LOC113542300


Basic Information

Item Value
gene id LOC113542300
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4293496 ~ 4296129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939714.2
GACAGAAGACTGTTGTGAAGATACTGcgattaaaaatatatcatctCAACTTGTTTCCACTTGAGTGAAATGTCATCGTCTGCTTCTCTTGGTGCTAAACACCGTCGCAGAAGGAATCATGCAGAAATTGGCAAGGAGAGAATTCACTACTGCTCACtgtgtgggaagagtttcacTAAAAAGAGCTATCTTCACCAACACTATCAAATCCACGGAAGAGCGAAAGCACACAactgctcagagtgtgggaaAAGTTTCGCACGCTTGAGTACTCTCAAAAAACACAAACGgattcacacaggagaaaaaccATATCAGTGCTCAGAGTGTGGGATGAGTTTTACACAACAAAGTACTTTAAAAAACCACCAGCGcgttcacacaggagaaaagccaTATtgctgctcacagtgtggaaagagttttacacTCCTGAGTAATCTCAAGatacaccagcgcattcacacaggagagaagccgtatcactgctcggAGTGCGGAAAGAGTTTTTCACAGCAGAAAACTCTCATAGttcaccagcgcattcacacaggagagaaaccatATTGCTGCTCACAATGTGGGAAAAGTTTTACAATTCTATGTAGTTTCAGAAAACACCAGCgcgttcacacaggagagaagccacaTTCCTGCTCAAAGTGTGGGAAATCTTTTGCACTGAAGGATAATCTCATAAAACATCAGCTcgttcacacaggagagaaaccgtatTACTGTCcgcagtgtgggaagagttttactcagAATAGTCATCTTAAAAGAcatcagctcattcacacaagagagaagccgtatcagtgttcacagtgtgggaaAAGTTTTACAAACCAAGCTAGCTTTAAATCACAccagcacattcacacagatGGGAAGCCATATtgctgctcacagtgtgggaaatGTTATACACGACTGAGTACTCTCAAAACACACCAGCGCACTCAtgcaggagagaagccgtatcgctgctcacagtgtgggaagcgCTTTACACAACGATGCAGTCTCAAAACacatcagcgcattcacacaggagagaagccatatcactgctcacagtgtgggaagagtttcacTCGGAATAGTAATCTTAAAAATCATCAGCTCATTCACACTAGAGAAACACCATTATAGTGCTCATAGTGTTGGACGTGAACACAAATAACATTAGCGCATTCATACATAAGAACCTACAGTATATTAATGCTCAGTGTGTTGGAAAAGTTTTACACAACAAAGTAGTTCTAAAAGACACCAGAACATTTACTCGTGAGAgaagacatactgtatacttgcagcatggaaaatattttatgtgGAATCTGCAGTGATGATTTTGACATATGATGGTAACATCTGCTGCCTGAGGAGAAGTAGCAAGACATGGCAGAGGCACAAGAAAACTAAATTAGTGACTGATTTGATTAGCTACAGTGATTAGTACTAGTTATTCTGACATATTTAAGTAATACAAGTTACAAGTAGGTATAGAAGAGGTTTATGCACAAAAAGAAGTTGATTTCTTTGCATATTAAGTCACATATATGTGGATGAAATGACAAattctttacatgtttatttcctTAAAATGTATGCCTAACTTAAACTGGTGACATGATAAACCTAGTTTGTCCACACTACTATTTGAAAcccttttattttatagtttgcAGGTGAAACTGATTCAAATGCTTTCTGAAACATCTGttaagaagtcttcagtgttttttcttaGAGGTATATCtgcaataaaatgtttcttctGTGGTAGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939714.2 True 1799 mRNA 0.40 2 4293496 4296129

Neighbor

gene id symbol gene type direction distance location
LOC117596921 NA coding downstream 4057 4284375 ~ 4289439 (-)
LOC113542293 NA coding downstream 19329 4259731 ~ 4274167 (-)
LOC113542265 NA coding downstream 44673 4229822 ~ 4248823 (-)
galntl6 galntl6,si:ch211-15e22.3,LOC107670789 coding downstream 203978 3877190 ~ 4089518 (-)
galnt7 galnt7 coding downstream 423732 3843479 ~ 3869764 (-)
sparcl1 LOC108262882 coding upstream 167567 4463696 ~ 4473298 (-)
fam193a fam193a,LOC103156485 coding upstream 215572 4511701 ~ 4540623 (-)
arhgap10 arhgap10,LOC107742542 coding upstream 489644 4785773 ~ 4878809 (-)
ednraa ednra coding upstream 625659 4921788 ~ 4944595 (-)
pou4f2 pou4f2 coding upstream 782231 5078360 ~ 5081554 (-)
G40522 NA non-coding downstream 452336 3792229 ~ 3841160 (-)
G40521 hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 non-coding downstream 452554 3838818 ~ 3840942 (-)
LOC113545372 NA non-coding downstream 455314 3819051 ~ 3838182 (-)
G40323 NA non-coding downstream 580663 3702221 ~ 3712833 (-)
G40316 NA non-coding downstream 619685 3673150 ~ 3673811 (-)
LOC117596430 NA non-coding upstream 192417 4488546 ~ 4496696 (-)
G40770 NA non-coding upstream 241930 4538059 ~ 4539526 (-)
G40936 NA non-coding upstream 369393 4665522 ~ 4665725 (-)
G40938 nr3c2 non-coding upstream 371077 4667206 ~ 4668993 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding upstream 443255 4739384 ~ 4739711 (-)
trnah-gug_3 NA other downstream 1258943 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1259559 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1260693 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1309293 2220147 ~ 2984203 (-)
G39720 NA other downstream 2119745 2173358 ~ 2173751 (-)
dclk2a LOC108263760,LOC108429594 other upstream 249010 4545139 ~ 4609450 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 597773 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 907577 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 1459888 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2865345 7161474 ~ 7204699 (-)

Expression


Co-expression Network