LOC113542482


Basic Information

Item Value
gene id LOC113542482
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5733447 ~ 5751032 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940056.2
CTCATAAAAGCACAAAGGAATTTTAACTACTACAGGGCATAGATCCACTAAAGTCATCTAGAGACTAAAGATTTAAGTGCTGATGATGATTTTCACAAATCTGCTCATCAAGACTTTGATCTATCCGAATCTTATAATGATCCTCATGGCAAGTCAGACTCTGGCCTTTATACCTTCGTGGTCAAAACCCAAGACGCATCAGGACATAACTCGTGATGCAATTTTACAGACAACGGCCGATATCTGCAGATCGCGAGCACTCCAGGAAGGAGGAAGTTTCATTCTGCCAGACCCACTGACAGTAGAGTCAGTAGCAGAAGCTTGTCACTCTTCTGATTCAGCCAAAGATTTTCAAAGCAGCATTAATAAGATAAATCATCACAATGCCTGGGTCGACTTTTGGCATTTTTTTAGCGCACGTTACCATTTTGACAACGAGGAGTTTTTGTCTGGACGGGATCTTATTACTAAAGGACTTGGTACTGTCAAAGACAGTGTCAATAAGCAGAGGTATCAAGCTGCCCGAGAGGCACTCGGTAAAATCCTACACACTTTGCAGGATTTCTACAGTCACAGTAACTGGATTGAACTGGGAAAGACAGAACCTTATGCCAACCTGATTAAACCAGACACCCCAATCAGCAACATAGCAGATTCCAAAACATGCGGGATTTGTAATGGTGACGTCTGCGTAGGAAACATCCTGGATGAGGTCATCGCACAGCAGCAACTAACATCAGGATACTTTGGCTTGTTCAAACCAAAAGGAAAATGCAGTCATGGAGGAACATTTGATCTATCAAGTTGGGGGCAAGGTGGCATAAATAAGGATTCTTCAGACTCCAGTCACGGTTATCTGCATAACCTGGCAGCATCAGTGGCCACTGCTGCTACCAGAGAACTACTGCAGGACATAAGAGCAGCAGTTGGAGATTCTGAGTTTCTTAGACTAATGGGACTCAGCCAGACTTCAGTGCTGTGTTTCGTTATCGACACCACTGGCAGCATGTCTGATGACATTGCCGAAGTCAGAAGAGTCACTTCATCCATCATTGACAATAAAACAGGCACAGCAGCTCAACCTTCAGAATACATCCTCGTGCCATTTAATGACCCTGATTATGGCCCACTTATAAGAACAACTGATCCTAATGTGTTTAAACAGCATCTCAGTGCACTTACAGCTACTGGTGGAGGAGATGCTCCTGAAATGTGTCTCTCAGCACTCCAGCTCGCCCTCACTGGATCTCCACCACAGACTGaggtttttgttttcactgatGCTGATGCAAAAGATGCATGGTTGAAAAGCACTGTGAAAGCACTGATTGAGATTACAAAGTCTAAGGTAAACTTCATGCTAACTAATGCCATTGGTTCTTGGCGTCGCAGAAGGAGTGCTGGGGCTATAGATGGCCAACAGCAATTCTCTACTCGGCTTTTCAATCCACTTAACCAGGTCTACCACGACCTGGCTCAGGCCTCTGGGGGCCAGGCTATTGAGGTCACCAAAGTAACCCTGGCCCAGGCTACTGACATTATTGCAGTTACCTCCAGATCTACACTGGTCACTCTTTTTCAGGCCATAAGAAACCCAGCCAAAGCTGAAAACTTCTCAGTTTTTGTGGATTCTTCTGTGCAAAACCTGACAATTTACATCACAGGCAACTCTCCAAATTACTTGTTGACTAGTCCATCAGGAGTCTCACAGAGCAGCACTGAACTAAATGGTGAGTTGGGGCTTATTCAGAGAGTTGGTAACTTCCATACAGTGCAACCAAACATCTCGGAGCAGACTGGACTGTGGCACTTCAGTATAAACTCAACACAGCCCTACACCATCAAAGTTGTTGGTCAAAGTGAGGTTAGCTTCCTCTCTGACTTTGTAGAACTTTCCCAGGGGCCTCATCCAAGCTATGCTGTATTAAACAGCAGGCCTACAACAAAAACCAATGTCACGGTGTTGGTGACCATGATTGGTGGCAGCAGTGTGAAGCTTACAGAGTTGTCTCTGGTCGAAGCCTCAAGTTCAAACTCTTTAAATGGGACACTAGAAGACGTAGGTAGTGGGCAGTACTTGGTGACCTTCAACACCATCCCAGCAGGAGAGTTTACTGTTCGTGTAGTTGGACAGATCGGTTCCTCTAGATCTTCAGATAACACCTTTCAGAGACAGTCACCAACTCAATTCCAGGCATCAACTGTGACCGTTACTACTGAACCTGTTGGAACAGCGGAACCAGGAAAACAACTCACTCTGCCTTTCACAGTGGCAACCAATGGCTCTGGAGGAAGCTTTAATATCAGAGTCAGCAATGATCGCAATTTTGACACTCTCTTTAACAAATCCTTAACTCTCGAGAGTGGGGGCAGTGCGAATGGTACAGTAACTCTGACTGTTCCTGAAAATACTTCCTCCGGAACTGACGTCACTGTGACGATCCAGGCTGACGCACCTGATGGAAGCGACTCCAACTACGCTGTGCTGCGTCTTGCTGTTATTGCTCCGAGAACAGATATTACTCCTCCCTTGTGTGAGGCAGTTAGCATAAATGCTAACTGTTCAGGCAACTGCAGCTTCTCCTCATGGTACCTCACTGCCAACGTGACTGATGGAAATGGAACAGGCATTCAGAGTGTGAGAGTCCTCCAGGGAAACGGCAACCTCAGCACCACCACTGTGCTCAGTGACACAGGCGTGAATGTCACTGTGGTCATCTACAACTCCTCTTGCTGTTCCTCAGACCTGGAGCTGGTTGCTGTGGATGCAGTGGGAAATGTTGCCACCTGCTTTAAATCTGTAAGAGCTACAGCACCAAGCACCAGCACTGCACCCCCTCTAACAGCAACTaacaccaccactaccaccaccaccacaactaCAACATCCACACCTCGTCCTACCAGCAAAAGCAGCACTACTGGTGTAGAATGTTGCTTGTTTCTGCCAGTCTTCCTTTGGCTGAATGTAGGAGTCTTCCTTTACCAATTCATGATCTGAATTCGAATCAGATTGACATATTAAGGCCTACATAATACCAGTAGTGCTTTTACCTAGAGTAAGTagcaaatgagcaaatgaaaTACACATTAatcataaactttatttttctatcTAATTCTAAATCAATGTGTAACAGGAAGACAATCTTACCTGCTTAATACGCTAAGTGTGTTTAACCTGAGTCTAAACTCTGAGGGTATTAATCTTAGATTTGGTGATTTAAGGGTCTGTTATTAATTCAATAGCATTAAATTATGTGCACAGATATCATTTATGCTAAGATTGTTAAAGAAACTGTTTTGCCTATAATCCACAATCTGTGGCATTAATCTTTAAAATCAGAATGATAATCTTAATTTACACTTTTATGCtgcaaatttaaaatacaaGTTAGTTCTTAGATTACTGGGTAATATCAGGCAAGGTAAGATGTTTCCTGAGTCCTTTGCTATTATAGTGTAGTATGCCTACATGCAATATAGGGTTAAAGGGTTTCAGTTTTAGTAaggcattaattaataaatgtaggtgattttactttttaattaaactggATTACGTGCTAGCACTAGAATCACAAAGGGatttactgatgatgatgatgatatgttATTTAACTGGTCCATgtagatttaaaatgtattgcatTATACATTCattgtgtttgatttttgttttttatttaaaatacatgataATTCCTGTCA
>XM_026940064.2
CGCAACTCCTACACTCTAATAGTGTTCCTCTCAAAGGATACTGGACGGCATTTCTCCTTACAACGCACTCAATTGTGGCAAGACTGCACTGTGCTGATGATGATTTTCACAAATCTGCTCATCAAGACTTTGATCTATCCGAATCTTATAATGATCCTCATGGCAAGTCAGACTCTGGCCTTTATACCTTCGTGGTCAAAACCCAAGACGCATCAGGACATAACTCGTGATGCAATTTTACAGACAACGGCCGATATCTGCAGATCGCGAGCACTCCAGGAAGGAGGAAGTTTCATTCTGCCAGACCCACTGACAGTAGAGTCAGTAGCAGAAGCTTGTCACTCTTCTGATTCAGCCAAAGATTTTCAAAGCAGCATTAATAAGATAAATCATCACAATGCCTGGGTCGACTTTTGGCATTTTTTTAGCGCACGTTACCATTTTGACAACGAGGAGTTTTTGTCTGGACGGGATCTTATTACTAAAGGACTTGGTACTGTCAAAGACAGTGTCAATAAGCAGAGGTATCAAGCTGCCCGAGAGGCACTCGGTAAAATCCTACACACTTTGCAGGATTTCTACAGTCACAGTAACTGGATTGAACTGGGAAAGACAGAACCTTATGCCAACCTGATTAAACCAGACACCCCAATCAGCAACATAGCAGATTCCAAAACATGCGGGATTTGTAATGGTGACGTCTGCGTAGGAAACATCCTGGATGAGGTCATCGCACAGCAGCAACTAACATCAGGATACTTTGGCTTGTTCAAACCAAAAGGAAAATGCAGTCATGGAGGAACATTTGATCTATCAAGTTGGGGGCAAGGTGGCATAAATAAGGATTCTTCAGACTCCAGTCACGGTTATCTGCATAACCTGGCAGCATCAGTGGCCACTGCTGCTACCAGAGAACTACTGCAGGACATAAGAGCAGCAGTTGGAGATTCTGAGTTTCTTAGACTAATGGGACTCAGCCAGACTTCAGTGCTGTGTTTCGTTATCGACACCACTGGCAGCATGTCTGATGACATTGCCGAAGTCAGAAGAGTCACTTCATCCATCATTGACAATAAAACAGGCACAGCAGCTCAACCTTCAGAATACATCCTCGTGCCATTTAATGACCCTGATTATGGCCCACTTATAAGAACAACTGATCCTAATGTGTTTAAACAGCATCTCAGTGCACTTACAGCTACTGGTGGAGGAGATGCTCCTGAAATGTGTCTCTCAGCACTCCAGCTCGCCCTCACTGGATCTCCACCACAGACTGaggtttttgttttcactgatGCTGATGCAAAAGATGCATGGTTGAAAAGCACTGTGAAAGCACTGATTGAGATTACAAAGTCTAAGGTAAACTTCATGCTAACTAATGCCATTGGTTCTTGGCGTCGCAGAAGGAGTGCTGGGGCTATAGATGGCCAACAGCAATTCTCTACTCGGCTTTTCAATCCACTTAACCAGGTCTACCACGACCTGGCTCAGGCCTCTGGGGGCCAGGCTATTGAGGTCACCAAAGTAACCCTGGCCCAGGCTACTGACATTATTGCAGTTACCTCCAGATCTACACTGGTCACTCTTTTTCAGGCCATAAGAAACCCAGCCAAAGCTGAAAACTTCTCAGTTTTTGTGGATTCTTCTGTGCAAAACCTGACAATTTACATCACAGGCAACTCTCCAAATTACTTGTTGACTAGTCCATCAGGAGTCTCACAGAGCAGCACTGAACTAAATGGTGAGTTGGGGCTTATTCAGAGAGTTGGTAACTTCCATACAGTGCAACCAAACATCTCGGAGCAGACTGGACTGTGGCACTTCAGTATAAACTCAACACAGCCCTACACCATCAAAGTTGTTGGTCAAAGTGAGGTTAGCTTCCTCTCTGACTTTGTAGAACTTTCCCAGGGGCCTCATCCAAGCTATGCTGTATTAAACAGCAGGCCTACAACAAAAACCAATGTCACGGTGTTGGTGACCATGATTGGTGGCAGCAGTGTGAAGCTTACAGAGTTGTCTCTGGTCGAAGCCTCAAGTTCAAACTCTTTAAATGGGACACTAGAAGACGTAGGTAGTGGGCAGTACTTGGTGACCTTCAACACCATCCCAGCAGGAGAGTTTACTGTTCGTGTAGTTGGACAGATCGGTTCCTCTAGATCTTCAGATAACACCTTTCAGAGACAGTCACCAACTCAATTCCAGGCATCAACTGTGACCGTTACTACTGAACCTGTTGGAACAGCGGAACCAGGAAAACAACTCACTCTGCCTTTCACAGTGGCAACCAATGGCTCTGGAGGAAGCTTTAATATCAGAGTCAGCAATGATCGCAATTTTGACACTCTCTTTAACAAATCCTTAACTCTCGAGAGTGGGGGCAGTGCGAATGGTACAGTAACTCTGACTGTTCCTGAAAATACTTCCTCCGGAACTGACGTCACTGTGACGATCCAGGCTGACGCACCTGATGGAAGCGACTCCAACTACGCTGTGCTGCGTCTTGCTGTTATTGCTCCGAGAACAGATATTACTCCTCCCTTGTGTGAGGCAGTTAGCATAAATGCTAACTGTTCAGGCAACTGCAGCTTCTCCTCATGGTACCTCACTGCCAACGTGACTGATGGAAATGGAACAGGCATTCAGAGTGTGAGAGTCCTCCAGGGAAACGGCAACCTCAGCACCACCACTGTGCTCAGTGACACAGGCGTGAATGTCACTGTGGTCATCTACAACTCCTCTTGCTGTTCCTCAGACCTGGAGCTGGTTGCTGTGGATGCAGTGGGAAATGTTGCCACCTGCTTTAAATCTGTAAGAGCTACAGCACCAAGCACCAGCACTGCACCCCCTCTAACAGCAACTaacaccaccactaccaccaccaccacaactaCAACATCCACACCTCGTCCTACCAGCAAAAGCAGCACTACTGGTGTAGAATGTTGCTTGTTTCTGCCAGTCTTCCTTTGGCTGAATGTAGGAGTCTTCCTTTACCAATTCATGATCTGAATTCGAATCAGATTGACATATTAAGGCCTACATAATACCAGTAGTGCTTTTACCTAGAGTAAGTagcaaatgagcaaatgaaaTACACATTAatcataaactttatttttctatcTAATTCTAAATCAATGTGTAACAGGAAGACAATCTTACCTGCTTAATACGCTAAGTGTGTTTAACCTGAGTCTAAACTCTGAGGGTATTAATCTTAGATTTGGTGATTTAAGGGTCTGTTATTAATTCAATAGCATTAAATTATGTGCACAGATATCATTTATGCTAAGATTGTTAAAGAAACTGTTTTGCCTATAATCCACAATCTGTGGCATTAATCTTTAAAATCAGAATGATAATCTTAATTTACACTTTTATGCtgcaaatttaaaatacaaGTTAGTTCTTAGATTACTGGGTAATATCAGGCAAGGTAAGATGTTTCCTGAGTCCTTTGCTATTATAGTGTAGTATGCCTACATGCAATATAGGGTTAAAGGGTTTCAGTTTTAGTAaggcattaattaataaatgtaggtgattttactttttaattaaactggATTACGTGCTAGCACTAGAATCACAAAGGGatttactgatgatgatgatgatatgttATTTAACTGGTCCATgtagatttaaaatgtattgcatTATACATTCattgtgtttgatttttgttttttatttaaaatacatgataATTCCTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940056.2 False 3711 mRNA 0.43 16 5736975 5751032
XM_026940064.2 True 3725 mRNA 0.43 16 5733447 5751032

Neighbor

gene id symbol gene type direction distance location
LOC113542496 LOC108263485 coding upstream 3785 5718697 ~ 5729662 (+)
LOC113542501 LOC108263484 coding upstream 17409 5697206 ~ 5716038 (+)
LOC113544150 NA coding upstream 43485 5677180 ~ 5689962 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding upstream 59319 5636867 ~ 5674128 (+)
si:dkey-27h10.2 NA coding upstream 106970 5599885 ~ 5626477 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding downstream 92534 5843566 ~ 5857230 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding downstream 514898 6265930 ~ 6295477 (+)
tbc1d9 tbc1d9,LOC107594295,LOC107598515 coding downstream 575828 6326860 ~ 6371028 (+)
ucp1 ucp1,LOC107703842 coding downstream 624537 6375569 ~ 6383460 (+)
gprin3 LOC108262861 coding downstream 647862 6398894 ~ 6405603 (+)
G41049 NA non-coding upstream 397882 5333384 ~ 5335565 (+)
G41032 NA non-coding upstream 411056 5270315 ~ 5322391 (+)
G41026 NA non-coding upstream 425329 5258551 ~ 5308118 (+)
G41031 NA non-coding upstream 463252 5264901 ~ 5270195 (+)
G41019 NA non-coding upstream 507019 5224948 ~ 5226428 (+)
G41232 NA non-coding downstream 67516 5818548 ~ 5819447 (+)
G41299 NA non-coding downstream 125116 5876148 ~ 5876422 (+)
LOC117596795 NA non-coding downstream 488335 6239367 ~ 6262431 (+)
G41331 NA non-coding downstream 509573 6260605 ~ 6263303 (+)
G41345 NA non-coding downstream 552865 6303897 ~ 6304105 (+)
znf827 znf827 other upstream 375587 5263582 ~ 5357860 (+)
G41047 NA other upstream 391697 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 961843 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 1898821 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 3642104 2025488 ~ 2091343 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 144399 5895431 ~ 6228685 (+)
G42075 NA other downstream 1452918 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1869513 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1898166 7649198 ~ 7671410 (+)
G42685 NA other downstream 2714715 8465747 ~ 8466312 (+)

Expression


Co-expression Network