LOC113542293


Basic Information

Item Value
gene id LOC113542293
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4259731 ~ 4274167 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939705.2
TCTCGCGAGAGAAGGTGAGATTCAACATGGCGGCGCCCTGCTGCTGAAACTCTTGTCTGTTCCTTAAAACgtaactcatttaaaaccaAACAGAAAATCTCCGAATCTCTTAAAAGTGGGGGAACTTGAgaaatttgtgaaaatatataatGGCAGACACTTACAAATCCGAAGAGAGATCAGCTAAACCCGAGAAACAAGAGAAAGACGACTCTACTGATACGGAGGATGTAAACACAAGCTCGGTCCAGAGTAAAATGTCCCCATCTGGTCCTCTTCATGCTAAAAACCATGACAGAGGGATTGATGCAGAATTAGGCAAGGAGAGAATTCACTACTGCTCGCTGTGTGGAAGGAGTTTTACTAGAAAAGGTCATCTTCAACGACACCATCTAatccacacaggagagaagccacatcactgctcacagtgcgGAAAGACTTTCAGAGAGCAGAGCAATCTCAAAAaccaccagcgcattcacaccgGAGAGAAGCCGTACGAATGTTCgaagtgtgggaagagttttacacaacagagtaattttaaaaaacaccagAGGATTCACACCGGAGAGAAGCCGTACCAGTGCTCAGAGTGCGGGAAGAGTTTTACAGAACAGACTAATCTTAAAAAccatcagcgcattcacactggagagaaaccGTATTACTGCTCGctgtgtgggaagagttttacacaccatactaattttaaaaaccaccagcgcgttcacaccggagagaagccgtatcactgctcggAGTGTGGGATGAGTTTTTTAGAATTAGGCACTTTAAAaagacaccagcgcattcacacaggagagaaaccgtatcactgctcacagtgtgaaAAGACTTTTAGAGAGTtaagtcatttaaaaacacaccaacgcattcacacaggagagaaaccaCATTACTGCTCAGCGTGGAGGAACTCCAGTGGTCTGGATAATTACtcTGAGAATCTCTTACAGACGAAGGAACCTGAGAAATTTGTATATAACTGCTTTGCAGAATATGTAATGGCGGACACTTACAAGTCGGAAGATTCAGCTAAACCCGAGAAACGAGATGAAGACTCTTCTACAGACACGGAGGATGTAAACACAAGCTCGGTCCAGAGTGAAATGTCGTCATCTGGTTTCCATCAAGCTAAAAACCATCATGGTGGGATTGATGCAGAAATGCGCAAGGAGAGAATTCACAACTGCTCGCTGTGTGGGAAGAGCTTTACTAGAAAGGGTCATCTTAAACAACACCATCTAATCCACACTGGAGAGAAGCCACATCAGTGCTCTCAGTGTGGGAAGACATTTTCACAGCAAAGTAATCTTAAAAACCACCAACGCGTTCACACCAGAGAGAAGCCGTACGAATGCTctcagtgtgggaagagttttacccTGCAGAGTActtttaaaaaccaccagcgcatccacacaggagagaagccgtatcactgctcagagTGCGGGAAGAGTTTTACACTACAGAGTACTTTTAACAACCATCAGCGCATTCACTCCGGAGAGAAGCCGTATTACTGCTCGCAGTGCGGGAAGAGTTTTACACGGCACAGTActtttaaaaaccaccagcgcgttcacacaggagagaagccgtatcactgctcggagtgtgggaagagttttacacTACAAAGTAGCTTAAAAAACCATCAGCACATTCATAGCGGGAAGCTGCATCAgtgttcacagtgtggaaagagtttttcACAGTATAGTACTTTAAAAAACCACCAGCTTATCCACACAGGAAAGAAGCCACATTATTGCTCACAATGTGGGATGAGTTTTAGAGAATTGAGTCATTTAAGaaaacaccagcgcattcacacaggagagaagccacattactgctcacagtgtggaaagagttttagaaaattaagtaatttaaaaacacaccagcgcattcacacaggagagaagccacataactgttcacagtgtggaaagagttttataGAAAAAGGTCATCTTAAACAACACCATCTAATCCACACTGGAGAGAAGCCACAtcagtgctcacagtgtgggaagacaTTTATTCAAAAAAGCAATCTCAAAAAGCACCAGCGCGTTCACACCGGAGAGAAGCCGTACGAATGCTCTCAGTGCGGGAAGAGTTTTACCCGACACAGTCcttttaaaaaccaccagcgcgttcacacaggagagaagccgtatcactgcacaccgtgtgggaagagtttttcACTACAGAGTTCTTTTAAAAGACATCAGCTCATTCACAATGGAGAGAAGCCATattactgctcacagtgtgggaagagcttTACACGatacagtaatttaaaaagCCACCACCGCGTTCACACAGGAGAGCAGCTGTTCTGCTGCatacagtgtggaaagagttttaaagAGTTGACTACTTTAAAAAACCAccagctcattcacacaggagagaagccacattactgctcagagtgtgggaTGAGTTTTAGGGAGTtaagtcatttaaaaacacaccagcgcatacacacacgagAGAAGCCACattactgctcacagtgtgggatgAGTTTTAGAGAATtaagtcatttaaaaacacaccagcgcattcacacaggagagaagccacattactgctcacagtgtgggatgAGTTTCAGAGAGTtaagtcatttaaaaacacaccagcgcattcacatgGGAGGGAAGTCATattactgctcacagtgtgggatgTGTTTTAGAGAATtaagtcatttaaaaacacatcagcgcattcacacaaaAGAGAAGCCACattactgctcacagtgtgggatgTGTTTTAGAGAATtaagtcatttaaaaacacaccagcgcattcacacaggagacaGGCCATATcgctgctcacagtgtgggaagagttttaaacAACATGGATCTTTCAAGgcacaccagcgcattcacacaggagagaagaagtaacactgctcacagtgtgggatgAGCTTTACATAACATGCAGGAGTGAAACCTCattactgctcacagtgtgtgaaatgtttttgtgttggtgtaataagaaaataatcagctcatTTACACAGAACACAAGCCGTACACTCACAGTGTGGGTGTGGTTTACATTATTCATGCGTTGAATTGGAAATGACTATCTTACGTTAAATGTAAACCACAGGCTTTCTGCCTTCTGAAGAGCACTACGACCTGACACAGGCAGAAAGCTAACATGTTAACAGAACAGTGCAAACAAAAAGAGGTTTATGGTTTAATGATCACTTATATGTAAACAAATTATGAGACATCTAAATAGTTACTATTTTCGAAGAGGCATACGTTGGTGTCACTCTTTTCAGTGGCTGGATCTTAAATGTTGTATGGGGTATATAGTGCATCACAACGTAACTGTTTATTTGCAGCTTATTATAAATAGCCAGTTTTAGAGCAATTGATTATCATTAGAACAAATCTAATTCATGATTCTAATTTGATTAGCTACAGTAGTTATTCTGCTCATGCTGACTGTTTAGAATAATATACGCAATTATGTCtagttacagaaaatgtttctgtaataaaaaaaaatgtttggatgtTTGGACTATACATTAATATAGTattatggttttttttccttatgctAGCTTGCAGCAGAAACTGGTCCAAATGCCCTTTAAAATATTTGCGTAGGCCAAAATGAACGTAAAATTTCCCTAGGATATTCATAATTGAGTGCATTTGTTGATAAATTGCAATCACCCATAAAATGCTGGGCACGAGGAAGGCAACAGACTCTATAAAAAGcaacaaaactccataaaaagcaACGCTCGCTGGAGCGGAAAACACAAAACGACTACCAAATGGCCAAAAAAGTTGTTCCCAGAGGCAGAAGTGGAAATACTCAAGTctacaagaataaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939705.2 True 3940 mRNA 0.42 5 4259731 4274167

Neighbor

gene id symbol gene type direction distance location
LOC113542265 NA coding downstream 10908 4229822 ~ 4248823 (-)
galntl6 galntl6,si:ch211-15e22.3,LOC107670789 coding downstream 170213 3877190 ~ 4089518 (-)
galnt7 galnt7 coding downstream 389967 3843479 ~ 3869764 (-)
cep44 cep44 coding downstream 560211 3683443 ~ 3699520 (-)
wdr17 wdr17 coding downstream 826602 3331968 ~ 3433129 (-)
LOC117596921 NA coding upstream 10208 4284375 ~ 4289439 (-)
LOC113542300 NA coding upstream 19329 4293496 ~ 4296129 (-)
sparcl1 LOC108262882 coding upstream 189529 4463696 ~ 4473298 (-)
fam193a fam193a,LOC103156485 coding upstream 237534 4511701 ~ 4540623 (-)
arhgap10 arhgap10,LOC107742542 coding upstream 511606 4785773 ~ 4878809 (-)
G40522 NA non-coding downstream 418571 3792229 ~ 3841160 (-)
G40521 hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 non-coding downstream 418789 3838818 ~ 3840942 (-)
LOC113545372 NA non-coding downstream 421549 3819051 ~ 3838182 (-)
G40323 NA non-coding downstream 546898 3702221 ~ 3712833 (-)
G40316 NA non-coding downstream 585920 3673150 ~ 3673811 (-)
LOC117596430 NA non-coding upstream 214379 4488546 ~ 4496696 (-)
G40770 NA non-coding upstream 263892 4538059 ~ 4539526 (-)
G40936 NA non-coding upstream 391355 4665522 ~ 4665725 (-)
G40938 nr3c2 non-coding upstream 393039 4667206 ~ 4668993 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding upstream 465217 4739384 ~ 4739711 (-)
trnah-gug_3 NA other downstream 1225178 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1225794 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1226928 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1275528 2220147 ~ 2984203 (-)
G39720 NA other downstream 2085980 2173358 ~ 2173751 (-)
dclk2a LOC108263760,LOC108429594 other upstream 270972 4545139 ~ 4609450 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 619735 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 929539 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 1481850 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2887307 7161474 ~ 7204699 (-)

Expression


Co-expression Network