fbxo9 (fbxo9,LOC107712342,LOC107751337)


Basic Information

Item Value
gene id fbxo9
gene name fbxo9,LOC107712342,LOC107751337
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26670892 ~ 26684508 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939472.2
CTTCACACGCCTGCCTGAGCTGTGGAAAGCGCCACTTAATGCGACCTTGCTCATGCTACATTTCTGCCTGACGGTGAACGGGATGGCTGCCGTGTGGCGCGCTCGTAAATTTGCTCGCTGCGTCGTCCGTTTCTCTGACCGTGAtctgtaaacaaaaacacaccgaTACTGCACGCGCCACAACAAGACGTCAAAGATACGCCAACATGGCTGAACAGAGCAACCAAAATGCCGATGCTGGTTCTGTCGAAGAAGGGGAAGATGAAAATTCTGAAGACTCTAATCTGCAGCTGGAGCTTAGTGCTTTTAGGGCTCAGTGGATGTCAGAGCTGCGTCCTGGCTCTGGTATTAAGACAGGACTGTCCAAAGCTGCTGAACTGAAGAAGACACAGGAGCTGGCCAGAGAGGAAAAAGCCCGAGAGCTGTTCCTGAAGGCTGTTGAGGAGGAGCAAAATGGAGCTGTTTACGAAGCCATCAAGTACTACAAGAGTGCAATGCAGCTTGTCCCTGACATTGAGTTTAAGATCAACTACAGCAGATCTCCTGATCCAGACCGAGTGGGTGGGACCTACCTGGAGGAGAACGAAAACGATGGCGAGATTGATGATCTCCTTGCATACCTCCAACAGCAGCTGACTGTAGAGCATTCCTCCCAGAAGATTTGTCAACCTGAGGTGGAGACATCGCAGGTGCATATTTCAGTGTTGCCACTAGAGGTGCTGATGTATATCTTCCGCTGGGTGGTGAGCTCGGATTTAGATATGCGGGCATTAGAGCAGCTTTCCCTTGTCTGCAGGGGTTTCTACATCTGTGCAAGGGACCCTGAGATTTGGCGCTCGGCCTGTTTGAGGGTGTGGGGCCGGAGCTGCACCAAATTGCTGCCGTTCACCTCGTGGAGGGACATGTTCTTAGAGCGGCCACGTGTCCGCTATGATGGTGTTTATATCAGTAAAACATCATACATCCGTCAGGGAGAGGAGTCTCTGGACGGCTTCTACAGAGCGTGGCACCAGGTGGACTATTACAGgtaCCTACGCTTCTTTCCCGATGGTCAAGTAATGATGTTGACCACGCCTGAGGAGCCTCTGGCCACGGTTCCACGTCTGCGCAGCAAGAACACAAGGATGGACTCCATCATGATCGGCCACTACCGGCTGTCCCAGGACACGGACAATCAAACCAAAGTTTATGTTGTTGTATCCAAGAGAAAAGACGAGAAGGCGCCCGAGTACCAGAGGAGTCGGTTCTGCAGGCGGTACCCAGCCCCCGAGTCAGAATGCTCCTTCCATGTGGGGCTGCAGCTTTCCTCTGGGGGGCGCCAGCGCTTCAACAAGCTTGTGTGGATCCATCACTCCTGCCACATCACCTATAGaTCAACTGGAGAAACGGTCATCACAGCATTCGACCTTGACAAAATGTATACACCGTTGTATTTTGCCCGAGTTAAGAGCTACACTGCATTCTCAGAGCGCCCCCTGTAGGGCCACAGCAGAGCTGCATGTGGAACGTCAAAGAATAACAAACGGTTTACGCATTTATATCTCCAACAAACATATCACCCCCTTAATCCTCCTGGCTTTGAGCATGAGGctgaatgtaaagaaaaaaaaaaggttgagtGAGGATTTCTGAAAATTCCTTATAGCAACGTAGCAGCGTTACCTTCCAGGTttactgtttgtctgtttgaacTGATCACTGGCTTACTGTTGTAACCGCAGTAGATGTAATGCATAAATGCAGCTGTTTTCTCCTTACTTTTAACCAATGCTGAATGTTTTcacttatatatatttgtggATTTTGGTATGTGTCTACTGAAGACTGGAACAACCAAATAAACATGTTGAAGgtt

Function

symbol description
fbxo9 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in several structures, including alar plate midbrain region; immature eye; musculature system; optic tectum; and pronephric duct. Orthologous to human FBXO9 (F-box protein 9).

NR:

description
F-box only protein 9-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10295 FBXO9; F-box protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939472.2 True 1855 mRNA 0.49 13 26670892 26684508

Neighbor

gene id symbol gene type direction distance location
LOC113542124 LOC108263832 coding upstream 35679 26631565 ~ 26635213 (+)
fgfr2 fgfr2 coding upstream 381990 26250139 ~ 26288902 (+)
LOC113542099 ate1 coding upstream 468333 26113645 ~ 26202559 (+)
slc29a1a LOC100304808,LOC108430281,LOC107655740 coding upstream 606980 26016620 ~ 26063912 (+)
vip vip,LOC108262931,LOC107735294 coding upstream 683748 25982599 ~ 25987144 (+)
eloal LOC108263752 coding downstream 42741 26727249 ~ 26736006 (+)
lrrc1 lrrc1 coding downstream 71152 26755660 ~ 26798512 (+)
LOC117596838 NA coding downstream 118687 26803195 ~ 26809508 (+)
mlip mlip coding downstream 145716 26830224 ~ 26865137 (+)
fam83b fam83b coding downstream 188720 26873228 ~ 26887079 (+)
G53092 NA non-coding upstream 117740 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 118170 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 118607 26552075 ~ 26552285 (+)
G53083 NA non-coding upstream 132372 26538234 ~ 26538520 (+)
G53082 NA non-coding upstream 133425 26537262 ~ 26537467 (+)
G53172 NA non-coding downstream 114190 26798698 ~ 26799518 (+)
G53280 NA non-coding downstream 249430 26933938 ~ 26934265 (+)
G53363 LOC108263596 non-coding downstream 333453 27017961 ~ 27018846 (+)
G53316 NA non-coding downstream 349341 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 371256 27055764 ~ 27056998 (+)
bcl2l11 bcl2l11 other upstream 806546 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 823989 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1075956 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2268438 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2612994 24055154 ~ 24057898 (+)
G53328 NA other downstream 301470 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 513401 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1516527 28201035 ~ 28301823 (+)
G53692 NA other downstream 1762869 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1781580 28466088 ~ 28496606 (+)

Expression


Co-expression Network