herc5.1


Basic Information

Item Value
gene id herc5.1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6604574 ~ 6620882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939514.2
TCTCGGTGAGCTATAAACAAAGACAGGGCAGTATATAAGCAATGACTCTCCTAAAGCGAATCAAGCCACACAAGCAGACTCTACATCTTCACCATGTTGTGTTACTGGGGAGAAGCTGTAAAACCGGACGGGTTTGGCTTAGTGAAGGCTGACAGCGTGAAATTCACGGACACTGGCATTGGATACTTTTCTCCCAAATCCAGGATCAGGGATGTGTCTCCTGGGAAGAGTCTGGTGGGATTTATCCGGGGGGATGGAAATGCATCTGTCATGAGACTGAACACCAGAGAACCTGTCAAGTCTGGAAAACTAAAAACATTAGACCAGATGAAAGACAAAATCAGACTGATCAGCTGTGGTGATGTTGATGCTGTCCTTCTGGCATATGGAGACAGAATACTTTCTGTGGAGAAATCTAATGTTTGCAGGCCCATCAAGGAGCTCAGCAGTAAAACTGTAATTCAGGTTGCATGTGGAGACCAGCACTTCATGGCACTGACAAATGATGGTCAGTTGTTCACGTGGGGTCGGAACTCGAGCGGTCAGCTGGGTTTGGGGAAAGGTGAGCTGAGCTCTCTGTCTCCTCAGCCTCTCAAGTCTCTGTGTGGGATCCCACTGGCTCAGATCAGCGCTGGAGGAGACCACAGCTTcgccctgtctctctctggagCCGTGTTCGGCTGGGGCAGGAACAGCGCCGGGCAGCTGGGCCTGGGACATACGGAGGACGTGTACAGTCCAACCTGTGTGAATAACCTGAGCCAAAAGAAAACGATTTCCATCTCATGTGGAGAGGAACACACTGCTACTTTGTCAAAGgGAGGAGCAGTTTTCACATTCGGATCAGGTCGTTACGGGCAGCTTGGTCATAACACATTTAAAGATGAGCTTCAGCCTCGTGTGGTTACTGGGCTCTGGGGTATAAACGTGTCCCAGATCACATGTGGGAGGAATCACACTCTGGCGCTGGTTGAATCGTCAAACACAGTCTACTCATTTGGATGTGGAGAACAAGGACAACTGGGAAATGGGCAGAGGACCAATCAGTGTGTGCCACTTCCTGTACAGCTGCCACCAGCGGCAAATAACAGCCATACAGTCGAGAGCATCATTGCTGGCGGGAATCAATCCTTTGTCTTGTGCTCTTCCCAGAAATCTGATGTGCCTGACCAAAGGAAGGGGATTGTGACATTAGGAGACAAAATGATTCACAGATGGGTGTCCGAGTGTGAATCAAAACAGTGGAGGACAATCAAAAAGGAAATAAAAAGAGTTTTCTCATCTCCAGCTTGTATAAATGGAAGCTTCATTATAAAAAGttgtGATGGACATTACCAAACATCCACGCACGTCTCTGGTTTGGATTTGGACTCAGTGAAAACTGCTTTTGAGCGGTTGGCCGAGAAGGAGAGGGTGCTGTTGGAGGTAGAGAAGGTGGTAGAGAAAGATCTTCTCCCCTCTCTGGGCTTCACTGTTGCTGGTGTGGAGGCTCTGAGGGTTTTCCTCATCCTGCCTGAACTCCTCCGGGTGCTGAAGAAACAAGGACATGAGACAAAGCTCACATCATATGCTTCTGCCATTTTAAATCTGGATTCCTGTACGCGTACAGTTTTAGAGAACCTCTGGTCTGAACTCCCCGAAACCTTCCTCAAAACATTAGTGGAACTTTTTCACACTTCAGTTGCAGCAATGATATCTAAAGTGACATATGACTATAGACAAAAAATCGCCATGGATACACCATTACGTAAATCAGTGCAAGTCCTCCAGATGCTCTACAAGGCTACCTGTAGGAACCAAAGAGAAATCACACCTGGAGATTTCATCATCTATGAGATCAATGAGCTGTTTGACATGTTATATGCTATTCAGAAGGACATCGATGAGTTTTATGGGGGTTTTGTTTGGTATGGAGACCTTAATGTGACGGTGGCAGAAAAACAGCACCATATGAACACCTTAAAGCTTCTGAGCTCATGCCCTTGCATCTTTACTCTGGAGGCTAAATATGGCCTTCTAAAGTTCAGAGAACCTCGGGGACCCTTTAGAATGGAGTTAAGACGCACTGCACTTCTGGAGGACTGTTTCCGACAGCTGAGGGCCGCGAGCGAGCAAGCGCTGAAGGGCTGGCTGCAGGTGGTGTACTGTGAGAACTTCGAAAAGAGCGACGTCTATAAGAGGGACTTCTTTCACAATGCATTTAAGATGCTGTTGGATGCAGAATCGGAAATGTTCATGTACAATGACACAAAAACATTGATCTGGTTTCCTGTTGAgCTCAGTTTACCAGAGGAGAGATACTTTGTTCTCGGAGTCCTGTGTGGGCTGGCCTTTTACAACAACAGTGTTGTGCACATGCCCTTTCCTTTAGCCCTGTTTAAAAAACTTCTCGACATCAGACCTTCTCTGGAGGATTTTGCTGAGCTGAGTCCTATCGTAGCACAGAGTTTGCAGTACTTACTGAACTACAGTGATGACGATGCTGATAACATGTGCATGATCTACACTATTGTGTGGAACAACAGAGAGGTTGAACTGGATCCAGTTGAGCCTGGCAAAGCTGTGACAAGCTCAAACAAAAAGGTGTTTGTGGACGCGTATGTGGATTACGTGCTGAACAAGTCAGTGGAGAAGGCGTTTAATGAGTTTAAGAGGGGCTTCTACAAAGTGTGTGACAGAAACGTGGTGAACGTCTTCCAGCCGGAGGAGCTCAGAGGAGTGATGTTGGGCTCAGAGGAATACGACTGGGACGTACTCAAAATGAATGCGACTTATGAATACATATTTCATGCAAGACACCCAACGATTGTCTCATTCTGGGAAGTGTTTGAAGAACTGTCAAGCCAGGACAAGAAAGCCTTTCTCTTGTTCCTGACTGGGTTTGATCGAGTTCCCGTTCTGGGTATGGGGCAGGTGAAGATGACAGTGCGACAGCTGTTGAACTCCACACAGGATCATCTGCCCCAGGCCCTTACCTGCCATACCATACTGGATCTCCCTGTAtaccaaacaaaagaaatacttCGAACCAAGCTCATTGAAGCTATACACCACAGGAGAGGATTCTGGGAAGAATAAAATGATTGTGTCTCCACAAATTCCAAAGTTATATCATTTGTTACTGtgcttttataagaaaatgCAAACTCTGTTACCAGCGCTGTGTGTCTTAATACATACACCACAGGAGAGGATTCTGGGAAGATTAAAACGATGGTTTCTTCAAATTTCTGTCTTATAAAATTTGTCATTGTCTCA

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase HERC4

GO: NA

KEGG:

id description
K22372 HERC5_6; E3 ISG15--protein ligase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939514.2 True 3258 mRNA 0.46 24 6604574 6620882

Neighbor

gene id symbol gene type direction distance location
LOC113542150 LOC108263070 coding downstream 2430 6584785 ~ 6602144 (-)
herc3 herc3,LOC107684306,LOC107583224 coding downstream 21439 6549846 ~ 6583135 (-)
elmod2 elmod2,LOC107594343 coding downstream 212052 6384600 ~ 6392522 (-)
znf330 znf330 coding downstream 336863 6253523 ~ 6267711 (-)
il15 NA coding downstream 361435 6229644 ~ 6243139 (-)
LOC113541261 LOC108263069 coding upstream 2587 6623469 ~ 6641622 (-)
LOC117596878 LOC108263069 coding upstream 23051 6643933 ~ 6659991 (-)
pkd2 pkd2,LOC107583176,LOC107684281,LOC107706826,LOC107675808 coding upstream 79442 6700324 ~ 6716263 (-)
aimp1a aimp1 coding upstream 204027 6824909 ~ 6844491 (-)
npnta npnt coding upstream 321815 6942697 ~ 7006034 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding downstream 66024 6535704 ~ 6538550 (-)
G41563 NA non-coding downstream 232708 6371655 ~ 6371866 (-)
G41491 NA non-coding downstream 302486 6295232 ~ 6302088 (-)
G41300 NA non-coding downstream 728183 5876101 ~ 5876391 (-)
G41174 NA non-coding downstream 1003431 5599984 ~ 5601143 (-)
G41768 NA non-coding upstream 56248 6677130 ~ 6680273 (-)
G41809 dkk2,LOC107594451,LOC107684280 non-coding upstream 173697 6794579 ~ 6797620 (-)
G41938 NA non-coding upstream 320358 6941240 ~ 6941458 (-)
G41944 NA non-coding upstream 391211 7012093 ~ 7012306 (-)
G42008 NA non-coding upstream 395883 7016765 ~ 7017405 (-)
gab1 gab1 other downstream 785061 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 1376607 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 1698335 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 1995124 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 3570021 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 540592 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 818022 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 1513759 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 1849104 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 1849476 8470358 ~ 8470429 (-)

Expression


Co-expression Network