gfra1a (gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611)


Basic Information

Item Value
gene id gfra1a
gene name gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30920905 ~ 31006462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939518.2
CCCTGCCGCGTGCTGCCACTCCGGAGTTTTTTTGGAGACCTCGGAAAGCGATCCGCGTGTCTTTTTATAAACCTCCCCCATGCACGAGCAGCGCGAGACCACCCCGTCCCGGAGCGTCCCGATCCCGGAGCGCTTTTAAGGAACCTTTTGACCATCACTTTGTGCTTGCGGGAATCCCGGTGCGGGAAGAGGAGTGCGcgtgaggagtgaggagagaTGCTCAGATGGATGTAAAGAGCAGCGTGTGGGTCTGTAATCAGTGAGCtgctttttacacacacacacgcacacacacacacacacacacacacgcacaaacacgcacacgcacgcacggaGGACCGCGCGCTGGAAACGCGGATCGGACCCGCGATGATCGTCTCCACGGTTTGCGTTCTCTTTCCGCTGCTGGACGTCCTGCTGTCTGCAGAAAAGTCCGTGTTTGCTGCAGCGAGCCGGATGGACTGCGTTGGAGCCAGTGAGCTGTGCTTAAAGGAGCCGGGATGCAGCACCAAGTATCGGACTATGAGGCAGTGCATAGCGGGGAAGGAGGGCAACATCAGTGCCGAGGGGAGGGACGAGTGCCGCAGCGCCCTGGACGCGCTCAAGCAGAGCCCGCTGTACAACTGCAGGTGCAAAAGAGGcatgaagaaggagaagaactGCCTGCGCATCTACTGGGGACTCTACCAACATTTACAAGGAAATGATCTACTGGAGGAATCTCCTTACGAGCCCATGACTAGCCGTGCATCAGATATATTTCGATTGGCACCCATCTATTCAGAGGGAGACACGAACAGCGGCCCCAGGAGCGCTCCAGCCACCATGACCCCGGCCCATAACCCTGGTAGAAACAAGAGATCAAACCCCGCTTGGGCTGTCCTGGGTGACCCTGCTCTAGCCAAGGAGAACAACTGCCTCAATGCAGCCAAGGCGTGCAACCTGAATGACACGTGCAAGAAGTACCGCTCGGCCTACATCAGCCCGTGCACGAGCCGCGTCTCCACGGCCGAAGTGTGCAACAAGCGCAAGTGCCACAAGGCGCTGCGTCAGTTTTTCGACAAGGTTCCTCCCAGACACAGCTATGGCATGCTGTACTGCTCATGCCCTCCAGGGGACCAGTCAGCCTGCTCCGAGCGTCGGCGCCAGACCATCGTCCCCGCATGCTCCTATGAGGACAAGGAGAAGCCCAACTGCTTGGCACTGCAAGCCTCCTGCAAGACCAACTACATCTGCAGGTCACGTCTAGCGGATTTCTTCTCCAACTGTCAGCCTGAGCCACGTTCTCTTTCTGGCTGTCAGAAAGAGAACTATGCTGATTGCCTACTCTCCTACTCGGGCCTCATTGGGACGGTGATGACTCCAAACTATCTGCGATCCCCTAAAATCAGTGTGTCGCCGTTCTGTGACTGCAGCAACAGCGGCAACAGTAAAGAAGACTGTGAGCAGTTCACGGAGTTCTTTACTGACAACGCCTGTCTGCGTAATGCCATTCAGGCGTTTGGAAACGGGACAGATGCGAGCGTGTGGCAGTCGGCTCCAGTGCAGAGCACCACGGCCGTGATCACTCCATCACACAGAGGTCGAGGACGTGAGAAATCACCCAACTCCCTGGAGCCGGACCTGCACGGCAACCGCCTGAACCCTGGAGACAACTCACTGTATCAGTTCTGTGGAAACCTGCAGgcaCAGAAACTGAAGACCAATCAAACAATAGATGTGTTATGTGTGGACCCTCAGATCAACCCCAGCTCCTCCAACTCCATCTCGGGGAACTCAGCATCTCCGTCAGGCTTTAGCActctgctgctcctgctgctcagCTCTTTGCACTGCTCCCTGGCACTCCTGCTACCCAACCTGGCACTGCTGTTGTAGCCACCTGGCCAATGCAACACATGGACGCTcgtaatttgtattaaaaaaaaaaaatctctgataTATGTTCCAGGTCTACCTGTTGTAATCAccttctctcactgtctcctctCAGTGTTTTTACAGCTCTGAGTTTTATGAGCTTTGGTTTATGCGAAAGGGATTTCAGTGTAACTTGATTTTTCTCTCCGTTCCCTGTTGGGATTTTTCTGTACCTGGAGATGAACAGTGAAAAAGGATGTGCAAGATTTGTTCTTGCAACTTTCGAGACGAACCACAGGCTGGTCTCGGGGGTGAGAGATCATTTGAAATGGTGGTCAAGATGAGTGGGGGCAGCTTTCTTAAGTGTTTGACAAATctcatctgtgtttttttgcgTATGTTGTGTGCGGTACGATATGCATTGACTTCTAACTGGCACACAAAACAGAGGCTTACTGGGAGGTTTTGTCAGTTTCGAGCCTTTTTCCCCACTCttagcataaacacacataGTGTCAGAGACTTGGAGTAACTTTTGGAGGCACACACAAAGTCCAAGGAAGAGTTGATTGCTGGGATTCCTGTTGTGCATGATTATTCTTATAAAATGATTGatttaatctgattattttgGGGGAACATAGCTATTCATATGTGTTCAGTATATATTTTGAGATCGTACTTTGGGTCAGGAAGAATTTTTTTGGGGAGTGTTTGAGCACAGAGAGTCTgaaagagtgtgttacagtgcctGGGTCAGTTTGGCAGTACCAGTTAAACTGCACTGAGCAGAGTGCCTCCAAGTCTATTAACAGTCACCAGTGTTGTATATGATTTCCTCAAACTCTTACATTCTCTCTCCTATGAAACTCCACTGTAATTGTAGCTGTCACCAGTCCAAACTCATCTGTCCTCAAAGTGCACATACATAATGCCTTTACAGTGTAGACCATGCTTGGACCCTTTGCGTCCAAATGAAATACCGTATGTATATTatagtgttctttttttgtgttgtaaTTCCAAGCATTACAGAAGGAGGCTGTGTTATGGCTGTATGCTCAAACCAGATCTTGATCTTAATCAATCCGAAGGTTCGACTTTAAAAGTTTCCTTTGAAACGAACCAGAAAAGCGATACACGCTCACAAAAGCATGTGCAGCTTTAACAGCCGTTGCACATTCGAAGCATTTATGACATGATGTTTGGCTTTTTTAACGGAAATAACACAAGAAATGCATTAATGCATTGCTCTCTTTATTTACAGGGCATCCAGATCTTATTAAGAGacttatttacttaaaataGACTGAGAAAATATGAATTTTGATTTGATAATGCAACGTCTTATCCTACTGCATAAGGTCATAATGACTTGTTTAGataaacatatactgtatacaccaTATAAAGGAATAGACTCCACCTATAATGACTGCTGCCCCAAAGTGTACTACAGAGATTTAATTGAATACTAAACTAttgtttaatggtttaaaaaaaggaagggaaaagtaaagaaggggaaaaaaactcttATTTTTGTATCTTTTGCATTGTGAGTTTTCTTTATCACAAAACTCTTGCCCGTGCTAGCAACAAAGTTATACGAGTTATAACTGTTGCAGTAAAGCTTTTACAGATGGCATTAGCAGGTCTAGATGGGCATTTTAGGGGCAGATGCATTGCCCTGCTGTGCATTAAAGGCTACACTGAGTGTACAAAACACAATACTTCTGGACATTACAGGGCATTTTCTGACTATTTGACTCTCATTATGGCCATCTGCTAATCTGCACAATTCATTTCTCTTTCAACAGTTGGCCCTTTTCATCTTTGGTGTGCTGGATCATTCGGGATACACAGTGATGTGCTTAAAAAGGTCCCAGCATTAATCGCATTTTTATCTTTTGCCTCAATCCATTGGCATTTCTCTATATTTTTTGTCTAAATTCAGTTTCATTACTGGAGAATATAAATACCAAGAAGTATTAAGAAGTATAAAAATAGCCAGAACTGTTACTTATCctacaaaaatatttcagatgtaTCCTATAGAAACACCTATACTGGCAAATTCAGAATTAATGGCACCCTccttcaaaatgacaaaaaaatgcaacgAGGGATGTTACAGTAAGCTTGAACATATAGGAAGGCTATATAGTTTAATTTTAAAGTATGTTTGTTCTCACGTCACTAATCATACCAGAGAgagtaaatgaaattaaaataaatctatgaaagtctATGAATACTCCTTTTTAATACTCTACCTTTTCTTCATGAgatgccttcagctaaatattttacataactGCATGCGATTGGCTGCAACAAGCCACAACAGAGGATATGTTACAGAAACTTTACAGAAggttcatgttttttaaaaaaaaaaacagagtcaTTAAACtatggacagtttttttttaagacattgatcagttctgctacagtattttcattcttttaagAATGATTCTTTGCTAGAGGAAAGGTAAATCATTTCTACAGTTgttgtatatgtttattttatacaattacattttttgacatatatattttgatattcCCTTGACAAGTACTAATAATTCTCGAGTTCACAGTAGCTAGTTTGCATCCTCATTTGTCATGGCTTGAAAGTTCCTAGTACTAAAGGCAAGAACACAGCACCTCTCAAATGGTTACAGGAATATTCttcattcttgttttttctttttttttcttttcaagttTGTTCTTACAAGGTCATTTGCAAACAGTTTTCATCCATTTTTCACATTCTTGGTACTGATAAACAACCTCTTTGCCTGCCTTCATTTATACTTATCAAAGTGGATGTACCCGTAAAATCAAATAGAGATTGTAGTATTATACAGCTAATCAGTTTCAAGAAATAAGCACACTTTTCCAGTGTTCTGCACACTCAGTGTATGCTGCAAAATTTGCGTCAGAATgtggtaaaaaagaaaaaaaaatcttacatgCCCACATTATACTGGTCGATAAAATGAATGACTTGTtcttgtttataaataaaaaggtttccCCTCTGACATATTTCTTCCTAGCttgtgaaaatgtacaaataaatattatatgaaaactgattaaaatggtGACTCATTCAA
>XM_026939519.2
CCCTGCCGCGTGCTGCCACTCCGGAGTTTTTTTGGAGACCTCGGAAAGCGATCCGCGTGTCTTTTTATAAACCTCCCCCATGCACGAGCAGCGCGAGACCACCCCGTCCCGGAGCGTCCCGATCCCGGAGCGCTTTTAAGGAACCTTTTGACCATCACTTTGTGCTTGCGGGAATCCCGGTGCGGGAAGAGGAGTGCGcgtgaggagtgaggagagaTGCTCAGATGGATGTAAAGAGCAGCGTGTGGGTCTGTAATCAGTGAGCtgctttttacacacacacacgcacacacacacacacacacacacacgcacaaacacgcacacgcacgcacggaGGACCGCGCGCTGGAAACGCGGATCGGACCCGCGATGATCGTCTCCACGGTTTGCGTTCTCTTTCCGCTGCTGGACGTCCTGCTGTCTGCAGAAAAGTCCGTGTTTGCTGCAGCGAGCCGGATGGACTGCGTTGGAGCCAGTGAGCTGTGCTTAAAGGAGCCGGGATGCAGCACCAAGTATCGGACTATGAGGCAGTGCATAGCGGGGAAGGAGGGCAACATCAGTGCCGAGGGGAGGGACGAGTGCCGCAGCGCCCTGGACGCGCTCAAGCAGAGCCCGCTGTACAACTGCAGGTGCAAAAGAGGcatgaagaaggagaagaactGCCTGCGCATCTACTGGGGACTCTACCAACATTTACAAGGAAATGATCTACTGGAGGAATCTCCTTACGAGCCCATGACTAGCCGTGCATCAGATATATTTCGATTGGCACCCATCTATTCAGGTGACCCTGCTCTAGCCAAGGAGAACAACTGCCTCAATGCAGCCAAGGCGTGCAACCTGAATGACACGTGCAAGAAGTACCGCTCGGCCTACATCAGCCCGTGCACGAGCCGCGTCTCCACGGCCGAAGTGTGCAACAAGCGCAAGTGCCACAAGGCGCTGCGTCAGTTTTTCGACAAGGTTCCTCCCAGACACAGCTATGGCATGCTGTACTGCTCATGCCCTCCAGGGGACCAGTCAGCCTGCTCCGAGCGTCGGCGCCAGACCATCGTCCCCGCATGCTCCTATGAGGACAAGGAGAAGCCCAACTGCTTGGCACTGCAAGCCTCCTGCAAGACCAACTACATCTGCAGGTCACGTCTAGCGGATTTCTTCTCCAACTGTCAGCCTGAGCCACGTTCTCTTTCTGGCTGTCAGAAAGAGAACTATGCTGATTGCCTACTCTCCTACTCGGGCCTCATTGGGACGGTGATGACTCCAAACTATCTGCGATCCCCTAAAATCAGTGTGTCGCCGTTCTGTGACTGCAGCAACAGCGGCAACAGTAAAGAAGACTGTGAGCAGTTCACGGAGTTCTTTACTGACAACGCCTGTCTGCGTAATGCCATTCAGGCGTTTGGAAACGGGACAGATGCGAGCGTGTGGCAGTCGGCTCCAGTGCAGAGCACCACGGCCGTGATCACTCCATCACACAGAGGTCGAGGACGTGAGAAATCACCCAACTCCCTGGAGCCGGACCTGCACGGCAACCGCCTGAACCCTGGAGACAACTCACTGTATCAGTTCTGTGGAAACCTGCAGgcaCAGAAACTGAAGACCAATCAAACAATAGATGTGTTATGTGTGGACCCTCAGATCAACCCCAGCTCCTCCAACTCCATCTCGGGGAACTCAGCATCTCCGTCAGGCTTTAGCActctgctgctcctgctgctcagCTCTTTGCACTGCTCCCTGGCACTCCTGCTACCCAACCTGGCACTGCTGTTGTAGCCACCTGGCCAATGCAACACATGGACGCTcgtaatttgtattaaaaaaaaaaaatctctgataTATGTTCCAGGTCTACCTGTTGTAATCAccttctctcactgtctcctctCAGTGTTTTTACAGCTCTGAGTTTTATGAGCTTTGGTTTATGCGAAAGGGATTTCAGTGTAACTTGATTTTTCTCTCCGTTCCCTGTTGGGATTTTTCTGTACCTGGAGATGAACAGTGAAAAAGGATGTGCAAGATTTGTTCTTGCAACTTTCGAGACGAACCACAGGCTGGTCTCGGGGGTGAGAGATCATTTGAAATGGTGGTCAAGATGAGTGGGGGCAGCTTTCTTAAGTGTTTGACAAATctcatctgtgtttttttgcgTATGTTGTGTGCGGTACGATATGCATTGACTTCTAACTGGCACACAAAACAGAGGCTTACTGGGAGGTTTTGTCAGTTTCGAGCCTTTTTCCCCACTCttagcataaacacacataGTGTCAGAGACTTGGAGTAACTTTTGGAGGCACACACAAAGTCCAAGGAAGAGTTGATTGCTGGGATTCCTGTTGTGCATGATTATTCTTATAAAATGATTGatttaatctgattattttgGGGGAACATAGCTATTCATATGTGTTCAGTATATATTTTGAGATCGTACTTTGGGTCAGGAAGAATTTTTTTGGGGAGTGTTTGAGCACAGAGAGTCTgaaagagtgtgttacagtgcctGGGTCAGTTTGGCAGTACCAGTTAAACTGCACTGAGCAGAGTGCCTCCAAGTCTATTAACAGTCACCAGTGTTGTATATGATTTCCTCAAACTCTTACATTCTCTCTCCTATGAAACTCCACTGTAATTGTAGCTGTCACCAGTCCAAACTCATCTGTCCTCAAAGTGCACATACATAATGCCTTTACAGTGTAGACCATGCTTGGACCCTTTGCGTCCAAATGAAATACCGTATGTATATTatagtgttctttttttgtgttgtaaTTCCAAGCATTACAGAAGGAGGCTGTGTTATGGCTGTATGCTCAAACCAGATCTTGATCTTAATCAATCCGAAGGTTCGACTTTAAAAGTTTCCTTTGAAACGAACCAGAAAAGCGATACACGCTCACAAAAGCATGTGCAGCTTTAACAGCCGTTGCACATTCGAAGCATTTATGACATGATGTTTGGCTTTTTTAACGGAAATAACACAAGAAATGCATTAATGCATTGCTCTCTTTATTTACAGGGCATCCAGATCTTATTAAGAGacttatttacttaaaataGACTGAGAAAATATGAATTTTGATTTGATAATGCAACGTCTTATCCTACTGCATAAGGTCATAATGACTTGTTTAGataaacatatactgtatacaccaTATAAAGGAATAGACTCCACCTATAATGACTGCTGCCCCAAAGTGTACTACAGAGATTTAATTGAATACTAAACTAttgtttaatggtttaaaaaaaggaagggaaaagtaaagaaggggaaaaaaactcttATTTTTGTATCTTTTGCATTGTGAGTTTTCTTTATCACAAAACTCTTGCCCGTGCTAGCAACAAAGTTATACGAGTTATAACTGTTGCAGTAAAGCTTTTACAGATGGCATTAGCAGGTCTAGATGGGCATTTTAGGGGCAGATGCATTGCCCTGCTGTGCATTAAAGGCTACACTGAGTGTACAAAACACAATACTTCTGGACATTACAGGGCATTTTCTGACTATTTGACTCTCATTATGGCCATCTGCTAATCTGCACAATTCATTTCTCTTTCAACAGTTGGCCCTTTTCATCTTTGGTGTGCTGGATCATTCGGGATACACAGTGATGTGCTTAAAAAGGTCCCAGCATTAATCGCATTTTTATCTTTTGCCTCAATCCATTGGCATTTCTCTATATTTTTTGTCTAAATTCAGTTTCATTACTGGAGAATATAAATACCAAGAAGTATTAAGAAGTATAAAAATAGCCAGAACTGTTACTTATCctacaaaaatatttcagatgtaTCCTATAGAAACACCTATACTGGCAAATTCAGAATTAATGGCACCCTccttcaaaatgacaaaaaaatgcaacgAGGGATGTTACAGTAAGCTTGAACATATAGGAAGGCTATATAGTTTAATTTTAAAGTATGTTTGTTCTCACGTCACTAATCATACCAGAGAgagtaaatgaaattaaaataaatctatgaaagtctATGAATACTCCTTTTTAATACTCTACCTTTTCTTCATGAgatgccttcagctaaatattttacataactGCATGCGATTGGCTGCAACAAGCCACAACAGAGGATATGTTACAGAAACTTTACAGAAggttcatgttttttaaaaaaaaaaacagagtcaTTAAACtatggacagtttttttttaagacattgatcagttctgctacagtattttcattcttttaagAATGATTCTTTGCTAGAGGAAAGGTAAATCATTTCTACAGTTgttgtatatgtttattttatacaattacattttttgacatatatattttgatattcCCTTGACAAGTACTAATAATTCTCGAGTTCACAGTAGCTAGTTTGCATCCTCATTTGTCATGGCTTGAAAGTTCCTAGTACTAAAGGCAAGAACACAGCACCTCTCAAATGGTTACAGGAATATTCttcattcttgttttttctttttttttcttttcaagttTGTTCTTACAAGGTCATTTGCAAACAGTTTTCATCCATTTTTCACATTCTTGGTACTGATAAACAACCTCTTTGCCTGCCTTCATTTATACTTATCAAAGTGGATGTACCCGTAAAATCAAATAGAGATTGTAGTATTATACAGCTAATCAGTTTCAAGAAATAAGCACACTTTTCCAGTGTTCTGCACACTCAGTGTATGCTGCAAAATTTGCGTCAGAATgtggtaaaaaagaaaaaaaaatcttacatgCCCACATTATACTGGTCGATAAAATGAATGACTTGTtcttgtttataaataaaaaggtttccCCTCTGACATATTTCTTCCTAGCttgtgaaaatgtacaaataaatattatatgaaaactgattaaaatggtGACTCATTCAA

Function

symbol description
gfra1a Enables MAP kinase kinase kinase activity. Acts upstream of or within enteric nervous system development and protein-containing complex assembly. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in nervous system; pleuroperitoneal region; presumptive enteric nervous system; and vagal neural crest. Orthologous to human GFRA1 (GDNF family receptor alpha 1).

NR:

description
GDNF family receptor alpha 1 precursor

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process

KEGG:

id description
K19895 GFRA; GDNF family receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939518.2 True 4997 mRNA 0.44 10 30920905 31006462
XM_026939519.2 False 4895 mRNA 0.43 9 30920905 31006462

Neighbor

gene id symbol gene type direction distance location
trnag-gcc_2 NA coding downstream 165429 30755406 ~ 30755476 (-)
LOC113541964 NA coding downstream 167227 30746232 ~ 30753678 (-)
fam204a fam204a coding downstream 201205 30705014 ~ 30719700 (-)
LOC113542166 rab11fip2 coding downstream 278747 30623249 ~ 30642158 (-)
LOC113542134 LOC108263607 coding downstream 462785 30447258 ~ 30458120 (-)
si:ch1073-126c3.2 NA coding upstream 16199 31022661 ~ 31025845 (-)
LOC113541870 LOC108263097 coding upstream 512578 31519040 ~ 31524900 (-)
slc30a10 LOC108263333 coding upstream 607140 31613602 ~ 31620331 (-)
gphb5 gphb5 coding upstream 990047 31996509 ~ 32006650 (-)
esr2b esr2 coding upstream 1124985 32131447 ~ 32188847 (-)
trnag-gcc_4 NA non-coding downstream 60399 30860436 ~ 30860506 (-)
trnag-gcc_3 NA non-coding downstream 68898 30851937 ~ 30852007 (-)
G55449 NA non-coding downstream 297700 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 302718 30504336 ~ 30618187 (-)
G55400 eif3a non-coding downstream 443295 30472604 ~ 30477610 (-)
G55992 NA non-coding upstream 316692 31323154 ~ 31323464 (-)
G56173 NA non-coding upstream 626633 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 650589 31657051 ~ 31675951 (-)
G56279 NA non-coding upstream 722311 31728773 ~ 31730112 (-)
G56271 NA non-coding upstream 810791 31817253 ~ 31827134 (-)
rsrp1 rsrp1 other downstream 576367 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 667449 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 759681 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 798083 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 809744 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 539439 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 557093 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 671921 31678383 ~ 31830932 (-)
G56272 NA other upstream 821352 31827814 ~ 31829484 (-)
G56303 NA other upstream 830720 31837182 ~ 31838235 (-)

Expression


Co-expression Network