pcsk2 (pcsk2,LOC107701967,LOC107699156)


Basic Information

Item Value
gene id pcsk2
gene name pcsk2,LOC107701967,LOC107699156
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27437145 ~ 27473721 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939479.2
ATTATAGATGAAAGCGCTCGAGCTGAGAAATGTAGATTGGGTCCCGCGCGCGCGCACCTCAGCTCGCGCAGCGCACGACCGACGTTCCGACTCTTTCCAGCCTCAACAATCCACAGGACGAGGAGATGAATCCTGACAAACCCTGATAAAAGTCGTCGTAGGCACCtcgcttttatttaaaacaacaacaaccaaaaacaaccaaaaacaacaataaatcaCTTAAGAACACGGAGACACAGAAGAGGCGCGATGCTCGGAGCCGTGAAATATGGGACAGCAGtcgttgtgttgttgtttactgCATTGCTCCTCTTCACCGGAGCCACCGAGGACGGAATTTTTACAAAGCATCTTTTAGTGCAATTGCAAGAGGGAGGGAATGAAGATGCTCACCAACTTGCACTTGAGTATGGCTTTGGGAGTGCCAGACAGCTTCCCTTTGGCGAGAGACTTTTTCATTTCTACCCCCGGGACACTCCTAAAACAAAGAGGAAACGCAGCCTTCGTCGCCGTCAGCGTCTGGATAAGGACCGACGGGTAAAAAAAGTGATAGTACAGGAGGGATTCGAACGTCAGAAGAGAGGCTATCGAGACATCAATGACTTTGACAATGGTTTGAATGATCCACTTTTTACCAAGCAGTGGTACCTTATAAATACAGGGCAGGCAGACGGCACTCCCGGGCTGGACCTCAATGTGGCTGAGGCCTGGAAGATGGGCTACACTGGAAAAGGAGTGACCATCGCCATCATGGATGATGGTATCGATTATTTACACCCAGACCTTGCTTCCAATTACaATGCAGAGGCCAGCTATGACTTCAGCAGCAATGACCCATACCCATACCCTCGCTACACGGATGATTGGTTTAACAGCCATGGGACCAGATGTGCCGGAGAGGTGTCTGCAGTGGCTAACAACAACATCTGTGGCGTAGGAGTGGCCTACAATTCCAAAGTGGCGGGCATCCGAATGTTGGACCAGCCATTCATGACGGACATCATTGAAGCCTCCTCCATCAGTCACATGCCGCAGGTTATTGACATCTACAGCGCTAGCTGGGGTCCCACTGATGATGGCAAGACGGTGGATGGACCTCGTGAGCTAACCCTTCAGGCCATGGCAGATGGCGTTAACAAGGGCCGAGGGGGGAAAGGCAGTATCTATGTGTGGGCTTCGGGGGATGGTGGTGGCTATGATGACTGCAACTGTGATGGCTATGCCTCCAGCATGTGGACCATCTCCATTAACTCGGCCATTAATGATGGACGCACAGCTTTGTACGACGAGAGCTGCTCCTCCACACTCGCCTCGACATTCAGCAACGGCCGCAAGAGGAACCCTGAGGCAGGAGTGgccACCACAGATCTGTATGGAAACTGTACGTTGCGTCATTCAGGCACATCAGCTGCTGCTCCCGAGGCTGCTGGTGTGTTTGCCTTGGCATTAGAAGCCAAtCCAAACCTGACCTGGAGGGACATGCAGCACCTCACAGTACTCACTTCAAAACGGAATAAACTCCATGATGAGGTACACCAGTGGAGGAGAAATGGTGTGGGCTTGGAGTTCAACCATCTGTTTGGCTACGGTGTGCTGGATGCCGGTGCCATGGTCAGTCTGGCGCGTGACTGGAAGACTGTGCCTGAGCGTTTTCACTGTGTGGCCGGATCAGTGCAGGAGACACACAAGATCCAATCAGGTGCCAAGCTAGCACTCACCATCACTACAGACGCGTGTCAGGGCCGGGAGAACTTCGTGCGCTATCTGGAGCATGTCCAGGCGGTGGTGACCGTGAATGCGAGCCGGCGCGGCGAGCTCACACTCAACCTGACTTCACCCATGGGCACCAAGTCCATTCTGCTGAGCCGGCGGCCGCGTGACTCCGACTCCACTGTGGGGTTCGACAAGTGGCCTTTCATGAGCACGCACACATGGGGCGAGGACCCTCGTGGCACCTGGAAGCTCGAAGTCGGCTTCAGTGGAGAATCTCCACAGAGCGGCCATCTAAATGAGTGGACCCTCATGCTGCATGGCACGCAGAGTGCACCCTACATAGAGCAAGTGGTCAGGGACTACCAGTCCAAATTAGCCATGTCCAAaaaggaggagctggaggaggagctggatgaagCTGTAGAACGGAGCCTTGAGAGGATGATGAGCAAAAGCAACTAGCCTCAGTCTGAACTGCATGATGCctgccttctctctctttctctccctttttccaTCTCACTTTCCCTCtcagtgtatctctctctctttctctttctctctttcttgctcctgtattttttttctgtggtcaCAAGTTCCCTGTTGAATGATTGTTTCATGTAGGCCcgcataaataaaaaaaaaagtatattctCCAAAATGACCTATTCTACAAGATATTACCTCTTgtattctcttctttttttttttttataatttctagaaaatgtatatacactatatatatatagtctatTAATTTATTGCTTCTCTTGCTGTCTCCCCACCTCTACAACTATTGTACAGTTTGTGACTGTAAATGATTCTCTGTGTTATTCTACCTAAAGACTAGTACCTTGCTAAAAGAGCAGTGACATTGatttctgttatatttttttgaaaagacCTATTTATATCTAAACAGGAGACGTAATGTGTGATCACAGCTTGTGGCCAACAACAAAACCTATTTCACAACCTTCGATATATCTAACAATAAATCTGTTCTGCTGTTTGTTAAA

Function

symbol description
pcsk2 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in peptide hormone processing. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space; membrane; and neuron projection. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in myocardial infarction and type 2 diabetes mellitus. Orthologous to human PCSK2 (proprotein convertase subtilisin/kexin type 2).

NR:

description
neuroendocrine convertase 2-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01360 PCSK2; proprotein convertase subtilisin/kexin type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939479.2 True 2741 mRNA 0.49 12 27437145 27473721

Neighbor

gene id symbol gene type direction distance location
prokr1b prokr1,prokr1b,LOC108263766,LOC108425411,LOC107721082,LOC107699131,LOC107727892,LOC107680161 coding downstream 15991 27412030 ~ 27421154 (-)
cnrip1b NA coding downstream 51634 27382304 ~ 27385511 (-)
ppp3r1a PPP3R1,ppp3r1,LOC108441257,LOC107727894,LOC106024317,LOC107699153 coding downstream 56514 27366318 ~ 27380631 (-)
wdr92 wdr92 coding downstream 76479 27355002 ~ 27360666 (-)
perp perp coding downstream 96028 27337048 ~ 27341117 (-)
LOC113542117 otor coding upstream 27941 27501662 ~ 27504308 (-)
polh polh coding upstream 45148 27518869 ~ 27525942 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 74544 27548265 ~ 27560020 (-)
mcph1 mcph1,LOC107568906 coding upstream 88536 27562257 ~ 27598047 (-)
myom2b myom2 coding upstream 594052 28067773 ~ 28099456 (-)
G53862 NA non-coding downstream 69085 27367361 ~ 27368060 (-)
G53851 tnfaip3,LOC107597710 non-coding downstream 117523 27318088 ~ 27319622 (-)
LOC117596885 NA non-coding downstream 122794 27305874 ~ 27314351 (-)
G53732 NA non-coding downstream 183193 27226345 ~ 27253952 (-)
LOC117596899 NA non-coding downstream 235247 27197359 ~ 27201898 (-)
G53729 NA non-coding upstream 56855 27530576 ~ 27803450 (-)
LOC113542054 NA non-coding upstream 504723 27978444 ~ 28028256 (-)
G54201 NA non-coding upstream 626652 28100373 ~ 28100589 (-)
G54204 NA non-coding upstream 632994 28106715 ~ 28175966 (-)
G54219 NA non-coding upstream 672617 28146338 ~ 28146866 (-)
dst dst other downstream 241190 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 1527026 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 2701257 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2785298 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 3304662 24108351 ~ 24132483 (-)
zgc:163080 tmem14a other upstream 64048 27537769 ~ 27541331 (-)
G54269 NA other upstream 959499 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 2405574 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 2638110 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 2679187 30152908 ~ 30161224 (-)

Expression


Co-expression Network