LOC113542166 (rab11fip2)


Basic Information

Item Value
gene id LOC113542166
gene name rab11fip2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30623249 ~ 30642158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939520.2
CTTCTAGCCAATCCCTGAGCAGGAGGCGGGACTTGAACGAATATGGGTGGGGAAAGATAACGCCTTCTGTTTCGGACTGTCTCGTTATTTGGCTGTAAGTTGAATTGTTGTgggacaaataaaaacattgtgtgTTGTGGAAAACAGGAattggaaggaaggaaaggaagcaAGGTGGATTATATTGTGTCACGTATCTTCGCAGCCtggaaataatgatttaaagGTTGCTTGCTCCTGTGGGAGATGCGTGGAGGTGGAGATGCTTCTGAAGCCATGGCCTAAATGAGGAACCATGCCCATGAAACTGGACCTGTTTCAGTTATTTCCACTGGTGCACTGGTAAAGTTTGGCTTTGCAGTAACATCACTATTCTAAATTATGTAACACTCATGATCCACCCCTGATCAAGCCATGACCGCCTGATCTTTTTAAGTTTTCCACAGTATTTATTCCTTAACACCATTAAACCCCCCCACCGATCACAATGTTACTGGCCGAGCAGTCGCAGAAATGGTTCCCCACGCACGTCCAAGTGACCGTCCTTCAAGCCGCAGACCTCCAGGCGAAGGGCAAGAACGGCACCAACGATGCCTACACGATCATCCAGCTCGGGAAGGAGAAATACTCCACGTCAGTGGCAGAGAAGACGCTGAGTCCCATGTGGAGAGAGGAGGCTTCGTTTGAGCTGCCAGGGCTGCTGGTGGAGGGCAACCCTGAGGTCTACGAGCTGTGTCTCATAGTGATGCACAGGTCTCTGGTCGGGATGGAcaaatttctgggccagaaaaccATCAACCTGAATGAGGTGTTTGACAACAAGGAACGAAAGAAGATCAACTGGTACACCCTGGATTCCCGTccaggcaaaaagaaaaaagagcgaGGGAAGATCCAGGTGAGCATCCAGTTCATGAGGAACAACATGACGGCCAGCATGTTCGACCTGTCCATGCGCGACAAGCCGCGCTCACCGTTCTCCAAGCTCAAGGACAAGGTGAAGGGTCGTAAGCACGACTCGGACGCCTCTTCGGCCATCTTGCCTCGTTCGGCGCAGTGCGATGCTGAATCCCAGCTTCCTCAACATGTCTCAGATCAGAAACCTCAGCGCACGGCTGCTGCGCTGGAGCCCAAACCCAAGCGCTCGCTCCTCACTGGGACTCAGAAACTCTCAGCTGCACACTCCATGTCCGATCTAGTAGGAACGCACTTCAGGCCCAAGACGGACTCCGTAAACTCTTTGGAGGAGAGCGGTGGCGTTCCTCCTCACCGCCGCTCTCAGAGTGAGATGCCTGATTACCAGGACGGCGAGATGGCGGGTGACCCGTTTCTGGAAATTCCACAGAAATTCGCCACGCTCCCGCGCAACCGCAACCCCTTCGAGTCAGACCAGGGGCAGCTGTGGGAcaaaaaggagaagaaggagaaggtcAGCTTGCTGGAGCGCGTGACGGGAAAGAAGGAAGGGAAGAAGACGAGCAACGGAGGAAAAGCGGGAAGTTCAGGGGACCTTCGCTCCCCAAATCCTTTCACCACTGAAAGTGATACTAACCCCTTCCTGCCACATCACACACCCAGTGATCACGCAAAAAAACCCATCAGCAATGAAGACTTGAGTAAGAAAAACGTTTCTCCGGAGAAAAAACAAGGAAAGAAGACCACAAGAGAGTctGAGGCCGATCAGCTCCAGAGCAGCATGGCGGCGTACAGCAGCCTCTCGTTCCAGGAGGTTGTGCAGGAGTTGATCAAGCAGAAGGAGGTTGTGAAGAAGAAGGACGCGCACATCCGCGAGCTGGAGGACTACATCGACAACCTGCTGGTCCGAGTCATGGAGGAGACGCCGAGCATCCTGAGGACGCCGTACGAGCCGAAGAGGAAAGCGGGCAAGATCTCCAAGAAGTAGACGTTGAGCATAGCGTTGTATCATTATAAACGGTACAAGTAGTGTTACAAAAAAGTTACAAGAAGCAATTCTGATTAACGGTGATCTCGTAATCACATACTTCTCTTAGTTTACATGTTAATCAGAATTCAGTGACTCAGATtgtatgacattttaaaaattggtgACCAATTGAAGGACTTTCGTGCCAATGCCAAACACTGGCTAAGCTTTTTATTATGTGGTCTCTTGTTTATACACTGATATTTGTAAATACATTGTTGTGTCATTTGTGTGGCGGTGTGGGAGAACCCATCGGATGTCACTGTAGCCATAAAATAAGAGGAAACAAATCTGGTTTTGGTCAAAATCTATCTATAAAAATACTTTagcatggaaatgttttatttacttttaaagcGTGCCTAGGATTTCTGCAACAATCATCTTTAACAAACAACGTTACAAACAGTCTGCATAAAGACGTCACTagctaaaaccttgctagctaagtgtgatgtcctcacacagtgaatgtcaagCTTTGATcgagttgttggatagctacatgTCATAACGAAATGGACAGAATCTTAAACAATTCAGTTGATTAGCGGCTGTCAAGATGTCCCTGATGCTCCTGTGCTACAGTCGGATTCAAATCTTTACATATAATttttacagagacagagagagagtcagatagtagaaaatgtcaaaatttcacatgtgaaggGTTTGACCAGGCTGctacacaaatatttacaatttctttaatttttttttttagctagcttTAGATATAAGAAGTGTGTTTAAGAAGACCAACATTGCGATCACACCGAAACTGACTGTGAGAGGCTGATTTTACACAATATGAACAAACATTTaatatacttttttctttcataatgcACTTCACTTCATAAAGCCTTTTGGTTAATGAATCCTATTCATACTCAACAGTACTGTTCCCATGTCAGTCTCATCTTTCACctttgtgggtgtgtgagcGAGCATAACGTTGTGTTTGGAGGTGATCAGTTGTTACAGGGTTGCGAGTACGAGTGATGTCTGTTGTGTTTACTAGAAAGAGCGTGTAGTTTACTGTGACACCCAGCCAGCAGGGTTACTACACTGTTTACTATGGAATGGATCTGAAACTCGTCTACCGTCGCTCCATCCGTTCCTCGGTACGAGTGGTACATCACTGCTGACAATGCTTCAGTTACAGatacagaggtgccaacatttacgATTTAGCCGTAGAATTTACGATTTTTGATCCTTGTTACAAAAATACGAGAGACGCCTGAAAACTATTTCAGGTAAAGCAGCagttaaatgtgaataaaattcacctgGCGGGAAAGCCGAtacactgaaggggaaaggacgcaggaAGTGAAAGTCGCCATTACTTTCGCTTCACGCCAAAGTTATTTAGTGAAATCTGATCTGCGAAtcttgtgagccagtagaaaaCAAGTGAGCATGACTGTGGTCTCTGGTGGGAAAAACAATAGAGAAGCTACTCATTATTTAGCCGAACTTTTGCTTCacgtctgaaaaacaaacaaataattagaTGGAAATTTGCAGTCTTGTCAACCAACATGCCCTAGAGaaattatttctctctctgcctcctaggattttcttgttagaaATGTCGGCACCTCTGCAGAAATGTTATCACTACTGTCAGTTATTCCTATTACTGATGATTCTTTGAGCAAGTACTAAAAtcgtaattttttttctcggtACTTGTTATGAAACAATACACTGGACTGATGCACAGTTACACTACTGAGTATTTAGCCTAACGCTGAATGAAATAAGGCTCATGCTACTAGGATTCTTTAAAATTCTGTACATTTTAACTGTAcaagtttaaatttaaaatatacaaaattcatattaaaatttctctcttttttttagttttcatttcttGAGTGTTCATTGGCGGAAATGTCAACAATTGAAACTGCTTGCTTACTTTTTTGAAAGTTCGCAGGGTAGGTTGGttgaattttgaattaaatttgaGATTGAACTTTGAAATGTGTTCTGCTGCCAAAAtttgcatttgattttttttttttttttggggggttt

Function

symbol description
rab11fip2 Acts upstream of or within neural crest cell migration. Predicted to be located in membrane. Predicted to be active in endosome and phagocytic cup. Is expressed in hindbrain; neural crest; and pharyngeal arch.

NR:

description
PREDICTED: rab11 family-interacting protein 2

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939520.2 True 4006 mRNA 0.44 6 30623249 30642158

Neighbor

gene id symbol gene type direction distance location
LOC113542134 LOC108263607 coding downstream 165129 30447258 ~ 30458120 (-)
rhd LOC108263215 coding downstream 246200 30368672 ~ 30377049 (-)
eif2ak2 NA coding downstream 270955 30345121 ~ 30352294 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 448129 30163347 ~ 30175120 (-)
LOC113542130 NA coding downstream 474325 30140946 ~ 30148924 (-)
fam204a fam204a coding upstream 62856 30705014 ~ 30719700 (-)
LOC113541964 NA coding upstream 104074 30746232 ~ 30753678 (-)
trnag-gcc_2 NA coding upstream 113248 30755406 ~ 30755476 (-)
gfra1a gfra1a,LOC108263696,LOC107666504,LOC107568111,LOC108442611 coding upstream 278747 30920905 ~ 31006462 (-)
si:ch1073-126c3.2 NA coding upstream 380503 31022661 ~ 31025845 (-)
G55449 NA non-coding downstream 44 30619177 ~ 30623205 (-)
LOC113542125 NA non-coding downstream 5062 30504336 ~ 30618187 (-)
G55400 eif3a non-coding downstream 145639 30472604 ~ 30477610 (-)
G55351 NA non-coding downstream 208780 30355571 ~ 30414469 (-)
LOC113541972 NA non-coding downstream 221853 30397412 ~ 30401396 (-)
trnag-gcc_3 NA non-coding upstream 209779 30851937 ~ 30852007 (-)
trnag-gcc_4 NA non-coding upstream 218278 30860436 ~ 30860506 (-)
G55992 NA non-coding upstream 680996 31323154 ~ 31323464 (-)
G56173 NA non-coding upstream 990937 31633095 ~ 31633326 (-)
LOC117596876 NA non-coding upstream 1014893 31657051 ~ 31675951 (-)
rsrp1 rsrp1 other downstream 278711 30340399 ~ 30344538 (-)
runx3 runx3 other downstream 369793 30198325 ~ 30253456 (-)
khdrbs1a khdrbs1a,LOC108263614,LOC108426153,LOC107679143,LOC107597656,LOC107724614 other downstream 462025 30152908 ~ 30161224 (-)
G55209 LOC108263435 other downstream 500427 30111831 ~ 30122822 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other downstream 512088 29879295 ~ 30111161 (-)
LOC113541990 NA other upstream 903743 31545901 ~ 31548633 (-)
G56150 lclat1 other upstream 921397 31563555 ~ 31600685 (-)
fndc5a fndc5,LOC106918218,LOC106948404 other upstream 1036225 31678383 ~ 31830932 (-)
G56272 NA other upstream 1185656 31827814 ~ 31829484 (-)
G56303 NA other upstream 1195024 31837182 ~ 31838235 (-)

Expression


Co-expression Network