smad1 (smad1,LOC103023608,LOC107734580)


Basic Information

Item Value
gene id smad1
gene name smad1,LOC103023608,LOC107734580
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5403494 ~ 5433155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940360.2
CAGTGATACGCGGTGCTTGCGCGGAGGAGTGAGGCGGCCCGCGACACACTGACGCCAGGCGAAAGCAGATCCGGTCGGCTCGGGTGAACGCGTCGTGCTCAGGGAGGAGGCGCAGGAGgtcAGCTGGATATCCGGGTCCATTATTGGCACCGTTTCCTGCTCTGCTGgcgtttgtgtttgtgtgaggccTTACTGACGTTCAGTGTCTGCgaaaaaacaagaaaccacTCAGGACCCGGGTCGTTTGGTGTGCTTGTCCCCGCAGAATGAACGTCACGTCACTGTTTTCCTTCACCAGCCCGGCGGTGAAGCGCCTCCTGGGCTGGAAGCAGGGCGACGAGGAGGAGAAGTGGGCCGAGAAGGCTGTGGACGCGCTTGTCAagaagctgaagaagaagaagggtgCCATGGAGGAGCTGGAACGCGCACTCAGCTGCCCCGGCCAGCCCAGCAGCTGCGTGACCATCCCACGCTCGCTGGACGGACGACTGCAGGTGTCGCATCGTAAAGGGTTGCCTCATGTCATCTACTGCCGCGTGTGGCGCTGGCCTGACCTGCAGTCACACCACGAGCTCAAAGCACTCGAGTGCTGCCAGTTTCCCTTTGGATCCAAGCAGAAGGATGTGTGCATTAACCCGTACCACTACAAGAGGGTGGACAGTCCAGTTCTGCCACCGGTTCTGGTGCCTCGGAACAGCGAGTTCAACGCCAAGCTGTCCATGCTGCCACGCTTCCGCAACCCGCTGCACCAGACGGAGCCACACATgccccacaacattaaataccCGGAATCATTCACCCAGCAGCCGGGCAACAGCTTACCATTCGGCCCCAACTCGCCCTCCAACAGCTACCCCGGCTCACCCAACAGCGGCACGGCGAGCAACGCCACCTTCCCACACTCACCAAGCAGCTCTGAGCCCAGCAGCCCCTTCCAGATGCCAGAAACTCCACCACCTGCATATATGCCCCCTGAGGAGCCAATGACACAGGACTGTCCCCAGCCAATGGACACCAACCTGCTGGCCCCCAACCTGCCTGTAGATATCAACAACCGGACAGaTGTGCATTCAGTGGCCTATCAAGAACCCAAGCACTGGTGCTCCATCGTATACTACGAGCTGAATAACCGGGTTGGAGAAGCCTTCCTGGCATCCTCGACCAGCGTCCTGGTGGATGGCTTCACTGACCCGTCTAACAATCGCAACCGCTTCTGCCTGGGCCTGCTGTCCAACGTCAACCGCAACTCCACCATCGAGAACACACGCCGGCACATCGGCAAAGGTGTGCACTTGTACTACGTAGGAGGCGAGGTGTATGCTGAGTGCCTGAGTGACAGCAGCATCTTCGTCCAGAGCCGCAACTGCAACTACCACCACGGCTTCCACCCCACCACCGTGTGCAAGATCCCGAGCGGCTGCAGCCTCAAGATCTTCAACAACCAGGAGTTCGCCGAGCTGCTCGCCCAATCCGTCAACCACGGCTTCGAAGCCGTCTACGAGCTCACCAAGATGTGCACTATTCGCATGAGCTTTGTCAAGGGCTGGGGAGCTGAATACCATCGTCAGGACGTGACCAGCACCCCCTGCTGGATCGAGATCCACCTCCACGGACCGCTGCAGTGGCTGGACAAGGTTCTCACGCAGATGGGCTCTCCTCACAACCCCATCTCCTCCGTGTCCTAAAAACTCCAGCTCCTGGTTTCCGTGGAGACGTGCGGGCGGAGAGGGGAGGGAGTGGGGTTAATGATGGGGTTATGGGGCGGGGCAGTTGGATATGATTTGACTGGCAGCGGGCAAAGTCCTCAGTCAGTGAACATCTGGAAGATACTTGATAACTCTGTGTGACCAATCGCATTCATTGATGAGGCCATCGTACTCGTTGCAAGTATCCTCCTTCGGTCTTGTGACAGCAGGCGCTTTcctatttcacattttctcctttcttttctttttttgtttgcaaaatACGTCAGTATTCCATTGAAGGGGGGGATTTGTGTAGGTACAGTGATTATACAGTAGTGTGGTTATGCGACACGACTGACCTGCTTAGAGATaaaaattagtaaataattgTAGACATTATGCGTCAGATGAACTTTCTAGAAAGTGTCTGTGCCGTGTAGAACAGAATGtattacagtttttatgctcctttttgtttttgcaagaaaatgtagcaaaaatgagaaaaaaatctagtggggggaaaaacaggAGAGGTGGAAGTGAATAATCAAAAATGTTGTAAAGGGAAAACAATATGTGGATTAAACGGCATGATGTTAGTAGAGTAGGAGCGCATAGGCAGACTCGTGCTCTACTTTTATTGCATCCGACTGATTTCAGATGATTTTAAAGGTAGTGTAAAAAGTAGATGTGCTGATTATTAGAGGAAATGCTGTGcagtctgtttttattattattttcttttttttttttttttttttgccagtatAATTTTAACAGATAAGAGTAATACGTATGGGAGAAGAGGCAAGCACTGTTTACCTAATTCCTAATGGCAATGTGTCCCTTTATcctaaacatttatattaatgaacgAAAGACACTAAGTCCATTCTCgtttatgaaaatgaaatcaCGCTGAAGGACAGAGAACTCCAGCTTTCATTCATTGCTGTGTTGGTGTTTTggattgaattattttttaacccAGTGTTACTCGATATCACTCTCAGGGCCAGATGCAGTACGTCAGGAGGCGCACACGGTGTGCCTGAAATGAACCTTTCATTCTCTATGGCTGTAGCTTGTCACACAAATTGCTCTTGGAAACCATGTGCTCAGCGTGAAAGGCAGTTTAAAATTCACTGGAAACGGAGTTCAGTACATTACAATACAAGTTCATCAGCAATGAATGAAGTCAGTGATGAAactagataaataaattaaataaagattcaTGTGCTAGGAATTAATTTCAGAGTGGATGAGAATATATTCTGAATAAGATCACAGCATGATCTGTGcaattaaattgaaaaatggGTGCCAGAGAGTTGTACTTaatatgttagtgttagagaaaaaaagacatcttcTGTTTTAAAACCAGATCtacctgtctttttttcctcctcctgcaGTAAACCTTCACTCATTCTTCTGATGTCACTTCAAAATCCCTGAACTCTGAGTATAGCTAGCTGACTAGTAGCTTTCAACCcgaaacaggaaaaatgcacgattctgattggttaagcctgtttttctcaccatagcAAAAgttagccaataaaatgtgattaaacaaactatGTTTGATGTTTAAATATGGAACACTGACTTTGTTAACCTTTTATGAACATCAATACAGTGCAAAACAATGTTACTCGAAAAATCAAACCCAAAATCATCTGAATGctaattgtttttaatgaacTATGGACAGAATAAGACTAATGTGCAATTAAGATGTATTCCATTTTTCTTGTGGTCAATTGTGGCTTTTATAATTTCAAAACAATTGACATTATCACAGATATCCCGTTTAATTTGTTGTTAGATGTGAGGCATGTTGATGGACGTGTTCCTGACATAGGTGCCATGACCAGATATGcgtgacaaaaaaaatcccaaatggcAAGCagtattaaagattaaagattagaGAGTTGTCTGAAGATCACGAGTTCGAATCCCAACAATTCCACAGACATcaggagccaagagagcaaaagtggccatgctctctgggtgggcggggcatactctctctcacctgtcaatcatatCGACAGcagccaatcgtgggcgtctgtgaacacgtatgtggaagagggcagacagcgctttcctAAAAATAGGAGAAAATCCAAAAAATATTGTAGAGTTTCTCTAAATAGTTCTTTCACCAAGGTCCTAAAATGATCTCTTTTATAATTACACATTTCATCCTGTAAAACGATTTACGAGAAAGAATTAAAACAACGcacaaaacagcacacacatgtacacactaaTTTACACCTGGGCAAAGTCACACACATCTGGCTGTTACTAATTACCCAACATTAGTACATCAAACAGGATATgacatttcagttcaattccattgtatttatatagcgcttttaacaatggatgtTGTCACACAATACAGATAATCAgctgcacttcctgtttttcagcctgtttttacacttttaacgTCATTCTCCCTCGAACGCGTATGTATGATGGTGAGAGTGTGTTTGCGTTTCCATGTGCATTGTGTTTTTAGGCTCATACACCAGTTTCATACAGAACATGCAAGATCTTTAGTGTAGCTTAATTACccggaaaaaaagaaaaaggagctCACAGTTTAGTACATCTGGCCTTCGGTCAAACCACCCGTGTGAGGTAAATCAAGTGTGTTTGAATATTCAGTTCTTCAGGACGGACAGTTTTTGGTCTCAGCTCAGTGATGGAGGCGACAGACTTGTGATAGACTTGAAGACTTTAATCAGCAGCTCCATTTTCTTGGTCCGCAGATTTAATCTACAGGCCAGTTGGCTGATTAGTACTTCTGGATCTAATCTGTTTCACAATGCAGAGAaagggattgtgggtaaacGTTGAGCCGTATCACACCAatttgtcattgattattataacagcacttGGCTGTTGCACTTATTGTTTTCCTATAGAagccatagtgttttattcctcttataccacagcaggtaacatttttatgaagtaaagcttgacacatcatactttttattcatttatatttacgtCTAttgtctgtgagacaagttagttcctgggatcacttacattttagcagctatatacagttgttccttcaccagcctctcttttttctctctcttggagTTAATCTGTGATGTGGCGCTCTGGTATattaagattttcttttttaaagaacataaGAACTCGTAAACCAGAAGCAGCTCAGATCAAACATGATGAAAACTTGCTTGGTGGAAAATCTAGTCAGCTTGGATGAAGAAGAAATGTTTGTGTTAGAGATATAAGGCAACGTGAGACACATTTCAGGGTAACATCGACACATCCTCACATACAGCGTCTTTTTCACATCCAGCCGTTGTTTCTGTTTTAGTGAAACATCGTTGTTTTGTTCTTTCATCATTTCGTTTTGCTGATAACTATGCAAACGTCTAATGCTCACAGATACCAaaatgcagaagtataaatctTGCTGAACTTTCACTGCATATAAagtaaacatttctttatttcgGTAGACCCTTTATCCTGGGATTTGACCTCACAGCCTTCTGATCGCTAGCACACAGCATTAACCGCTGAGCTGCTTTACTGCCACTTCTCTCCTTCAGTACAAAAGCAAATCGCCGTGAATTCCCATGAACTCCTGCCATGAATTTGGAAATTTTAGTCCAAGCCAAAAGCAGTGTAGCATTATAACCCACTGAGACCTTAATGATTATCACTTCCTGTAAGGTAAGATCTAGAATTGAGATTTTAACCCTATGATACTTTAATACCCAATTATTGatcattaaagcagcagtgcgTCTTGCCTgagcatttttagcattttaaagtaaaataactGATTTTATTCGGTTACTTTCTAAATGGCactatttgatttttttgtaaaaagttTATATTTGTGATTacctttcattaattttttttttattcaagagAAATCCCATCCGCTCTTTTAAATTGAAacttttggttgtttttttgtatttttttaaagaaaatctatCGTCATTCTGTCGTATGTGCACTTTCATAAGTGGctttgtgtctttgtttttgtccttttttgtgctgttgttgctgtgtaGTGTTTTCCAGAAAGCAGTTTTAGCCACGAATATCAAAACTCTACTGGAagatacaataataaaattgtttcaA

Function

symbol description
smad1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; I-SMAD binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in BMP signaling pathway and embryonic pattern specification. Acts upstream of or within dorsal/ventral pattern formation; myeloid cell development; and negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of heteromeric SMAD protein complex. Is expressed in several structures, including artery; fin; immature eye; mesoderm; and nervous system. Orthologous to human SMAD1 (SMAD family member 1).

NR:

description
PREDICTED: mothers against decapentaplegic homolog 1

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04676 SMAD1; mothers against decapentaplegic homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940360.2 True 5900 mRNA 0.44 7 5403494 5433155

Neighbor

gene id symbol gene type direction distance location
mmaa mmaa,LOC102789515 coding downstream 1845 5391156 ~ 5401649 (-)
zgc:152968 LOC108262836 coding downstream 18678 5357541 ~ 5384816 (-)
pou4f2 pou4f2 coding downstream 321940 5078360 ~ 5081554 (-)
ednraa ednra coding downstream 458899 4921788 ~ 4944595 (-)
arhgap10 arhgap10,LOC107742542 coding downstream 524685 4785773 ~ 4878809 (-)
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding upstream 12208 5445363 ~ 5457180 (-)
LOC113541269 NA coding upstream 37802 5470957 ~ 5484612 (-)
hhip hhip,LOC107654904 coding upstream 65285 5498440 ~ 5532480 (-)
usp38 usp38 coding upstream 392255 5825410 ~ 5840770 (-)
il15 NA coding upstream 796489 6229644 ~ 6243139 (-)
G41114 NA non-coding downstream 122271 5277951 ~ 5281223 (-)
LOC117596884 NA non-coding downstream 138705 5261191 ~ 5264789 (-)
G40992 NA non-coding downstream 592069 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 628841 4774344 ~ 4774653 (-)
G40979 NA non-coding downstream 634274 4765079 ~ 4769220 (-)
G41174 NA non-coding upstream 166829 5599984 ~ 5601143 (-)
G41300 NA non-coding upstream 442946 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 862077 6295232 ~ 6302088 (-)
G41563 NA non-coding upstream 938500 6371655 ~ 6371866 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 1102549 6535704 ~ 6538550 (-)
lsm6 lsm6 other downstream 175527 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 497255 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 794044 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 2368941 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 2369557 3033866 ~ 3033937 (-)
gab1 gab1 other upstream 322862 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 1728319 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 2005749 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 2701486 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 3036831 8469986 ~ 8470057 (-)

Expression


Co-expression Network