polh (polh)


Basic Information

Item Value
gene id polh
gene name polh
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 27518869 ~ 27525942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939512.2
TGATATAATACACAGTTTAGTTCAAAGAAGAAGTGAAAGTAGGGCGGAAGCTTGTAGCTAAGGCGCGAAGTTTATGTTGCtcgttatttagttatttttgaTGGGGTTTTGTAGATTTTACGGCGCATCCTGTAGCTGACGGTGCTGCGTGATGGAGGTGGGAAAGGAGAGAGTGGTGGCGCTAGTGGATATGGACTGCTTTTACGTGCAGGTGGAGCAGAGATTTAACCCCGAGCTGAGGAACAAACCCTGCGTCGTGGCTCAGTACAAAACCTGGAAAGGAGGAGGTATCATAGCAGTCAGTTATGAGGCCCGAGCCCACGGTGTGACAAGAAACATGTGGGCGGATGATGCCAAGAAACTGTGTCCAGGTCTTCAGGTGGCGAGAGTCCGAGAGTCACACGGGAAAGCTGATCTAACCTGTTACAGAGAGGCCAGTGTGGAAGTGATTGAGGTCATGTCCCGATTTGCAGTCATTGAGAGAGCCAGTATCGACGAAGCCTACATGGACCTCACCAGCAGTGTCCAGAAAAGACTGAAGGATCTAGAAGTATCACAGATTGACCCTCAACTTCTGAAGAACACTTACGTCCAAGGCTTTCCCATTCCTGACTCGGTGGAAGATGTGCCGGTAGATAAAGAGGAGCAGAGGTCAAAGGGTCTGCAGCAGTGGCTCGACAAACTGCCTGCCTGCTCTCAACCAGGCTGTTTGGGCTACTCAGAGGTGTGTTTGGCTGTTGGAGCGATAATTGTGGAGGAAATGAGGGCCGCCGTGGAGCAGCACACCGGATTCCGCTGCTCTGCAGGAATTTCTCATAacaagGTATTGGCCAAGCTGGCATGCGGTCTCAACAAACCAAATCGGCAGACCGTGCTTCCTCTTGCATCGGTGTCTGAATTCTTCATGACGTTGCCCATCAGTAAAATTCGCAATCTGGGAGGCAAACTGGGTGTCTCCGTCACAGAGAGTCTAGGGGTGGAGAATATGGGTGAGCTCACTCAGTTCACACAGGCACAGCTGGAGGAACACTTTGGAGAGAAGACTGGGCCATGGCTGTACAACTTGTGCAGAGGCATTGAGTTCGAGCCAGTGAAACCCCGACAGCTCCCCAAATCCATCGGCTGTAGCAAGAACTTTCTGGGAAAGTCAGCTCTGGCTACAAAAACTCAGGTTCAGCACTGGCTACACCAGCTGGCCCTTGAGCTGGAGGAGAGACTGAATAAGGATAAAGAGATGAATGAACGAGTTGCTAAGCTGCTGACAGTGGGGGTCCGCCAGGCTGGAGATAAAAAGCCCAACAGTTTCTCTCGCTGCTTTGCTCTAGCGCGCTATGAGGCCTCAAAGATTTCCACCGACAGCTTTGCCATCATTAAAAGCCTGAACACTGCTGGCAGCCATCAGGAAGCCTGGTCTCCTCCGCTCACCTGTCTCCATTTATCTGCCAGTAAGTTCATTGAGAATTCGTCAGGAGAAATCACTAGTTTCCTCAGCAGTGATGTAGCACCAACACAGTCACGTCTAAAAACAAATGAGCCAGCTTCGAAAACAGAAACAACCCCCAAGAAACCTGGTAGTATCCAGGCCCTTTTCCAAAAAgctgctgaaaagaaaaagaaggaagcaGATGAAAGTTGCACAGAAAAGGAAGTCGTCACCTTGTCTTCCTCTGAGAACCTTCCCCACAGTACAGCCAGTATGGTTCCTCACAAAGCGCCAGTGGTTCCAAATACgtcactttcttctttttttcaaagaaaGACATTGGAGAAAACCTCCGACGGGTTCCctaaagagaaacagatgaaagaaagcactgAGGACAAATCTCAGACTGAATGGTCTCTACAGGGTTCTTCATGCACTTCATCTAGTGTTGAGCAGAATCGTGCAGAGATCCTCACTCAAAATGTCAACTTTAAAGATAGCAAAGAGGACTTTCACAGATGCGAACGCTGTGGACAGGAAGTGTTAATGTGGGAGATGCCGGAACACACTGACTACCACTATGCCCTCGATCTGCAGAACTCCCTGTCCTCCTCCTCATCGTCGTCGTCATCATTTTCTGCCCCAGTCATGGCTGAAACAGCGTTGTCATCACACGGAAAGAGCAGACCCAAAACTCAGACTGGACCTCAGGCAAAGAGAGCAAGACCCAGGGACAACTCCACCACTCTGGATTCTTTCTTCAAgaaagcttaattttttttaaacacagatctTCAAATTAATCAGATATTTcttaaatcatgtttttgtaGGAATTTGTCTGGCTTACAAATATGAACATGctataaacatacaaaaaaaaattcctcaggTAGAAAACTGTTGAGGTTCTAAGCTTGAGAAACTTAAGTCACTTAAGAATTTATGTCACTTCctaatgattttaataaatattatcattttaa

Function

symbol description
polh Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in error-prone translesion synthesis and response to radiation. Predicted to act upstream of or within DNA biosynthetic process and DNA repair. Predicted to be active in nucleus; replication fork; and site of double-strand break. Human ortholog(s) of this gene implicated in xeroderma pigmentosum variant type. Orthologous to human POLH (DNA polymerase eta).

NR:

description
DNA polymerase eta

GO: NA

KEGG:

id description
K03509 POLH; DNA polymerase eta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939512.2 True 2412 mRNA 0.47 11 27518869 27525942

Neighbor

gene id symbol gene type direction distance location
LOC113542117 otor coding downstream 14561 27501662 ~ 27504308 (-)
pcsk2 pcsk2,LOC107701967,LOC107699156 coding downstream 45148 27437145 ~ 27473721 (-)
prokr1b prokr1,prokr1b,LOC108263766,LOC108425411,LOC107721082,LOC107699131,LOC107727892,LOC107680161 coding downstream 97715 27412030 ~ 27421154 (-)
cnrip1b NA coding downstream 133358 27382304 ~ 27385511 (-)
ppp3r1a PPP3R1,ppp3r1,LOC108441257,LOC107727894,LOC106024317,LOC107699153 coding downstream 138238 27366318 ~ 27380631 (-)
agpat5 agpat5,LOC107665182,LOC107717842 coding upstream 22323 27548265 ~ 27560020 (-)
mcph1 mcph1,LOC107568906 coding upstream 36315 27562257 ~ 27598047 (-)
myom2b myom2 coding upstream 541831 28067773 ~ 28099456 (-)
oit3 oit3,LOC107564524,LOC107754765,LOC107660216,LOC107717846 coding upstream 788771 28314713 ~ 28330532 (-)
mcu mcu,LOC107660217,LOC107564525,LOC107702682,LOC107754763 coding upstream 807683 28333625 ~ 28388691 (-)
G53862 NA non-coding downstream 150809 27367361 ~ 27368060 (-)
G53851 tnfaip3,LOC107597710 non-coding downstream 199247 27318088 ~ 27319622 (-)
LOC117596885 NA non-coding downstream 204518 27305874 ~ 27314351 (-)
G53732 NA non-coding downstream 264917 27226345 ~ 27253952 (-)
LOC117596899 NA non-coding downstream 316971 27197359 ~ 27201898 (-)
G53729 NA non-coding upstream 4634 27530576 ~ 27803450 (-)
LOC113542054 NA non-coding upstream 452502 27978444 ~ 28028256 (-)
G54201 NA non-coding upstream 574431 28100373 ~ 28100589 (-)
G54204 NA non-coding upstream 580773 28106715 ~ 28175966 (-)
G54219 NA non-coding upstream 620396 28146338 ~ 28146866 (-)
dst dst other downstream 322914 27057897 ~ 27195955 (-)
LOC113542183 NA other downstream 1608750 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 2782981 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2867022 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 3386386 24108351 ~ 24132483 (-)
zgc:163080 tmem14a other upstream 11827 27537769 ~ 27541331 (-)
G54269 NA other upstream 907278 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 2353353 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 2585889 30111831 ~ 30122822 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other upstream 2626966 30152908 ~ 30161224 (-)

Expression


Co-expression Network