fam83b (fam83b)


Basic Information

Item Value
gene id fam83b
gene name fam83b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26873228 ~ 26887079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939529.2
CAAACAGGTCTGTTGCCTGTGGCCAGGGAGAACGTTTCAGTTTTATGAATCTCCACCCATTCTTCTTCCCAGCACTTTTCAAGTTGTGACATCTCCggttcttttttgtttcctgCCTTCACTCGGCAGCAGTAAAGATTCATATTTCTTTTCAACTCTTCAACATTTAATCTCTATTAGAAATGGATTAGAATTGGATAGAAATGCATTACCAACACTCCAGAGGATCTTCCTGTAACTGACCGTTCAAGTGGTGGCTACTAGTCTGCTATTTTGAGGAGAGATGATCCAAGGCCCAGGCATAATGGAATCCAATCTATCTATGCTCTCATCCTTGAAAGAGGACTTCAGCACTGAGGATTTCATCCTGCCACATTATAAGGAAGCTTATCGGCTAGCCATTGACTGTCTTGTCAGTGGTGGCAAACAAATATATCAAGAATTCATCCAAGCTGAGAAAATCGCAAGCTTCCTTTCTGAGGATGAGATTGACTTCATAACACAGAATACAGAACAACTACCTGTCAGTGAAGACATAGAGGAGGTAGAGAGTCCCAGGGATGAGGAGGCCTCCACAGGGACATACTGGCCCACACATTCCGATGCTGCTCCTCCAGACTTGGATCTCGGTTGGCCAGAGGTCATGCACAACAGACTCCAGACCAACATAGACCTGCTTTACCATCCACCCAGGTTAAACAGCCCCACCATCAAGGAGGTATTGAGGAAAAATATCCAAGAAGCTAGACAGGTCATTGCAATTGCCATGGATGTGTTTACTGATgtagacatttttaaagagGTAGTCGACGCATCTATCCGAGGTGTTCCCGTGTATATCCTTCTGGATCACATTCATTTCAAAGGCTTTCTCACTATGACTGCAAACCTTGACATCCAAATTCAAAGACTCAGGAATATGAGGGTGCGCACAGTGCAAGGCCAGGAGTATGTTTGCAAATCAGGAGCCAAATTCCGTGGAGGCATGGGACAGAAATTTCTTCTAGTCGATTGCCAAACAGTGTTTTTTGGATCATACAGTCTCATGTGGTCCTGTGAAAAGATCCACCTGAATATGGTTCAAGTCATAACCGGTGGGTTAGTGGAGTCTTATGATGAGGAGTTCCGGACTCTTTACGCCCGCTCCAAAATTCCAGTTGAGCTCCAGTCTCAGGAAGTCTTGCCAGAACGAAGGATCAATGGCAAAACTGAGAATTACCTTGGCCATCCCATCAGACCCTTTCAAAGGAAGGATAATTTGAGGCATACACTTGACTCTGTGTATCGACAAACCTGTGAAAGACAAGCAGGCCTTAAGAGCACGATGGAAGAGCTTCATATGCCTCACCATAGTAGATTTCTTCAAGACGCATTGGAGTTCAACAAGCGGCACAGCTATGCAGGGGAGCAACGGGAGCTCTCACACATTATTCAGCACCCCAGGTATGGCGCCAGTAACTGGAATGTGGCAGAAGATATCAGGCGTTATGGGGGGAACTACTCTGCTGCTATGGAGAACCCCTATGAAAGCTCCAGATTAAACTTTCTGAACAGGAGTGCTAACTTGCGCCAGTCCTACCATGGTCATGATAAACAGGTTCTCTCAATGCAGCAAAACTTGCCAAGTTTGGCAAATACCTCCAAATCTTTTTTGCGCACATGGAGGATAGAATCCTACCTCAACAACAATGACGCACCCATTGGAGAATCATATGATTATCTCGACCAATACGAGATGGAGAACAAACCTGTTCCTGCAATGCCCTCTCGTCTTAGGTCGTCACTGGTTTTTAGGTCCATCATCCCAGAGGATTCAGAACCTAACAGTTACACAAATGATTCCTTATCATCTGTACGCCGTGAGGATCAATTTAGAATACAGCCAGGTGCAAAGTACTATTCCTCAACGCAGTGGAACCAAACAGATTTAATGGACAATCGAGTCCAACCTGATGACTTTATGTTAAAGAGACGGAGTATACAGGTCCCAGACCACTCAGGGAACAATTTAGGCTTTGGCTCAGGAAGAGATATAATATATGCCAGTCTTGGCAGAGCTAAAAGCCGATTTCAGGTTAAGGAGCATGAGGTCCTACAAGACAACTTGTACAAAAGGCATAGTGTAGCAGACCCTAGGCATAACACATATAATAGTAACAACAAAGAGACTTCTAGCCATATGTATGGACAGCTGTTGAGAAATCAAACAGATAAAGATCCAGTAGTTGCGAATTCGCAAAGTGGAGGGTATCCCCAAAACCTCAAAGAGGACCAGAGATCCATCTCACATTATGACGTcaaaaagtgtgaaagcaaTGATGCGCAACGCGCTATTTGGCAAGAACCTCCCTCAAGAACCATGTCAGCAACAGTTCTAGAAGTGGAGGCCATCAACCAGAACAAACCCAATGTAATATCATCACCACGGTTCTTTAAAAATAGCaccaagaaaataaaatcactccTAAACATTCCAGAGAAGCGGGATAGCTCACCGAAAAGAAAGCACATTTCAAGCCTTAAAACAGATGGCAGCTCTGACACCATTATTTCTGATGACAATGAATATAAAGCACAGCAGGATGAGAAACAGCAGAGCTCCACAGCCATTTCTATGAAATCCACTGACAGCAGCATGTTGAAAAGGACAAATGGGAGGATCTCTGGAAACGAGCATCCTGCTGCTGTCTTGACCGGAGAATCATCTGCTCCTCGTTTTAGTACAGAGGAGCTCCACAGTGATGGGTCTGTGAGAACACCAGATCGGCTGTATTCCAAGAGTCAGGACAGTAGAAGAAATTTGGCACAGGGCACCACCAGTCAGTGGCAGCGAGAGCAAGTTGGAGTGAATAGGGTGTACAGCCGTTTTGAGCCTCTTTGTTCCTTTGAGACTAAACGTACCTCTTCAGGACAGGGCACCACTGCATCCTTAAAtaaaacagagagacaaagaagcTCTCTCGTTACAAGAGGAAATACAAGTACTGATCAGAGCAACCATATAGCTCAACACACGCATGgccatgaaaataaattaggACGTTTCATACAGAGGGTTGGAAATTTAATAACCAAGAATAAGTAACTCAAACGATACAGTATGTAGAAATAAGGGAAGAGCTGCTTTCTTGGACTTTTTAATTGGCACTTCGTTAAACAAATACTATCATTTGTTTTCAACTTTTGTCATTCAAAGCAGAGAGAATCCTATATGATCAATCTGCTACATTATTGCTTGGGGGCAAAAAAACAATTCCATTAACTGCACTGCAGAAGAAAATAACTTACTTTAGTGATTATCTAACTTCACCTTTGTCTAATTTGAAAATGAGTGCAATATGTTACATTGGACTACTCGTAGCATTGGGATTGAAACATGTACAATATGTACCTTCTCCTGCATATGTTCCTGATTTTCAGGTCCAAAGACACAAGAGGATCCAGAACCcagtatttatgtatttctgtagcCATGACAATCAATTTGGAATACAATCAGATGCACAATACTACTCCTCAATGGAATCAAGCAGAATTAGTCAATAGGCATGTTCAACCTGATCAGTTTATATTAAGCACACAACATATGCAGGTTCCACTCCACTCAGGAAGCAATTGATAATCCTTCAAGGACATCTGTTGATTCGACTGTTGTTACCTGAATTGTTTACATTTGTAATTAAAAGGTGTTTTTAGACAATGTTTTTACctcaaaatgtgcaaaatgttatAATACTTCTTCAGAATGTGGGCGGTGTTAACATAATGAAACTTCTGTCATGGGACATGTCAAGGGATTTATACCAAACAATGACCAATTTGTGAATAGGAAAACAAATTAAAGTTCATTGTGAGTTAAAA

Function

symbol description
fam83b Predicted to enable protein kinase binding activity. Predicted to be involved in epidermal growth factor receptor signaling pathway. Predicted to be active in cytoplasm and membrane. Orthologous to human FAM83B (family with sequence similarity 83 member B).

NR:

description
protein FAM83B-like

GO: NA

KEGG:

id description
K23930 FAM83; protein FAM83

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939529.2 True 3861 mRNA 0.42 5 26873228 26887079

Neighbor

gene id symbol gene type direction distance location
mlip mlip coding upstream 8091 26830224 ~ 26865137 (+)
LOC117596838 NA coding upstream 63720 26803195 ~ 26809508 (+)
lrrc1 lrrc1 coding upstream 74716 26755660 ~ 26798512 (+)
eloal LOC108263752 coding upstream 137222 26727249 ~ 26736006 (+)
fbxo9 fbxo9,LOC107712342,LOC107751337 coding upstream 188720 26670892 ~ 26684508 (+)
hcrtr2 hcrtr2 coding downstream 18418 26905497 ~ 26923251 (+)
gfral gfral coding downstream 38155 26925234 ~ 26933750 (+)
bag2 bag2 coding downstream 320249 27207328 ~ 27213122 (+)
si:ch73-52p7.1 LOC108262847 coding downstream 357872 27244951 ~ 27257879 (+)
olig3 olig3 coding downstream 387437 27274516 ~ 27276329 (+)
G53172 NA non-coding upstream 73710 26798698 ~ 26799518 (+)
G53092 NA non-coding upstream 320076 26552936 ~ 26553152 (+)
G53091 NA non-coding upstream 320506 26552518 ~ 26552722 (+)
G53090 NA non-coding upstream 320943 26552075 ~ 26552285 (+)
G53083 NA non-coding upstream 334708 26538234 ~ 26538520 (+)
G53280 NA non-coding downstream 46859 26933938 ~ 26934265 (+)
G53363 LOC108263596 non-coding downstream 130882 27017961 ~ 27018846 (+)
G53316 NA non-coding downstream 146770 27033849 ~ 27036808 (+)
LOC113542178 NA non-coding downstream 168685 27055764 ~ 27056998 (+)
LOC117596898 NA non-coding downstream 171799 27058878 ~ 27068180 (+)
bcl2l11 bcl2l11 other upstream 1008882 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 1026325 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 1278292 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2470774 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2815330 24055154 ~ 24057898 (+)
G53328 NA other downstream 98899 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 310830 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1313956 28201035 ~ 28301823 (+)
G53692 NA other downstream 1560298 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1579009 28466088 ~ 28496606 (+)

Expression


Co-expression Network