prom2 (LOC108263179)


Basic Information

Item Value
gene id prom2
gene name LOC108263179
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15059462 ~ 15078057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940574.2
AGTCTCATTTCTCTGCTTAGCCTGAAACAGCAAGTGGACTTGTATTTACATTACGATAAAGAACGTTTTAGTAGAAGGTTCAGGAAGCCCTCCCCTTCCTTCACTCCCTTTTCTGCTCTCACTCACCCTCTAATTGCATTCGTGAACTCCAGATCACAGATCGGCTTTCTTCGGGACATACTCTGTTTATTAGCTAGGCAAGTCAAGCTCTTTGGTCCTGCTCAAGACACAGCAAGACCCTCTTTCACGAGGGTAAAGGTGCAGCGTGAAGGTGTAAAAGATTAGTAACCATGAGTTAAAATACGGTTGCTTGTTTACTGCTTGCCAAAATGGGGACCAGTATGAGGCTAATTCTTGGGGTGGTGAACTTGCTGCTCTTTCTTTGGCCGTGTGTGAGCACACAGCACTGTCCAGCCGGAATAATTCCTCCAGAACTGGACGGTCCTGAGTCCATCCCTAAATCTCCAGTTCAAGATGGTTATATGTCGCCTATCGTCCACTCCTTTTTGAGCTCTGTCCAACCCAACCCTTTCCCTAAAGATCTATTCATTAAAATTCTGAAATCTCAGAGCACCGATAAAGCAACAATAAATGAGGTTTTGCGCTATGAGGTGGGATTTCTGGTGTGCGTGGCCATTGGGATTCTGTACATCCTCCTCATGCCCTTAATTGGCCTGTGCTTCGCATGCTGCCGTTGCTGTGGGAATTGTGGAGGCCGCATGTACCAAGAGCAGACCAAAAGCATCAAATGCAGAAGATGGAGTTTTTACTGGGCCACTTTTCTAATCACCTTCCTTATATTGGCAGGGAATATTTGTATGTTCTTAAGCAATACCTACACCCACGAGAGTGTGAGCTCTGCACCACGTGAATTCAACAATACCTTAAAAAATCTACAAAGCTACATCACCACTATTCCCAAGCAAATAGACCAAGTGGTGAATGAGAGCTTTGTTGCTGTGGATAATGTCACATATAACATTAATGAAATTGGCCCTTTGCTTGGCAGAGAGATCCAGAAAGAAATAGAAGGCTTTATTATCCCGGCCCTGGACTCTGCTGCAGTGATGGTACAAGTTGTTCAAAACACCAGTTTGTTGCTGTACACATTGAATGCAACACAGAAGGAGCTGGATTTGCTACAGTCAAACCTGACTGGAGTGAAAGCTCGCATGAACAAGACACTGCACAGCCCAGACTGCGTGCAGTGTGTCTCCTTGCACTCTGAACTGGACAAGCTGTCCCTGGACACAAGCATTAATATATCCAGCCTTAATAAACTCCAGGCAGCTGTGGACCAGGCTGAGAAGACTGATCTGAATATGCAGATACAGAAAGGGAAAGCCTTCTTTGAAAGCATTCCTGACAGGGTGACTACTGCAACCAGAGACAGCGTGCAGAAGGTTCAACAGGACCTTCAAACCATAAAGAGCCAGGTCTCACAGGTAACCAGAGATATTCCACTTGACCAATTGACTGAATTCTCCAACACACTGAGTACTATACAACAAGATACCAAGCTGTACACACCCACGATAGACCAGGCAGAGAAACTCAGGTGGATTATTGCAGTGATCCTGTGCTGTCTCATTCTTCTGGTGGTGGTGTGCAATCTGCTGGGATTGATGCTTGGCCCAGCAGGACTGGTACCTAAAGATGATCCAACTGATCGCTCTAGCACAGCAAACTGTGGTGGATTGTTCCTCATGGCGGGTGTAGGCTTCAGCTTTTTATTCTCTTGGATATTCATGATAGTCGTCTTGATACTTTTCTTGATAGGGGGTAACACGTATACCCTCATCTGTGTGCCATGGAAGACCCAGCAACTCTTTCAGCTCATTGACACTCCAGATGTGATTCCAGGATTCCAGCTGTCTCAAAGCCTAGGACTAAAGATTAACCTCACTATCACTGATGTGTATaaTGACTGCCAGATGAACAAGTCTCTATGGAACACCTTACACCTGGAGGACATTATTAATCTCAATAACTATCTTAATGTCTCCAAATACACAGGACAGGTGCAGGAGGCGCTTGAGAACAGCAATATCACTTTACCCAGCATTGTTCTGCTCAATTCTGAGACAAAGAAGCAACTGATCAGCTTCTCTGCTACAGCCAGCAGCGTCAACATCAGTAGCTTAATGCAGAAGgttactACTCCATCAGGAACAAATCTTAGTTACATTGCAGACAGATTGGATGCTTTGGTTAATATCCAgACCAATGCTAGTATAAAAGCTGAACTACAGAATGAGGCAAAAGACCTGAGATTCATCCAGACTCAGCTTAATTCCACCATCAAGCATCAGTTGATGGAGTTAGACTCTGAAATTGAGCGTTTCAGTGACATAATGTCACACATCAATGGTACTGTGGAGAATGTTCTGGAGAAAGTCAGTTCTGCTCAGGATGTTTTgaacaacaacacaacagaaACAGTGAAATCAAAATTGACTGAATTTGTAGACTGTCAGATTGGAGTCTTTACAACGCTTGCTGAATGGGCCAACCAAACAattacTGAGCAGGTGGGACGCTGTGGGCCGGTTGCTGTTAGTGTCAACACTGTAGAAAATCTATTTTGCTCACAGCTTGTGGACTCTCTGAATGCCTTTTGGTTTAGTTTGGGCTGGTGCATTGTCTTCCTCATTCCTAGCATTATTTTCTCTGTTAAACTGGCCAAGTTTTACCGCCGGATGAAGTACAAGGATGAGTTTATGGATAACATAATGATGAGCCCGATCCCACGAGTCAATCTAAAACCATACtgaaaggaggaagaaaaattacagtactgtatattcattgTTGCCATAATAAAGGACCTTGGCACAGCCTGAGGAGACATACACTGGATGCTGGGTCTAAAAACTCAGAGCCTGGAATTCTTCTGCTTTTGGATAAAGGAGGAAAATTTAATGTGATTTGGAATGTGCACATTCCAGACATGCTTTAGAGATTTTACAATAAGTGAGATCTCCTGAGTCATGACTATGAATGCGTGCGATCTATCAGTCAGAGGCTTTTGAGTTATTTTGGATCACTGCTTtgtatttgcactttttttcaCAGTGATTATGTACAATATGTGTCTGGAATGCAtattgttgattttattttttattttttcataattaatgATAATTGGTAACGAGAATGAAAGCACTGCTTCATGCATTGCTGTAATTTCAATTGTTTATTTCAGATGTTCTGTCTTTAATAAACCATTACTACTGACATTGTAA
>XM_026940583.2
GCCGTTGCTGTGGGAATTGTGGAGGCCGCATGTACCAAGAGCAGACCAAAAGCATCAAATGCAGAAGATGGAGTTTTTACTGGGCCACTTTTCTAATCACCTTCCTTATATTGCAGGGAATATTTGTATGTTCTTAAGCAATACCTACACCCACGAGAGTGTGAGCTCTGCACCACGTGAATTCAACAATACCTTAAAAAATCTACAAAGCTACATCACCACTATTCCCAAGCAAATAGACCAAGTGGTGAATGAGAGCTTTGTTGCTGTGGATAATGTCACATATAACATTAATGAAATTGGCCCTTTGCTTGGCAGAGAGATCCAGAAAGAAATAGAAGGCTTTATTATCCCGGCCCTGGACTCTGCTGCAGTGATGGTACAAGTTGTTCAAAACACCAGTTTGTTGCTGTACACATTGAATGCAACACAGAAGGAGCTGGATTTGCTACAGTCAAACCTGACTGGAGTGAAAGCTCGCATGAACAAGACACTGCACAGCCCAGACTGCGTGCAGTGTGTCTCCTTGCACTCTGAACTGGACAAGCTGTCCCTGGACACAAGCATTAATATATCCAGCCTTAATAAACTCCAGGCAGCTGTGGACCAGGCTGAGAAGACTGATCTGAATATGCAGATACAGAAAGGGAAAGCCTTCTTTGAAAGCATTCCTGACAGGGTGACTACTGCAACCAGAGACAGCGTGCAGAAGGTTCAACAGGACCTTCAAACCATAAAGAGCCAGGTCTCACAGGTAACCAGAGATATTCCACTTGACCAATTGACTGAATTCTCCAACACACTGAGTACTATACAACAAGATACCAAGCTGTACACACCCACGATAGACCAGGCAGAGAAACTCAGGTGGATTATTGCAGTGATCCTGTGCTGTCTCATTCTTCTGGTGGTGGTGTGCAATCTGCTGGGATTGATGCTTGGCCCAGCAGGACTGGTACCTAAAGATGATCCAACTGATCGCTCTAGCACAGCAAACTGTGGTGGATTGTTCCTCATGGCGGGTGTAGGCTTCAGCTTTTTATTCTCTTGGATATTCATGATAGTCGTCTTGATACTTTTCTTGATAGGGGGTAACACGTATACCCTCATCTGTGTGCCATGGAAGACCCAGCAACTCTTTCAGCTCATTGACACTCCAGATGTGATTCCAGGATTCCAGCTGTCTCAAAGCCTAGGACTAAAGATTAACCTCACTATCACTGATGTGTATaaTGACTGCCAGATGAACAAGTCTCTATGGAACACCTTACACCTGGAGGACATTATTAATCTCAATAACTATCTTAATGTCTCCAAATACACAGGACAGGTGCAGGAGGCGCTTGAGAACAGCAATATCACTTTACCCAGCATTGTTCTGCTCAATTCTGAGACAAAGAAGCAACTGATCAGCTTCTCTGCTACAGCCAGCAGCGTCAACATCAGTAGCTTAATGCAGAAGgttactACTCCATCAGGAACAAATCTTAGTTACATTGCAGACAGATTGGATGCTTTGGTTAATATCCAgACCAATGCTAGTATAAAAGCTGAACTACAGAATGAGGCAAAAGACCTGAGATTCATCCAGACTCAGCTTAATTCCACCATCAAGCATCAGTTGATGGAGTTAGACTCTGAAATTGAGCGTTTCAGTGACATAATGTCACACATCAATGGTACTGTGGAGAATGTTCTGGAGAAAGTCAGTTCTGCTCAGGATGTTTTgaacaacaacacaacagaaACAGTGAAATCAAAATTGACTGAATTTGTAGACTGTCAGATTGGAGTCTTTACAACGCTTGCTGAATGGGCCAACCAAACAattacTGAGCAGGTGGGACGCTGTGGGCCGGTTGCTGTTAGTGTCAACACTGTAGAAAATCTATTTTGCTCACAGCTTGTGGACTCTCTGAATGCCTTTTGGTTTAGTTTGGGCTGGTGCATTGTCTTCCTCATTCCTAGCATTATTTTCTCTGTTAAACTGGCCAAGTTTTACCGCCGGATGAAGTACAAGGATGAGTTTATGGATAACATAATGATGAGCCCGATCCCACGAGTCAATCTAAAACCATACtgaaaggaggaagaaaaattacagtactgtatattcattgTTGCCATAATAAAGGACCTTGGCACAGCCTGAGGAGACATACACTGGATGCTGGGTCTAAAAACTCAGAGCCTGGAATTCTTCTGCTTTTGGATAAAGGAGGAAAATTTAATGTGATTTGGAATGTGCACATTCCAGACATGCTTTAGAGATTTTACAATAAGTGAGATCTCCTGAGTCATGACTATGAATGCGTGCGATCTATCAGTCAGAGGCTTTTGAGTTATTTTGGATCACTGCTTtgtatttgcactttttttcaCAGTGATTATGTACAATATGTGTCTGGAATGCAtattgttgattttattttttattttttcataattaatgATAATTGGTAACGAGAATGAAAGCACTGCTTCATGCATTGCTGTAATTTCAATTGTTTATTTCAGATGTTCTGTCTTTAATAAACCATTACTACTGACATTGTAA

Function

NR:

description
PREDICTED: prominin-1-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940574.2 True 3248 mRNA 0.43 25 15059462 15078057
XM_026940583.2 False 2557 mRNA 0.42 21 15065121 15078057

Neighbor

gene id symbol gene type direction distance location
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding upstream 683 15034063 ~ 15058779 (+)
polr1c polr1c,rpac1 coding upstream 29647 15024924 ~ 15029815 (+)
cnnm2a cnnm2,cnnm2a,LOC107585325,LOC107716327,LOC107673921,LOC107588659 coding upstream 65392 14977725 ~ 14994070 (+)
wbp1la wbp1l coding upstream 98269 14946833 ~ 14961193 (+)
fbxw4 fbxw4,LOC107707737,LOC107716323 coding upstream 123258 14910899 ~ 14936204 (+)
nsmce4a nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317 coding downstream 7139 15085196 ~ 15090877 (+)
tacc2 LOC108263494 coding downstream 13773 15091830 ~ 15156743 (+)
ly6pge si:ch73-28h20.1,LOC107673896,LOC107585320 coding downstream 79700 15157757 ~ 15160085 (+)
unc5b unc5b,LOC108263852 coding downstream 181306 15259363 ~ 15322047 (+)
myofl LOC108263542,LOC108442891 coding downstream 247175 15325232 ~ 15354413 (+)
G46713 NA non-coding upstream 44281 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 47473 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 432972 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 671151 14388029 ~ 14388311 (+)
G46217 NA non-coding upstream 771175 14286650 ~ 14288287 (+)
G46765 hps6 non-coding downstream 1756 15079813 ~ 15084310 (+)
G46833 NA non-coding downstream 340972 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 395144 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 633080 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 815524 15893581 ~ 15896079 (+)
borcs7 borcs7 other upstream 85394 14972568 ~ 14974068 (+)
cgas NA other upstream 691362 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 772920 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1558412 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2025112 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 715349 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 992657 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1046570 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1156457 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 1207065 16285122 ~ 16308898 (+)

Expression


Co-expression Network