rps6ka2 (rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344)


Basic Information

Item Value
gene id rps6ka2
gene name rps6ka2,LOC107750746,LOC107717821,LOC107702677,LOC105021344
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 28116760 ~ 28148448 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939545.2
ATGATTGGTTAGTACttaatacacacaaaataatcCGCCAATTACGCACGGGCGGCTGTGTGTGAAGATGAGCCACGGAGGCGGGATTAGTGAGGAAACGGGTAGAGCCAATGCCGCTGTGCGCAGGAGTGAAGCGGCCCGGGACCGGGAGGAGGCAGCGCGCCGGGATTGGCTGCGTAAAGGCACTGAGCTGAAGGTAGAGCTGAACAGGTCTCACTGACGccacacaggagagaagaaGGATGCGAAAAGACACTGATCCGCGTCACATCGCCGTGATCCTGCACTAACCCTGCACAGCACCCGTCCGCGGGTCTGAATTCGCCGTCTCTCATCCAGCGCCTAACAAAACTCCGCGTTATGGATTAGACAGAAGGCAGGTCGAGAAGCCACTGTAAACCCCCGTGGCGCGGTGTGTGATCCGGATTTCCAGTGGAGGATAAGACTCAGTTCAAGCCTCAAGCGACAGAATCAGGACCATGGACGCGAACATGCGGAAATTCACAGTCCGGAGGTGGTTCTCGGTTTACCTGCGCAAAAAGACGCGCTCCAAAAGCTCCAGCTTGTGCAAACTCGAGGATGACAGTATCCTGAAAGAGATTGATATAAGCAATCATGTGAAAGAAGGCTTCGAGAAAGCTGACCCGTCACAGTTTGAGCTTCTTAAAGTGTTGGGACAAGGCTCCTATGGCAAGgtatttcTGGTGAGAAAAATTAAAGGCTCAGACACAGGGCAACTCTATGCCATGAAGGTGTTAAAAAAGGCCACTTTGAAAGTGCGTGACAGGGTGCGATCCAAAATGGAGAGGGACATTCTTGCTGAAGTGAATCATCCCTTCATAGTGAAACTTCACTACGCCTTTCAGACTGAGGGAAAACTGTATCTCATCCTGGACTTCCTAAGAGGAGGCGATCTCTTCACCCGTCTCTCCAAAGAGGTCATGTTTACTGAGGAGGATGTGAAGTTCTATCTGGCTGAGCTGGCTTTAGCTCTGGACCATCTTCACAGCCTGGGAATTATCTACCGTGACCTCAAGCCAGAAAACATTCTTCTTGATGAGGAGGGACATATAAAGATCACTGATTTTGGTCTGAGTAAAGAAGCGATAGATCATGACAAGAGAGCGTACTCATTCTGTGGGACCATCGAGTACATGGCTCCAGAGGTAGTCAATAGGAGAGGACACACACAAAGCGCAGACTGGTGGTCATTTGGCGTGTTGATGTTTGAAATGCTGACTGGATCGCTGCCATTTCAAGGCAAAGACCGCAAGGAGACCATGGCACTTATTCTCAAGGCAAAGCTTGGCATGCCACAATTCTTAAGCCCAGAGGTACAAAGCTTACTGCGAGCACTTTTTAAAAGGAATCCAACCAACAGATTAGGTGCTGGACCTGACGGAGTGGAAGAAATCAAAAGGCATCACTTCTTCGCAACCATAGATTGGAACAAATTATACAGGAAGGAGATCAAACCTCCGTTCAAACCAGCAGTTGGCAGACCAGAGGACACTTTCCATTTCGACCCTGAATTCACTTCCCGCACGCCAACAGACTCACCCGGTGTTCCTCCCAGTGCTAATGCCCATCAGCTTTTCCGTGGTTTCAGCTTTGTGGCCACCAATCTAGGACAGGAGCAGTGTATAGCAGAGACCAGACCGAACTCCATCAATCCTATAGTACAGCAACTTCATAGCAATAACATCCATTTCACTGACGGCTATGAAATAAAAGAGGATATCGGCGTTGGCTCGTATTCAGTATGCAAACGCTGTGTACACAGAATCACCAGTGTGGAATATGCAGTTAAAATCATAGACAGAGCTAAGAAGGACCCGTCTGAGGAGATTGAGATCCTGTTGCGATATGGACAACACCCCAACATCATCACTCTGAAAGACGTCTATGATGATGGGAAGTTTGTGTATCTGGTTATGGAACTGATGCGTGGAGGCGAGCTGCTCGACCGCATCCTGCGCCACAAGGGCTTCTCAGAGAGAGAGGCCTCTGCTGTGCTCTGCACCATAACCAAGACTGTGGAGTATCTACATTCACAGGGGGTTGTACATCGAGACCTAAAGCCTAGCAATATCCTGTACATGGATGAGACGGGTGACCCGGAGTCGATAAGGATCTGTGACTTCGGCTTCGCAAAACAACTCCGGGCTGAAAATGGCCTCCTAATGACCCCTTGCTACACTGCCAACTTTGTGGCTCCAGAGGTTCTGAAGAAGCAGGGATACGATGCTGCTTGTGACATCTGGAGTCTGGGAATCTTACTGTACACCATGCTCGCAGGATTCACGCCCTTCGCCAGTGGACCTGATGATACCCCAGAGGAAATCTTGGCTCGAATCGGCAGTGGCAAATACACCCTCTCTGGGGGCAACTGGGACATGGTGTCTGATGCTGCTAAGGACATCGTGACTAAAATGCTGCATGTGGACCCTCACCAGCGGCTCACCGCACCTCTGGTCCTCCGTCACCCCTGGATTGTAAACCAAGAGCAGTTATCTCTGAGTCAACTCACCCGACAAGATGTGCACCTGGTCAAGGGAGCAATGGCTGCTACATATTCAGCTCTTAACCGAACGCCACAGGCTCCAAAGCTGGAGCCTGTCCTTGCTTCCTGTCTGGCTCAGAGAAGAGGAATGAAGAGAGTGACGTCCACTTGCTTGTAGCACACAATCAAACAGCACCACCTATAGGCCCTGAAGACCTTCAAGTGTCAAGCCTGGGAGAAGGAACCAGGCAGTCATCAATGCACAAAGGGGAGCATACCATGTGACCGATGTAGATGAGCAATGGTAGAATTTTACCCCACGTATACAGCTTTAGGAAAGTGAGCGACTGAGAGCTGCTCACATTAATGCAGAGCACATTGAGAGTAGATCCAGAGCTTCCCTGCTCTAATCCTGAAATGCGACACAGCCAGGAAATTGTAGTGTTTAGATAATATCACCAACCAAGAGCACAAATAACATAACCTGCAAGCTCAAGCTGTGATGGCTGTCATGTGTCGCGAGCCATGTCGAAATGTTTGGACCTGACTGTTGTCATATTGAGCCAGAATGATGTCATTCACCATCTGGTTCTGGTTGTAATAAATTTACAGTAAGTGTGCCCAGAAAATTGACATATTTTTAGTGGACAGCAGGACTGCAGTGCATtgaaacactaacactaaagctcttaaaggaatagttcagcAGGGAAAAAATGTGCAAACACAGTTATCCCTTAGCCAACAACTGTGTTTGGTAAGTCAAGGTGTGTTTGGTTTCCTTATAAAGTTGACTTCTTTAGATATGCACTGGAGTTATACAACTAATACTACTAACAAGGAAGGCGCATAGGTACCtgtacatttcctttttttttttttttttgcagaaccGTTCCTTTAAGCCTATTCAATTTATCTATGAGGTCATTCGACATATACAATGGTGAGCCCTATGAAATAAATGCTTCTTTGGCTATCTCAGGTGTTCAGCATTCAGCACATGTACACAGTGCATTTACATAACCACAGCAGAACAAGCAATATTAAGTACAAGAGACTTTAGTAAATGGACAAGACTATAAAAGATGCCAGCATTATTGACATTTCTTTATCTAATTCCAACATGCATGCAACGTGAGTGGTTTTATGAATGAAAAAGgttcttttttgtcttcttattGCTTAATAGCTTGTCGTGAACTGCttcaaaaatatgattttttttttgtttgttttacaccaAACAATTCAAACAATTACtaactgtattaaaaatatttttgctgaaaaaaagattatttatttattttt
>XM_034302897.1
GTTCCACCAAACCATGGTGTGGTCCACAGCAGGTGAGAAAGCTATCCGCTGCACTCTGAGATGACAGTATCCTGAAAGAGATTGATATAAGCAATCATGTGAAAGAAGGCTTCGAGAAAGCTGACCCGTCACAGTTTGAGCTTCTTAAAGTGTTGGGACAAGGCTCCTATGGCAAGgtatttcTGGTGAGAAAAATTAAAGGCTCAGACACAGGGCAACTCTATGCCATGAAGGTGTTAAAAAAGGCCACTTTGAAAGTGCGTGACAGGGTGCGATCCAAAATGGAGAGGGACATTCTTGCTGAAGTGAATCATCCCTTCATAGTGAAACTTCACTACGCCTTTCAGACTGAGGGAAAACTGTATCTCATCCTGGACTTCCTAAGAGGAGGCGATCTCTTCACCCGTCTCTCCAAAGAGGTCATGTTTACTGAGGAGGATGTGAAGTTCTATCTGGCTGAGCTGGCTTTAGCTCTGGACCATCTTCACAGCCTGGGAATTATCTACCGTGACCTCAAGCCAGAAAACATTCTTCTTGATGAGGAGGGACATATAAAGATCACTGATTTTGGTCTGAGTAAAGAAGCGATAGATCATGACAAGAGAGCGTACTCATTCTGTGGGACCATCGAGTACATGGCTCCAGAGGTAGTCAATAGGAGAGGACACACACAAAGCGCAGACTGGTGGTCATTTGGCGTGTTGATGTTTGAAATGCTGACTGGATCGCTGCCATTTCAAGGCAAAGACCGCAAGGAGACCATGGCACTTATTCTCAAGGCAAAGCTTGGCATGCCACAATTCTTAAGCCCAGAGGTACAAAGCTTACTGCGAGCACTTTTTAAAAGGAATCCAACCAACAGATTAGGTGCTGGACCTGACGGAGTGGAAGAAATCAAAAGGCATCACTTCTTCGCAACCATAGATTGGAACAAATTATACAGGAAGGAGATCAAACCTCCGTTCAAACCAGCAGTTGGCAGACCAGAGGACACTTTCCATTTCGACCCTGAATTCACTTCCCGCACGCCAACAGACTCACCCGGTGTTCCTCCCAGTGCTAATGCCCATCAGCTTTTCCGTGGTTTCAGCTTTGTGGCCACCAATCTAGGACAGGAGCAGTGTATAGCAGAGACCAGACCGAACTCCATCAATCCTATAGTACAGCAACTTCATAGCAATAACATCCATTTCACTGACGGCTATGAAATAAAAGAGGATATCGGCGTTGGCTCGTATTCAGTATGCAAACGCTGTGTACACAGAATCACCAGTGTGGAATATGCAGTTAAAATCATAGACAGAGCTAAGAAGGACCCGTCTGAGGAGATTGAGATCCTGTTGCGATATGGACAACACCCCAACATCATCACTCTGAAAGACGTCTATGATGATGGGAAGTTTGTGTATCTGGTTATGGAACTGATGCGTGGAGGCGAGCTGCTCGACCGCATCCTGCGCCACAAGGGCTTCTCAGAGAGAGAGGCCTCTGCTGTGCTCTGCACCATAACCAAGACTGTGGAGTATCTACATTCACAGGGGGTTGTACATCGAGACCTAAAGCCTAGCAATATCCTGTACATGGATGAGACGGGTGACCCGGAGTCGATAAGGATCTGTGACTTCGGCTTCGCAAAACAACTCCGGGCTGAAAATGGCCTCCTAATGACCCCTTGCTACACTGCCAACTTTGTGGCTCCAGAGGTTCTGAAGAAGCAGGGATACGATGCTGCTTGTGACATCTGGAGTCTGGGAATCTTACTGTACACCATGCTCGCAGGATTCACGCCCTTCGCCAGTGGACCTGATGATACCCCAGAGGAAATCTTGGCTCGAATCGGCAGTGGCAAATACACCCTCTCTGGGGGCAACTGGGACATGGTGTCTGATGCTGCTAAGGACATCGTGACTAAAATGCTGCATGTGGACCCTCACCAGCGGCTCACCGCACCTCTGGTCCTCCGTCACCCCTGGATTGTAAACCAAGAGCAGTTATCTCTGAGTCAACTCACCCGACAAGATGTGCACCTGGTCAAGGGAGCAATGGCTGCTACATATTCAGCTCTTAACCGAACGCCACAGGCTCCAAAGCTGGAGCCTGTCCTTGCTTCCTGTCTGGCTCAGAGAAGAGGAATGAAGAGAGTGACGTCCACTTGCTTGTAGCACACAATCAAACAGCACCACCTATAGGCCCTGAAGACCTTCAAGTGTCAAGCCTGGGAGAAGGAACCAGGCAGTCATCAATGCACAAAGGGGAGCATACCATGTGACCGATGTAGATGAGCAATGGTAGAATTTTACCCCACGTATACAGCTTTAGGAAAGTGAGCGACTGAGAGCTGCTCACATTAATGCAGAGCACATTGAGAGTAGATCCAGAGCTTCCCTGCTCTAATCCTGAAATGCGACACAGCCAGGAAATTGTAGTGTTTAGATAATATCACCAACCAAGAGCACAAATAACATAACCTGCAAGCTCAAGCTGTGATGGCTGTCATGTGTCGCGAGCCATGTCGAAATGTTTGGACCTGACTGTTGTCATATTGAGCCAGAATGATGTCATTCACCATCTGGTTCTGGTTGTAATAAATTTACAGTAAGTGTGCCCAGAAAATTGACATATTTTTAGTGGACAGCAGGACTGCAGTGCATtgaaacactaacactaaagctcttaaaggaatagttcagcAGGGAAAAAATGTGCAAACACAGTTATCCCTTAGCCAACAACTGTGTTTGGTAAGTCAAGGTGTGTTTGGTTTCCTTATAAAGTTGACTTCTTTAGATATGCACTGGAGTTATACAACTAATACTACTAACAAGGAAGGCGCATAGGTACCtgtacatttcctttttttttttttttttgcagaaccGTTCCTTTAAGCCTATTCAATTTATCTATGAGGTCATTCGACATATACAATGGTGAGCCCTATGAAATAAATGCTTCTTTGGCTATCTCAGGTGTTCAGCATTCAGCACATGTACACAGTGCATTTACATAACCACAGCAGAACAAGCAATATTAAGTACAAGAGACTTTAGTAAATGGACAAGACTATAAAAGATGCCAGCATTATTGACATTTCTTTATCTAATTCCAACATGCATGCAACGTGAGTGGTTTTATGAATGAAAAAGgttcttttttgtcttcttattGCTTAATAGCTTGTCGTGAACTGCttcaaaaatatgattttttttttgtttgttttacaccaAACAATTCAAACAATTACtaactgtattaaaaatatttttgctgaaaaaaagattatttatttattttt

Function

symbol description
rps6ka2 Predicted to enable ATP binding activity; magnesium ion binding activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Orthologous to human RPS6KA2 (ribosomal protein S6 kinase A2).

NR:

description
ribosomal protein S6 kinase alpha-2-like

GO: NA

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939545.2 True 3817 mRNA 0.46 21 28116760 28148448
XM_034302897.1 False 3298 mRNA 0.45 21 28121446 28148448

Neighbor

gene id symbol gene type direction distance location
rnaset2 rnaset2 coding upstream 8933 28101372 ~ 28107827 (+)
csmd1a csmd1,LOC106589815 coding upstream 118950 27598114 ~ 27997810 (+)
gsta.1 gsta3,LOC108425408,LOC108425446 coding upstream 579089 27532719 ~ 27537671 (+)
gtpbp2a gtpbp2,LOC108263131,LOC107751133 coding upstream 599073 27507235 ~ 27517687 (+)
LOC113542114 bfsp1 coding upstream 680771 27425842 ~ 27435989 (+)
sft2d1 sft2d1,LOC102776618 coding downstream 4680 28153128 ~ 28170154 (+)
prr18 prr18 coding downstream 23481 28171929 ~ 28173521 (+)
si:ch211-130h14.4 LOC108262915 coding downstream 26220 28174668 ~ 28190525 (+)
tbxtb t,LOC107717823,LOC107660241 coding downstream 42451 28190899 ~ 28195563 (+)
LOC113542058 NA coding downstream 167448 28315896 ~ 28317693 (+)
G53616 NA non-coding upstream 15929 28100613 ~ 28100831 (+)
G53614 NA non-coding upstream 49279 28064643 ~ 28067481 (+)
G53331 NA non-coding upstream 553820 27560172 ~ 27562940 (+)
LOC113542161 NA non-coding upstream 586294 27527865 ~ 27530466 (+)
LOC113541894 wdr92 non-coding upstream 761087 27348910 ~ 27355673 (+)
G53665 NA non-coding downstream 119273 28267721 ~ 28267965 (+)
G53666 NA non-coding downstream 119610 28268058 ~ 28268341 (+)
G53676 NA non-coding downstream 129410 28277858 ~ 28278072 (+)
G53678 NA non-coding downstream 141945 28290393 ~ 28290721 (+)
G53682 NA non-coding downstream 177194 28325642 ~ 28326183 (+)
znf451 znf451 other upstream 909515 27197909 ~ 27207245 (+)
G53328 NA other upstream 1124049 26985978 ~ 26992711 (+)
bcl2l11 bcl2l11 other upstream 2252414 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 2269857 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 2521824 25562402 ~ 25594936 (+)
pde10a pde10a other downstream 52587 28201035 ~ 28301823 (+)
G53692 NA other downstream 298929 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 317640 28466088 ~ 28496606 (+)
ablim1a LOC108263315,LOC108426144,LOC102784938 other downstream 1563810 29712258 ~ 29748505 (+)
G55091 NA other downstream 1789100 29937548 ~ 29941181 (+)

Expression


Co-expression Network