parga (LOC108263327)


Basic Information

Item Value
gene id parga
gene name LOC108263327
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15355817 ~ 15386394 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940301.2
TGCCGTAAATGAGtgttgaaagactgaaagtaAAACAATTCTGCAAACGGCAGAGACGTCGCGACAGCGAGCCTTTTGGGTTGTTCTCTCTGCAGTCTGAGACATAACAGGAAAAAACTCGGGCTGTAGTTGGTGTTTCATTCATTACAATGTACTTATGTGCAAATTATATTGCGACCTGATAAGAATTTCTGCTCGGCTCTGTCTGAACTGGCAGTTTAGCGagtttagctaactagctgctTAGCATAACATGCAAAAGCTTGGCTGCTATCGCTGCTACAGTAAAGTAAACCTCTGAGGGCTGAAGAGGTTTTTAAAACGTCGTTAGCATTGCTCTTAGTGTATTAGTACAATATTATTTCTTCATTGTTTAAGTTAAGCTTGAGGCTATagagctaactagcaagctaactaaGCTACTTTGACTGCAGGTCGCTCGAGTTGCAAATACTAGCAGTTGCACTAGCAACAGTTTGATGAATTGCTGCAGAAAACATATATAGAGACACACTATAACTAATCGGCCATGAAAGAATGTACGCTTTACAGAATGAGAAAAGACTGAAACTGGAAGCTGACTGTCACTCTGAGAATTTCTCTGCCAGAAGTGTGGAAGAAGCCACTGGAACACACCGAGGTAGTTCACCCACCAATGTGCTGACACCAAATATGGATGAAACTGGGATGGAAGTAAACAGCAATATCACTGGTAACGTGAAGGTTGAAGACATAAGAAGCGATCGCCATAAAACATTTGAGTGCAACAAGAAGGATGCATGTCAGTTGAAAGACAACGACAAGCGTTTTGATGTGTCCCTAAGACAAAAAGATCCAGGTGACCAAAAAGTAGAAGAAACTCCAGGAAGCACTAACTCCAACCCAGAGGCGACGTATGGACAGAATTCACCAAATAGCAGTGTCAGTGATAATGCTGTCATCAAGACGAAGCCCGCCACTGAAGACGAGGCTCTTGTATCTAACTCAACGGATGCTAATCTTGGCAAGGTAGCAAGCATATCTACGGAAAAGGCAAAGATGGATCTCAGTTTATCTCAGAGCACAAGTGCTGATGTAGAGATGCTGAGCCCAGAGAGCCCAACCTGCAAATCCTTGCTATGTAACAGCTCAGAGGAAAGGCACAATCCCTGCACAAAGTCTCAGGCACCTTGTGCTCAATCCTCATCTCCTGTAGAGTCCACTAACATCACTGACCCTGGAGTTGGACCTGGATCTATAAGTGATCCTGACGTGACAGCCATGGAAACGGATAATTCCGACATGCCCGTTTCTGGTGGAAATTCGTTGCTGGCAAATGAAGACTCCAGTGGCAACCAGTCACAAGcaagTGACCCAGTGCTGGGGACTTTGCCACATGTGGACAGGAAGTGGTTGGGAACTGCTATAGAGGAGCTGAGGAGGATGCCAATGTGTGCTCAGGCCCTACCCCCGCTCAGGGCAACAGACAACCACAAAGTGCTCATCAGGaCTGACCTGCTCAAAGAAGGCGAGGTCCCTGTTCCGTACCCGAGCAAATTCCGAGATGCCTGGGATGATATGACTGTTAAGATGCCCTGCTCAGAAAAGAACCTGTTTCCTATGGAGAACGAGGATGGAGTGCAGAGTCGGTGGGAGCTCATTATTTCTGCCTTGGAAACTGAATGCAAAAGTTCACTGGATATTCGGgaAGCAATATTGACGTACAATGCAGCACACGCAAAGAGATGGGACTTCACAGCTCTAAATGTTCTCTGCACTGATGGCCTGGAGCACTCAGAAGCACAGTATCTGTTTAACGTTATGCTGCCAAAGATGGTAATATTGGCCCTGAGCGCTCCCAAAATTTGTACCCAGCCAATCCCCTTGCTTAAGCAGAACATGAATCAGTCCTTGACTCTGTCCCAGGAACAAATTGCCTGTCTGCTAGCCAACGCCTTCTTCTGTACGTTCCCCAGGCGCAACTCGCGCAAGTCTGAGTACTACAACTACCCTGAGATTAATTTCTACAGATTGTTTGAGGGATCCGCTCATCAGAAGATTGAAAAACTCAAAACTCTTCTTTGCTATTTCAGAAGAGTCACCACTGAAAAGCCCACTGGTCTCGTGACATTTACAAGACAAAGTCTGAGCAGTTTTCCTAAATGGGAAAGCTTGTCTACCCGGCTCACACGACTTCATATCACCTGTGAGGGGACCATTGAGGATCAGGGATACAGCATGCTACAGGTGGACTTTGCTAACAGGATGGTAGGAGGAGGGGTAACAGGACTAGGGTTGGTCCAGGAGGAGATTCGCTTTCTCATCAACCCAGAACTTATTGTCTCACGTCTCTTTACTGAGGCTTTGGACCACAATGAGTGCCTTATCATCACAGGCACTGAGCAGTACAGTAAGTACTCTGGCTATGCAGAAAGCTACTCATGGAAGGCCAACCACAAAGATGAGACACCAAGGGATGAGTGGCAGAGAAGGTGTACAGAGATTGTGGCAGTGGATGCGCTGAAGTACAGATACTACATGGAGCAATTCCACCCTGACAAAATCACAAGGGAGCTCAACAAGGCGTACTGTGGGTTTGTGCGGCACGGTGTCAACACCCAGAACCTCTCAGCCATTGCCACAGGAAACTGGGGATGTGGTGCATTCGGGGGAGACACCCGACTCAAAGCCTTGCTGCAGCTAATGGCAGCGGCAGAGGCTGGCAGAGATGTGGCCTATTTCACATTCGGTGATTCGGCGCTCATGAGGGACGTTCATGATATGCACGCGTTTCTGACAGACAAACATGTCACAGTGGgCAAACTGTATGGTCTCCTGAAGCTGTATTTTAATACGGTGGTGAAGAACAGTCACAGTCAGAGGCCTGATGTCAGTCTTTACGGCTTCATCTATGATCATATCAGCTCAGATCCTCCTCCTGAGCCCACTGCAGCCTCCTCTCCTCGTCCAGATGGACATTAATGCTGGCCTGTCATGAACTGACATGCATCCTTAGTGCTTCCTTCTTCTTTAGGAAAAGATCTTTTAGGTGATTTTCTGAGATGTGATGGACGTCTGTATACTTTTATTGAGCTCGGGAAATGCCTCAAGTCACAATACATTAAATATGTGACTTGAGAGTAGAGCAGCAGTACTCCTGGTTGCTGGTACTTGTGTTTCCCCATTTACCAGAGAGACATTTGTAACCAGATCAACTGCATGGTGTTGAATTATTCACTTGAAAATTAAGTGACAACGGCATATTAATCTTTACTGGTTGACTATTAGTAGGGCACTTACACAGATTCAATACAGTATGATAGAACCATATATAACATTGTATGCATGAAAACTCTTTAAAATACCCTGAGATGTTCACTATCACACTTGATTATGAAAAAGGATACAGTCAGAGTCATCTTTTTTGTTGGGTTCAGAAAGGTATTGTTATAATTGAGTTTTCAGTATATGTTAACTTTTACACATTAAAGGAAATTCTGTAACTGTTCAGCAAAAGAATTTGTACTTTCAGTCTAAAGGTAGTGTTGCTATATTGAATTGATCAGCTTGGCATGtactttttaacaatttattaagATTTCTATGCgcaagtgtaatttttttttttcttttcttgattCACAACTACTATTTAAAggtagtgattttttttctgttgtattCTATTTTAATATTGCTGATTAAATGGGTTAAACTGAACACCTTAA

Function

NR:

description
PREDICTED: lysosomal-trafficking regulator

GO: NA

KEGG:

id description
K07759 PARG; poly(ADP-ribose) glycohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940301.2 True 3707 mRNA 0.44 18 15355817 15386394

Neighbor

gene id symbol gene type direction distance location
myofl LOC108263542,LOC108442891 coding upstream 1404 15325232 ~ 15354413 (+)
unc5b unc5b,LOC108263852 coding upstream 33770 15259363 ~ 15322047 (+)
ly6pge si:ch73-28h20.1,LOC107673896,LOC107585320 coding upstream 195732 15157757 ~ 15160085 (+)
tacc2 LOC108263494 coding upstream 199074 15091830 ~ 15156743 (+)
nsmce4a nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317 coding upstream 264940 15085196 ~ 15090877 (+)
ogdhl ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740 coding downstream 2102 15388496 ~ 15413390 (+)
lrit1a LOC108262901,LOC108442250 coding downstream 61029 15447423 ~ 15450880 (+)
chst3a LOC108262760,LOC108442959 coding downstream 94133 15480527 ~ 15487523 (+)
pax2a pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 coding downstream 203724 15590118 ~ 15625846 (+)
cuedc2 cuedc2 coding downstream 287041 15673435 ~ 15677449 (+)
G46765 hps6 non-coding upstream 271507 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 340636 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 343828 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 729327 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 967506 14388029 ~ 14388311 (+)
G46833 NA non-coding downstream 32635 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 86807 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 324743 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 507187 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 646910 16033304 ~ 16035339 (+)
borcs7 borcs7 other upstream 381749 14972568 ~ 14974068 (+)
cgas NA other upstream 987717 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 1069275 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1854767 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2321467 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 407012 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 684320 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 738233 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 848120 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 898728 16285122 ~ 16308898 (+)

Expression


Co-expression Network