hcrtr2 (hcrtr2)


Basic Information

Item Value
gene id hcrtr2
gene name hcrtr2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26905497 ~ 26923251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939484.2
gcatacAGTGCAGTGGGATTATTCAGGAATGTTTGGGAAGGAATTTTTATGGAATGTCACACGGATCTCGTGCGCGTCTTGGCGCGCGTCCCTTTCACCCAATTGGTCACCGCGAGATCTCCTCGAGCGCGTCACGGCGGCGTTTAAAGCCCCTCGCGAGCGCGCTTTCGccctccattcattcattcattcattcattcagctgcCTGGCGATGGTGTAGGAGTGACAGGCGGCATGGCGGGGGTCACCGTCACTTCCAGCTGCCGCGACTGTTCCGCGTCCAATTCCACTGCAAGCTCCGCGCATCTGCGCCTCGACGAGGACGACGAACTTCTGAAATACATCTGGAGTGAATACTTGCATCCAAAGCAATACGAGTGGGTCTTGATAGTAGGATACATCATTGTTTTCCTGTGCTCGCTGGTCGGAAACACATTAGtttgttttgcaGTATGGAAAAACCATCATATGCGCACAGTGACCAACTACTTCATTGTGAACCTGTCCTTTGCTGATATCCTGGTCACCATTACTTGCCTTCCTGCCAGTCTTGTAGTGGACATCACAGAAACATGGTTCTTTGGAGATACACTCTGTCGGATCTTACCTTATTTACAGACaatctctgtgtctgtgtccgTGCTGACCCTCAGTTGCATTGCCCAGGACCGATGGTATGCTATCTGCCACCCTCTGAAGTTCAAGAGCACCGCCAAACGGGCCCGCAGGAGCATCATCCTGATCTGGTTGGTGTCCTGCGTGATCATGATTCCCCAGGCTATTGTCATGGAGTGTAACAGCCTCCTGCCTGAGCTGCTGCCTGAGCTCACCAACAAAACAGTTCTCTTTACTGTGTGTGACGAACACTGGGGAGATGAGATCTACCCCAAGGTCTACCACACCTGCTTCTTTATTGTTACCTATTTTGCCCCTTTGTGCCTGATGGTCCTGGCATACATCCAGATCTGTCAGAAACTCTGGTATCAGCAGATTCCAGGGACCTCATCAGTGGTGCAGAGAAAGTGGAAATCCCTGCAGTGTTCAGCTCAGACTGCAGGCCCTGGTGAGTCGGTCAAGGTCAGGACCAGTGCGGTGTCGGCTGAGATCAAGCAAATGAAATCTCGGCGGAAAACGGCGCGCATGCTGATGGTGGTGCTCTTCGTCTTTGCCATCTGTTATCTGCCTATTAGCATCCTTAATATCATGAAAAGAGTGTTTGGTGCTTTCAAGAATACAAACAACAGAGAAACAGTGTATGCCTGGTTCACCTTTTCCCACTGGCTTATATACGCTAACAGCGCGGCCAATCCCATCATCTACAATTTCCTCAGTGGTAAATTTCGAGAGGAGTTCAAAGCAGCCTTTACCTGCCACTGTACAGGTCGATGGGAAAAGAAGGAGAGGGTGAGGACCAAGATGAGCACTGACAGCCACAAATCCCTGTCCACACAAGTGAGTCATTTCGACAATGTCTCACGGATCTCGGACCAGGTCATGTAGCCCTGATCTGCGAGGGTTAATCTTCACAGCATGCCACTTCACAACTGATTTATAGGAAAACGCAAAGACAGGGAGATCTCAAAGGCTCAGACTTACACGATTGATATGCACTGAAGGCTTTGACGAAGGCATATTTGCTTCAGAGTATCACCCACATAAAGGGAAAATGACATTCTGCCTCAAATAAGAGCACAAGAACCACTGAAATTACATATCCTTTTTCTTCCAAAGATTGTTTATCTCCATGATTATGATGCCTTTCAGACAGAAAGCACAGGGCAATCTGGTGATGGAGTCATACTTTACACATGCCATTTTATTCACATCTCATGAAGACATTACCTTGCTAAAAAAGCAATAGtgtatatttgatattttacagtataacaTGCTTTATAGTGCCATGACTATATTGTTGATAATTTGCAAAAATATACCATAAAACAGTCAGAAATCTCACCagtgatttataataatttatatccTTGATAGTGTTTTTAAATTGccacaaataaattcataaaataacatcagaattccattttatttcagtgagATAAAAATTGCTCTCTGCAttgtgtgcatttgtttaatttgagATTGCACTGGGACTGTTTTTAAGTCTTTGCACAAGCTTGTATTATTCGTCACTCTGCCTCGTATGCTTGTCATGTGAAAGATATTTGCTCCAGATAATAACTATTTGCCAAGTTGCACATGTAGGGATCAGAGGGCAATCAGAGAAAAGCTAGTGGCAGATTCAAACATCTTTGTTCTGCTTTGGTAGGCCTCTTAAATATGAATGCTTTTAAAAGCAGGGCATAGAATTGCTTTTGTAATAGTGCTTTGTTGTTGGCCTTTCTTTCATGTGCTTGTTGAGTTCTTGCTGTTATCTTTAATGTAAATGCACTCCTGTTGAACAACaacagtagcaaaaaaaaaa

Function

symbol description
hcrtr2 Predicted to enable orexin receptor activity. Acts upstream of or within circadian behavior; melatonin metabolic process; and regulation of circadian sleep/wake cycle, sleep. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and spinal cord. Orthologous to human HCRTR2 (hypocretin receptor 2).

NR:

description
PREDICTED: orexin receptor type 2

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0030186 melatonin metabolic process biological_process
GO:0045187 regulation of circadian sleep/wake cycle, sleep biological_process
GO:0007631 feeding behavior biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016499 orexin receptor activity molecular_function

KEGG:

id description
K04239 HCRTR2; hypocretin (orexin) receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939484.2 True 2444 mRNA 0.45 7 26905497 26923251

Neighbor

gene id symbol gene type direction distance location
fam83b fam83b coding upstream 18418 26873228 ~ 26887079 (+)
mlip mlip coding upstream 40360 26830224 ~ 26865137 (+)
LOC117596838 NA coding upstream 95989 26803195 ~ 26809508 (+)
lrrc1 lrrc1 coding upstream 106985 26755660 ~ 26798512 (+)
eloal LOC108263752 coding upstream 169491 26727249 ~ 26736006 (+)
gfral gfral coding downstream 1983 26925234 ~ 26933750 (+)
bag2 bag2 coding downstream 284077 27207328 ~ 27213122 (+)
si:ch73-52p7.1 LOC108262847 coding downstream 321700 27244951 ~ 27257879 (+)
olig3 olig3 coding downstream 351265 27274516 ~ 27276329 (+)
tnfaip3 tnfaip3,LOC107597710,LOC107720364,LOC107681039,LOC107699163 coding downstream 391282 27314533 ~ 27327655 (+)
G53172 NA non-coding upstream 105979 26798698 ~ 26799518 (+)
G53092 NA non-coding upstream 352345 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 352775 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 353212 26552075 ~ 26552285 (+)
G53083 NA non-coding upstream 366977 26538234 ~ 26538520 (+)
G53280 NA non-coding downstream 10687 26933938 ~ 26934265 (+)
G53363 LOC108263596 non-coding downstream 94710 27017961 ~ 27018846 (+)
G53316 NA non-coding downstream 110598 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 132513 27055764 ~ 27056998 (+)
LOC117596898 NA non-coding downstream 135627 27058878 ~ 27068180 (+)
bcl2l11 bcl2l11 other upstream 1041151 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1058594 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1310561 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2503043 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2847599 24055154 ~ 24057898 (+)
G53328 NA other downstream 62727 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 274658 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1277784 28201035 ~ 28301823 (+)
G53692 NA other downstream 1524126 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1542837 28466088 ~ 28496606 (+)

Expression


Co-expression Network