LOC113542150 (LOC108263070)


Basic Information

Item Value
gene id LOC113542150
gene name LOC108263070
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6584785 ~ 6602144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939506.2
GGATTCAGACACTGttacagacacagacaggacATTTGTACGTCCTGTGAGATTCAGCATGCTTTACTGGGGCAAACTGAACTCGACAGAAGATGACTCTTCACATCAGAACATTAATGGATTTGATGAAATGATCCGCGGGACGAGAATCACAGATGTGTCTATCAGAGAGGGGCTCGCGACGTTCCTCAGGGACACGGACCGGAAAGTCACCCTAGTGACGTCACACAAGCGAATGACTTTAGATTTGAAGAAGGAGCGAATTGCATTATTGAGCAGTGGAAAGGAGCATGTTGTGCTTGTGTCTGAGACGGGGACGGTGCGTGAATGGAAACGTTCAGCTCAATGCAACATACCCAGGATATTCAGCAGCTTAACTAACAGGCACATTGCACAAGTTGCATGTGGAAACTATCACTCGATTGTCCGAACAAAAGATGGTCAGTTGTTCACGTGGGGTCAGAACTCGAGCGGTCAGCTGGGTTTGGGGAAAGGTAAGCCAAGCCAAGCCGAGTCTCCTCAGCTCCTTAAGTCTCTGTCTGGGATCCCGCTGGCTCAGATCAGCGCTGGAGGAGACCACAGCTTCGCCCTGTCTCTCTCCGGAGCCGTGTTCGGCTGGGGCAGGAACAGCGCTGGGCAGCTGGGCCTGGGAGACACTGAAGATAGACACATCCCTGTTTGTGTGAAGAGCTTGAATTTGAAGAAAACTGTGTTCATCTCATGTGGAGAGGAGCATACTGCTGTTCTCACAAAGAGTGGActgatgttggtgtttggatcTGGTCGATATGGGCAGCTTGGACATAACTCATTCAGAGATGAACATCAGCCTCATGTAGTTGCTGAATTCTGGGGGTCCAAAGTGTCCCAAATAGTCTGTGGACGGCATCATACTCTGGCACTGGTTGAATCATCAAACACAATCTACTCATTTGGATGTGGAGAGCAAGGACAGCTGGGAAATGGACAGAGGACCAATCAGTGTGTGCCACTTCCTGTCCAGCTGCCACCAGAATATAGTCCTGATCAGATGATTAAGAAAATTACTGCTGGAGGGAATCTTTCTGTCctctttttctctaaaatggatGGTGTTCAAGCAAGTTCAAATCTGAGTTCATGCAATGGCACAGCAGTGTTGGATGATGAAATTATTGACCGCTGGATTTCAGACTGTAACTCAAAAGTATGGAATAAAATCCAAAGGGAAATCAAGAGAATGTTCTCATCAGCATCATGCATCAATGGTAGTTTCATTGAGAAAAGCAATGacaaacattataaaacatCAGTAGGGACTTCTGGTCTGGATTTATCATTGACTCGTCTTGCTTTTGAGAAGCTGGCCAAAAAGGACAAAGTTCTATCAGTGGTAGAGAAGGTGGTAGAGAATGATCTTCTGCCCTCTCTGGGCTCGACTGCTGCTGGTGTGGAGGCTCTGAGGGTTTACCTTATCCTGCCTGAACTCCTCCGAGTGCTGAACAAACAAGGACGAGGCACACAGCTCACTATCTCTCTGGCGTCTACCATCTTAAAACTCGAGCCTGAGTCACTGGATGTCTTGACCAGCCTGTGGACCAAACTgccctactactactacaggaCTCTGGTGAAGATGTTTCACTCAGTGTGTGCTCACTTCATGTCACTGATGACGACTACAATATGTGACCACTGGACTGAAATAAAGCCTGTGCTAATGGTTCTGCAGAAGCTTTACAATATTAATAGTCAGAGAGTCGTACAGTTGACCGAGGGTTACTTCCTTATGAAGGAGCTCAGATGTTTTTTCAACTTGgtGGAAAAATATCCTATGGGGAATCTGATCCTTAGGATGATGCAGCTTGGAAACCCTTGGGAGTTCTTCCATGATGATGGGCAAATTGATATTTTAATCAACTTTTTGaaaagtACAGAACAGCTTACATGTTATCCATTTATCCTTGACATGAAGAGTAAATGCACAGTGTTCCATtTTTTACAGGCACAACACGGGGAGCCTTTGCCGTTTTTTGTCTTTGGAAACAGTCTGTGTGTGAACAGAGAAACAGTGCTGGCTGACACACTTGTGTACCTGAGAACAAGCGGACATAATTATGCTCTCCctttaaagGTGAAATTTTCTCTAGAGGATGGGATCGATGATGGAGGTCTGCTTGCTGAATACTTCACCTTGCTTGGACAGGAAATAACAAAAGACTCCAGTGTAATCCAAGAATCTGAGGACTCAGGACTCTTCTGGTTCTCTGCTGATGATTCTGGCTCCAGTCTGGAGGAGCTGTTCTACATTGGTGTCATCTGTGGTTTGGCCTTTTATAATCACAGTTTTATGCACATCGGCTTCCCGGTGGCACTGTTCAAGAAGCTGCTGAACCTCAGTCCAACATTGAGAGACCTGGAGGAGCTGTCACCAGTGGAGGCCAGAAGTCTAAAAAATGTACTGATGGAAGACGAGGATGTTGTGGAGGAGCTCTACTTGGATTTCACAgtGAAAGGAAAAGAGCTCATTCCAAATGGAGTGGAAATCCCAGTCACAAAAGCTAACAGGCAGAAATACGTGGACTTGTACATCGACTTTGTTTTTAACAAGTCTGTGGAGACTCAGTTTAGGACGTTTGAGGAAGGTTTTTCTCATGGAAACCCCTTTAATTTCTGGAGGATGTTCAAGCCTGAAGAGCTCAGAGACTTACTCTACGGCACGTCTAAATACGAGTGGGAGGAGCTCCGACAGgGAGTCACATGTGAATGCTGTGGACCCTCAGATGAACTCATCCAGAACTTCTGGTCTGTTTTCTTTGAGCTGAATGAAGAACAGCAGAAGAAGTTTCTGACTTTCGTCTATGGGACAGATCGCTTGCCTGTAGGAGGACTCTCTAAACTGCAGCTAAAAATTGTGAGACACAACTATGCTGATGCAGACGACCGTTTCCCCTCGGTCCAGACCTGTTACGGCATTTTACACCTTCCAAACTACAGCGACATCCACATACTCCGAGACAAACTCATTCATGCCATCACTTATTGTGAAGTTTTTGGACAAAGGTAAAAGTTGAGTTTGTTGGGTCAGGCATTAAAATGTCAGCTTATAtcttaatatattataattagaaCAGTCTATAAGTTTGGGTGGTTGCTTGTCAGCCTACAGTGATTACTGTGTGTTACACTACAGCTGTGTTTACTTACTTCATGGTTCAGATTTGCTTACATCCTGCTTCTTGTAGTTAGTCtcactgtgttgtgtgtattgtgatgTATATGGGTTTGTACTGCAATTTTAAGCCTGGTTTCcgttttcatttctttttttgcttagtTTCTATTTCTGGTCCTGGTTTTGTAGTTCTTCAAGTAGTGTAtatagtttttcttttattttctgttctattttttttttcttttttttgtcatttttatagatTTGCCTTTAATGATTCATGTTCTGGATCCATGAATCTCAGGAGAAGCTTAAATAAAGGGCTGACTACATCCAA

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase HERC3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939506.2 True 3494 mRNA 0.44 25 6584785 6602144

Neighbor

gene id symbol gene type direction distance location
herc3 herc3,LOC107684306,LOC107583224 coding downstream 1650 6549846 ~ 6583135 (-)
elmod2 elmod2,LOC107594343 coding downstream 192263 6384600 ~ 6392522 (-)
znf330 znf330 coding downstream 317074 6253523 ~ 6267711 (-)
il15 NA coding downstream 341646 6229644 ~ 6243139 (-)
usp38 usp38 coding downstream 744015 5825410 ~ 5840770 (-)
herc5.1 NA coding upstream 2430 6604574 ~ 6620882 (-)
LOC113541261 LOC108263069 coding upstream 21325 6623469 ~ 6641622 (-)
LOC117596878 LOC108263069 coding upstream 41789 6643933 ~ 6659991 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding upstream 98180 6700324 ~ 6716263 (-)
aimp1a aimp1 coding upstream 222765 6824909 ~ 6844491 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding downstream 46235 6535704 ~ 6538550 (-)
G41563 NA non-coding downstream 212919 6371655 ~ 6371866 (-)
G41491 NA non-coding downstream 282697 6295232 ~ 6302088 (-)
G41300 NA non-coding downstream 708394 5876101 ~ 5876391 (-)
G41174 NA non-coding downstream 983642 5599984 ~ 5601143 (-)
G41768 NA non-coding upstream 74986 6677130 ~ 6680273 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding upstream 192435 6794579 ~ 6797620 (-)
G41938 NA non-coding upstream 339096 6941240 ~ 6941458 (-)
G41944 NA non-coding upstream 409949 7012093 ~ 7012306 (-)
G42008 NA non-coding upstream 414621 7016765 ~ 7017405 (-)
gab1 gab1 other downstream 765272 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1356818 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 1678546 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 1975335 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3550232 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 559330 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 836760 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1532497 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1867842 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1868214 8470358 ~ 8470429 (-)

Expression


Co-expression Network