgacgatgatgatgatgatgaaaagGGAACGCTGCTGCGACGGGCCACGCCGCACCCCGGAGAGCTGAGGACCATGAAGAAGGTGGTTGAGAATCTACGCAACGATCTGAATGCTGCCAAAGGCCTGGACTCCAACAAAAACGAGGTCAATAACACTGTGGACCGAGTGACTACATCTGTGTGACCACTTTTTACCTCCGAGATGGCCCAGTCCCCATCGTGTCTTCCCACATGCACCTCATCCAGCCTTCTCCCTGTGCTTTTTCTCCCTTGAATGTGACTATCCTTTCTCTGTGCTGGGTCTGTCCTGttctctccttcatctcctCAGATCCTGAATCAGGGAAAGACCACCATGATAGgtgccttcttttttttttttttccctttttacaATGTTCAGAGCAATAATCCTTGGAATGCAcaatttcttttattccttttgaTTTTACAATCCAGtcctttttaaagctttttttttttttcgaacaCTCAAA

Function

symbol description
lrrc1 Orthologous to human LRRC1 (leucine rich repeat containing 1).

NR:

description
leucine-rich repeat-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939470.2 True 2319 mRNA 0.50 14 26755660 26798512

Neighbor

gene id symbol gene type direction distance location
eloal LOC108263752 coding upstream 19654 26727249 ~ 26736006 (+)
fbxo9 fbxo9,LOC107712342,LOC107751337 coding upstream 71152 26670892 ~ 26684508 (+)
LOC113542124 LOC108263832 coding upstream 120447 26631565 ~ 26635213 (+)
fgfr2 fgfr2 coding upstream 466758 26250139 ~ 26288902 (+)
LOC113542099 ate1 coding upstream 553101 26113645 ~ 26202559 (+)
LOC117596838 NA coding downstream 4683 26803195 ~ 26809508 (+)
mlip mlip coding downstream 31712 26830224 ~ 26865137 (+)
fam83b fam83b coding downstream 74716 26873228 ~ 26887079 (+)
hcrtr2 hcrtr2 coding downstream 106985 26905497 ~ 26923251 (+)
gfral gfral coding downstream 126722 26925234 ~ 26933750 (+)
G53092 NA non-coding upstream 202508 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 202938 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 203375 26552075 ~ 26552285 (+)
G53083 NA non-coding upstream 217140 26538234 ~ 26538520 (+)
G53082 NA non-coding upstream 218193 26537262 ~ 26537467 (+)
G53172 NA non-coding downstream 186 26798698 ~ 26799518 (+)
G53280 NA non-coding downstream 135426 26933938 ~ 26934265 (+)
G53363 LOC108263596 non-coding downstream 219449 27017961 ~ 27018846 (+)
G53316 NA non-coding downstream 235337 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 257252 27055764 ~ 27056998 (+)
bcl2l11 bcl2l11 other upstream 891314 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 908757 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1160724 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2353206 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2697762 24055154 ~ 24057898 (+)
G53328 NA other downstream 187466 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 399397 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1402523 28201035 ~ 28301823 (+)
G53692 NA other downstream 1648865 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1667576 28466088 ~ 28496606 (+)

Expression


Co-expression Network