prokr1b (prokr1,prokr1b,LOC108263766,LOC108425411,LOC107721082,LOC107699131,LOC107727892,LOC107680161)


Basic Information

Item Value
gene id prokr1b
gene name prokr1,prokr1b,LOC108263766,LOC108425411,LOC107721082,LOC107699131,LOC107727892,LOC107680161
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27412030 ~ 27421154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939502.2
tgaCTTCGTATTTCCTTCAGCACAAGAGGAGAAATGGGAAATTTTCCGGAATTCTTAGAAAAAGGGGTAATGTGTCTGatggttggtgtagaagaatgTGGAATCTGCCATGAAAACACCACCATCAGTCCTGACTGGTGCTGTGATTACTAATTGTGACCTAACATAACCTGACTAACCCAGGGAATGAAGATTTGAAGTGAAGACCaagaatttttaaacaaaaaaaaagccctcaCATCTTAATCATGGCAAACATTACGCATGTGGCAGTAATGTTTGTGGACCCCCACAGCCAAGTGCCCACAGATGAGCATGATCCCTACCTAGACCTTTATGATACGGACTATGGGATCCCAGCCGAGGAAATGCCGGACACCACTCAGGGCCTGGCTTATTTTGTGGCCACCATTGTTATTGGAGTTGTTCTTGTCTGCATCATGCTGGTGTGCGGCATTGGTAACTTCCTGTTTATAGCAACCCTGGCCCGCTACAAGAAACTGCGAAATCTCACCAATCTTCTGATCGCAAACCTGGCCATCTCTGATTTTCTTGTGGCTGTTGTGTGCTGCCCTTTCTTGGTGGATTACTATGTTGTAAAACAGCTGTCCTGGGACCACGGGAAAGTGCTCTGTGCCTGCGTTAACTACCTCCGAACTGTGTCTCTCTACGTGTCCACCAACGCCTTACTGGCCATTGCTGTGGACAGGTACATGGCAATCATTCACCCATTAAGGCCCAGGATGAAACATCAGACTGCCTACTGTCTGCTAACAGGTGTGTGGATTGTTCCGGTCATCATATCCATACCTTCTGCTTACTTTACTTCTGCGACCAAAGTGCCTTATGGTGCCAACCGCAGTAAAACCTTCTGCGCTCAGATCTGGACAGTGGACCAGCAACTTTACTACCGTTCCTACTACCTCTTCATTTTTGCCGTGGAGTTCCTGTGCCCGGTCCTGAGCATGGCCCTGTGCTACATGCGCATCTCCAGGGAGCTTTGGTTCAAAAGCGTCCCTGGTTTCCAGACGGATCAGATCCGGAAGCGTCTGCGTTGCCGGAGGAAGACAGTCATGGTGCTCATTGGGATCCTCACGGCATACATTCTCTGCTGGGCTCCTTATTATGGCTACACCATCCTGCGTGATTTTTACCCGACACTTATCTCCAGGGAGAAGAACTCACTGGTGGCATTTTACATTATTGAGTGCATTGCCATGAGCAACAGTATGATCAACACCTTCTGCTTTGTCAGTGTGAAGAATAACACAGCAATGTACTTCAAGAGGATTGTGCTGCTTCGCTGGAAGTCCACTTACACCTCTAGGAAGACAGATGTGAGGACACTGTCCACGCCTGTGTCTGAGGAAATTGATTGTATACAGCtgaggtaaaaaataaataaaattaaatttaaaaaaaataataaaatacctGTAGATTTGGAGCTGTCTTAAGCCACTGCAGATCCTAAGCAGAAGTGGGTCACCTATCTGTAAAGTTA

Function

symbol description
prokr1b Predicted to enable G protein-coupled receptor activity. Involved in neuron projection development. Acts upstream of or within response to light stimulus and sleep. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; olfactory region; and trunk. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 3 with or without anosmia. Orthologous to several human genes including PROKR1 (prokineticin receptor 1).
prokr1 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
prokineticin receptor 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08379 PROKR1; prokineticin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939502.2 True 1504 mRNA 0.46 3 27412030 27421154

Neighbor

gene id symbol gene type direction distance location
cnrip1b NA coding downstream 26519 27382304 ~ 27385511 (-)
ppp3r1a PPP3R1,ppp3r1,LOC108441257,LOC107727894,LOC106024317,LOC107699153 coding downstream 31399 27366318 ~ 27380631 (-)
wdr92 wdr92 coding downstream 51364 27355002 ~ 27360666 (-)
perp perp coding downstream 70913 27337048 ~ 27341117 (-)
ifngr1l NA coding downstream 165666 27229014 ~ 27246364 (-)
pcsk2 pcsk2,LOC107701967,LOC107699156 coding upstream 15991 27437145 ~ 27473721 (-)
LOC113542117 otor coding upstream 80508 27501662 ~ 27504308 (-)
polh polh coding upstream 97715 27518869 ~ 27525942 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 127111 27548265 ~ 27560020 (-)
mcph1 mcph1,LOC107568906 coding upstream 141103 27562257 ~ 27598047 (-)
G53862 NA non-coding downstream 43970 27367361 ~ 27368060 (-)
G53851 tnfaip3,LOC107597710 non-coding downstream 92408 27318088 ~ 27319622 (-)
LOC117596885 NA non-coding downstream 97679 27305874 ~ 27314351 (-)
G53732 NA non-coding downstream 158078 27226345 ~ 27253952 (-)
LOC117596899 NA non-coding downstream 210132 27197359 ~ 27201898 (-)
G53729 NA non-coding upstream 109422 27530576 ~ 27803450 (-)
LOC113542054 NA non-coding upstream 557290 27978444 ~ 28028256 (-)
G54201 NA non-coding upstream 679219 28100373 ~ 28100589 (-)
G54204 NA non-coding upstream 685561 28106715 ~ 28175966 (-)
G54219 NA non-coding upstream 725184 28146338 ~ 28146866 (-)
dst dst other downstream 216075 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 1501911 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 2676142 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2760183 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 3279547 24108351 ~ 24132483 (-)
zgc:163080 tmem14a other upstream 116615 27537769 ~ 27541331 (-)
G54269 NA other upstream 1012066 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 2458141 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 2690677 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 2731754 30152908 ~ 30161224 (-)

Expression


Co-expression Network