ednraa (ednra)


Basic Information

Item Value
gene id ednraa
gene name ednra
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4921788 ~ 4944595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939751.2
cacacacacatacacacaggaaaaGCTGGAGACAGTCTCCACAGCACCTCACACAGCAGCCTCAGTGCGGCTCGGCGGCCCAAACGGGATCCTCCTCTACTTTGATAGTTGCTTAATTACTCATGTGACGGCAGGCAGATGTCTGGGATGCTCCAGCTCAAAGTTCTCCTGAATAACTcgctgactgactgagtgacagGATCCGAGGGGAGGCAGACGTTTAAGGAGCGCCCTGGCATGTACGTAATTGGAATTGTCTTATCTGTGAATCAAACAACGTAACACATTCAGCAATGGTCCCTCTGACCCTACGCACATTCTTGCTAACAGCCATCATGGCCTCCAGTGGACTGACTCAAGCAAACATCACTGAGGAGGTCACTAGCACCCTCTTTCCCATCTCCACCATCAATCCCATGGGACCCATCAGCCAAGCGGGAAATCTCCCAGGCTCTCAGAGCCATTTAGGAAACAATCGCAACAAATCCTTTCCCTTCTGTAAAGAACAAACTTCCATTACAGATACCTTCAAGGTCATCAATACCTTCATCTCGTGTGTGGTATTTGTGGTGGGCTTGGTGGGAAATGCCACAGTGCTGAGGATTATCTACCAGCACAAGTGCATGAGAAATGGACCTAATGCTCTGATAGCAAGCCTGGCACTGGGGGACCTCATCTACATCACCATAGACATTCCCATCACCGTGTACAAGCTTCTGATGGGAAAATGGCCGCTGGATGACACCAATTTTGGAGTCTTCCTGTGTAAACTGGTTCCCTTCCTTCAAAAAGCATCGGTGGGCATCACAGTGCTGAACCTGTGTGCACTCAGCGTGGACAGGTACAGGGCTGTTGCCTCATGGAGTCGTGTTCAGGGAGTTGGCATTCCTTTACTCACCGCTGTTGAAATTGTGGTTATCTGGGTGCTGTCAGTCATTCTGGCCGTGCCTGAGGCTATCGGGTTTGACGTGGTGACCTTCACATACCGCAACATGACTATGCGTACCTGCATGCTCAATGTTTCTGAGTCCAAATTCATGCAGCAATATGTAATCGCAAAGGACTGGTGGCTGtttggattttatttctgtatgcCACTGGCCTGCACAGCAGTTTTTTACACCCTCATGACCTTCAAGATGCTCAGCCACAGGAACGGAGCTCTCCGGATTGCCCTAAGTGACCACCTCAAACAGAGGCGAGAGGTGGCCAAGGCAGTTTTCTGTCTGGTTTTGATCTTTGCGCTCTGCTGGATCCCCCTGCACCTCAGCAGAATCCTGAAGAAAATGGTGCCCAATCCTCTTGATGAAAACCGCTGTGACCTGTACAGCTTCCTCTTGGTCCTGGACTATCTTGCCATAAACCTGGCCACTGTCAACTCCTGCATCAATCCCATCGTCCTCTACTTTGTCAGCAAGAAGTTCAAGAATTGCTTTAAGTCTTGCTTGTGTTGTTGGCGCAGCTCAAAGAACCAAGTCACCAGCATGGGGCAGATGAACGGCACAAGTATCCAGGGCAAAACCCAAGACCCCAAAAACCTCCAGATTGATCGTGCCATCCGGAAGTACAGCTATTGAACAAATTGATGATCTATACTGcattacatttacttattttggcagatgtgtttttaaatctaaagTGACTTAGAATTGAGCTGAGCAGACGTAGAGTGACAGCTTGATGAtcctgggattcaaactcacaactgTCCGATACGTAGTCCAGAGCCCCTAACCACCGAGTCACCACTTCCCACTCATAGTGCCACCTCTGGTCTGGAAGACCAAGTGAATTTTGTCAGAACCAAGATATGCTGCCAGGATGGAAGACACCGCCCAGTAATCTATGATGTCTGAAGTTAGGCGTTCAGAGGAAATTAGTGATATTCTGTGCTGGACACAGAGTGACCGAAGCtgcttatactgtatactgtatatatttggcTGCACACTACACAATGGAGCTGATGTATGCAAAGTCCTTCTCCCAGAGCAAACATTCCCAGAATCTTCTGCGGGGATGTTTTGCCGTGAGAGACAGGGCAAGGGTGGAGGGGGGTCAGCAGGATGCAGCTGAACGTCAACTATAAATGAATCCAATCAGAGGCCCAAGAACACACAATAACTAGGCTACACAAATACATGCATAAGCTATGTGTAGACTTTCTCAAGGGACAGGAAACTGGAGGAAGGAAGAGTTGAGTAGTGTTTTACAAATCCTGTATATGGGTGTAAATATGGACTACACTAACAAAAAAACCTCCCTCTTCCTTCCCATTGCTGCTTATGAGTGCTTTCTAATTTCAGATCTATTCAGATCCAGGAAGACTTTACTTTCATTACTCGCATCCCTCACTTCAGACTgtctaaacattttaaatagatttttacgATAGGTTGCTTTGAAAGGGATAAGTCCGTTTTGTACAGTGCaatggaaaaacattttcacaatcacagattttctgcatttttggGCATGGATATCAAGACATCAATTTTTAGCATCCAGATCAGATTTTTTGCTGTTGGATTTTTGTGGACGCAAGCTCAACAGCACCGCCAGCGGtgataagaaaaatacacagaatggtatgaagaagcaagAAGAGagactggggctgatttctttctagcctagactgtagattcatgcagcctgtCACTGACAGTCATGTCTCTTGTGTGTTGGAGAGAGTGTATCAAAGCTACAAGATCATAGCAGCTTTGCCTGCCAACTAGCATTCAACTCAACACCTAGCATCCAACCTAGCTAGATAGTTAGCAAAAAATATGATGACCAATAATGGACATTAACAATTATATGAAATTTTTTAATAGACTTCTACAATGCCTGTATTTAGAGAATACAAATCTACAGAACACAGAGGCATTTTCATCCAAATTAGAAGGTGACTTGTTTCTTCGACTATTGAGTACCAAAAACTGTAGTGTGTATGTCAAACACATGTAGTCAAAATTCTGCCCTTCCAAGTGTCTGCTATTACTGTCATGTTAGATGGATGAGACCAAATGAGCATAGACTGCACACAGTGTTCTGGTTTCTGCTAGTAACCAGAAAGATCAAACTTTCACCcatctgtttatagttttataaaaaACTTCCGGATCTTTTGATGATcatccaagtgttttattccaaagCTAAACAAATACTCATGTTCTTTATGTCCTGCTGCTCcaccaaacactgcatttttccggaaatttgtttttttttttttttttacaagtagGGTCATGAACTCTAATATATTCTGATAAATTCAGAGAGACAActtgttttttccatttataccTTTCTTACATATGACATTGATCAAAATCCAGCCACTTTGCccatttttgtttgaatttgtcCCTATTTTTAAAAGCCCTGTTCTTTGTACATTGCTTACCAAATCCAAATTAGAAATATAGCTACAAGAAGCAATTAAGGGACCAAGCACTTTCTGGTCCCACCCCTTTGCAATGGAGGAAGACCAGATGCCACTGGAACTAGGTACCACTGGGAACATTAGTAAACTAGTGAAATACATCAATCCGTTGTTGAGATATGGCCTCACATTGTTTAGGAACAGATTTGTTCACATGATATGGACAAAGTGTTTTGAATATTAAACATCCAACAAGCAAGTTTTGTTTGGGGTGGCCTCATGATTCTGTGAACCAGTGATCCTCCAAAAGATGTATGCCAGTATTACTAATCTGGTAATCATACAAATTTGCTCTTCATTTACAActgcaattatttttttctaatcccAAAATGTACCAGTATTCTAAATTTGCTTTTCAAATTAATTCAGAGATCACCATTCATTATCAAAAGACCTTTTTATGGACAATGTGCTGAAATGCAGAAAATCAGAGATGGTGAAAATATTCACTTTTTCATTGCACTGTACACGAATTGAGGTATTTCTGTATAAAAGTGCTTCCATGTTTTAATACCGCTTCATATAATCCTATATAAGTGTTCAGAAATTCTCTGTGAACACATAACCGAAATGAGAAGGTGCTCCGACGCTTGATTAATTgttgaaggaacacacacagtgggtgATTGCTTCCTGAAGTCTTCCAGCTGGGTTAACTTGTCTGGTCTAGCCATTCAGTTAGAAATACAGAGGATAATGACTTTTGACCCTCTTCAGATTTTAGAATTAGCTCACAGAGGCTAGCCAACTTCAACAAACCCTTGGTAATaatgttgaaaaaaa

Function

symbol description
ednra Predicted to enable phosphatidylinositol phospholipase C activity. Involved in artery smooth muscle contraction. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Implicated in hypertension (multiple); lung disease; mandibulofacial dysostosis with alopecia; migraine; and obstructive sleep apnea. Biomarker of pulmonary hypertension.

NR:

description
PREDICTED: endothelin-1 receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048484 enteric nervous system development biological_process
GO:0051216 cartilage development biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0042310 vasoconstriction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004962 endothelin receptor activity molecular_function

KEGG:

id description
K04197 EDNRA; endothelin receptor type A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939751.2 True 4246 mRNA 0.43 8 4921788 4944595

Neighbor

gene id symbol gene type direction distance location
arhgap10 arhgap10,LOC107742542 coding downstream 42979 4785773 ~ 4878809 (-)
fam193a fam193a,LOC103156485 coding downstream 381165 4511701 ~ 4540623 (-)
sparcl1 LOC108262882 coding downstream 448490 4463696 ~ 4473298 (-)
LOC113542300 NA coding downstream 625659 4293496 ~ 4296129 (-)
LOC117596921 NA coding downstream 632349 4284375 ~ 4289439 (-)
pou4f2 pou4f2 coding upstream 133765 5078360 ~ 5081554 (-)
zgc:152968 LOC108262836 coding upstream 412946 5357541 ~ 5384816 (-)
mmaa mmaa,LOC102789515 coding upstream 446561 5391156 ~ 5401649 (-)
smad1 smad1,LOC103023608,LOC107734580 coding upstream 458899 5403494 ~ 5433155 (-)
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding upstream 500768 5445363 ~ 5457180 (-)
G40992 NA non-coding downstream 110363 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 147135 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 152568 4765079 ~ 4769220 (-)
G40966 NA non-coding downstream 177714 4743727 ~ 4744074 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding downstream 182077 4739384 ~ 4739711 (-)
LOC117596884 NA non-coding upstream 316596 5261191 ~ 5264789 (-)
G41114 NA non-coding upstream 333356 5277951 ~ 5281223 (-)
G41174 NA non-coding upstream 655389 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 931506 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 1350637 6295232 ~ 6302088 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 15549 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 312338 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 1887235 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1887851 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1888985 3032732 ~ 3032803 (-)
lsm6 lsm6 other upstream 259111 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 811422 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2216879 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 2494309 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 3190046 8134641 ~ 8216551 (-)

Expression


Co-expression Network