LOC113542138


Basic Information

Item Value
gene id LOC113542138
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28504100 ~ 28505277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939483.2
TTCATACCACAGGGTTAAGCTCAAAGCTTAGTAATCATGTTTGTAAAGGTTGTAGCTCCACTCCTGGCGGTCTTCTTGGCCGTGGCGAGCGCTGACCTTGTCGGAGCCCCGGTGGATGCAGACATAAACAGCCCAGAAGTCCAGGATGCCCTGCGGTTTGCAGTCGCTCAGTATAATGCAGAGAGTGACTGCATATACACCAGCCAGGTTGTTAAGGTGATCAAGACCCAGGTGCAGGTTGTTTCTGGTTTGAAGTACATCTTCACTGTTGAGATGGCCAAGACTTCCTGCAAAAAAGCGGAACCTGAAAACACGTGTGCCATCAATTCGGACCCAGCAATTGCACAGCCTCATGAATGCAAACTTGCAGTGTGGAGTCAGCCTTGGCTGCACAGCATGATGCTAATTGAGAATACCTGCTAAGAGAGATCACATACTATCCTGAAACCCAGAATCTTTCAAgaaatacctttaaaaatgtGCCTTATTCATCAGGCTGTATTTGGAGATGCTA

Function

GO: NA

KEGG:

id description
K13900 CST4; cystatin-S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939483.2 True 514 mRNA 0.47 3 28504100 28505277

Neighbor

gene id symbol gene type direction distance location
LOC113541930 NA coding downstream 2702 28499606 ~ 28501398 (-)
LOC113542015 NA coding downstream 7498 28494642 ~ 28496602 (-)
LOC113542013 NA coding downstream 18341 28468956 ~ 28485759 (-)
nolc1 nolc1,LOC107717830 coding downstream 57760 28437005 ~ 28446340 (-)
mcu mcu,LOC107660217,LOC107564525,LOC107702682,LOC107754763 coding downstream 115409 28333625 ~ 28388691 (-)
ephx5 ephx1,LOC108426104 coding upstream 10501 28515778 ~ 28520829 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562 coding upstream 105346 28610623 ~ 28620025 (-)
trnae-cuc_11 NA coding upstream 696655 29201932 ~ 29202003 (-)
LOC113541985 NA coding upstream 1177268 29682545 ~ 29684864 (-)
zfyve21 zfyve21,LOC106610961 coding upstream 1181453 29686730 ~ 29695063 (-)
G54327 NA non-coding downstream 6212 28496771 ~ 28497888 (-)
G54324 NA non-coding downstream 18855 28484982 ~ 28485245 (-)
G54320 NA non-coding downstream 33002 28470891 ~ 28471098 (-)
G54273 NA non-coding downstream 74760 28427453 ~ 28429340 (-)
G54306 NA non-coding downstream 137384 28366303 ~ 28366716 (-)
LOC117596864 NA non-coding upstream 498003 29003280 ~ 29008803 (-)
LOC117596831 NA non-coding upstream 572033 29077310 ~ 29081966 (-)
G54775 NA non-coding upstream 628603 29133880 ~ 29135669 (-)
G54855 NA non-coding upstream 757483 29262760 ~ 29263429 (-)
LOC113542069 NA non-coding upstream 763819 29269096 ~ 29270020 (-)
G54269 NA other downstream 68689 28433220 ~ 28435411 (-)
zgc:163080 tmem14a other downstream 962769 27537769 ~ 27541331 (-)
dst dst other downstream 1308145 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 2593981 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 3768212 24661985 ~ 24735888 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 1374018 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 1606554 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 1647631 30152908 ~ 30161224 (-)
runx3 runx3 other upstream 1693048 30198325 ~ 30253456 (-)
rsrp1 rsrp1 other upstream 1835122 30340399 ~ 30344538 (-)

Expression


Co-expression Network