trmt61a (trmt61a,LOC107582491,LOC107678528,LOC107698149,LOC107589545)


Basic Information

Item Value
gene id trmt61a
gene name trmt61a,LOC107582491,LOC107678528,LOC107698149,LOC107589545
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17971726 ~ 17982745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940734.2
GAAGGTCAAAGAAGCTGTGTCGGCTTTCATTACGTCATCTGTCTGCGACACGTTAGCGGCAAGTCAGTATTGCTTTTCTAACACGTGTGTAGACCGGTTTTGATAGGCAACATAAACCTCAAACTGTTTTCAATAAAGCTAATCACAACTGTCCCATGAGTTTTGTGGAGTACTCAGAGTTCATTCAGGAAGGAGATGTGGTCATCATCTTTCTTGGGCATGATTCCATGATGCCCATCAAAGTGGAGTCTGGTGCTCAAACACAGACCCGCTATGGAGCCATTCGCCACTCCACTGACTTAATCGGTCAGCGGTTTGGTTCAAAAGTAACATGCAGTAAGGGTGGATGGGTGTATGTACTGCATCCCACTCCAGAGCTATGGACTGTGAATCTGCCCCACCGAACCCAGATCCTTTACACAACGGACATCGCCAACATCACCCTGATGCTGGACCTCAAACCAGGCTCCGTTGTCTGTGAATCAGGCACTGGCAGCGGCTCACTGTCCCACGCCATTCTCCGCACCATCGCACCCAGTGGCCACCTGCACACAGTCGAGTTCCATGCCCAGCGGGCAGAAAAGGCTGCACAAGAGTTCAGAGATCACAAGGTGGGCCATCTAGTGACTGTCCGAAACCAGGATGTGTGTAAAGATGGCTTTGGTGTTGTGGGTGTAGCCGATGCAGTATTTCTGGACATCCCCTCACCATGGGAGGCCATCATACATGCCAAGAAAGTATTCAAACGCAGGGggGGTCGTTTGTGCTCCTTCTCTCCATGTATTGAGCAGGTCCAGAggacatgtgaaactctgctgGATCATGGCTTTGAGGAGATCTGTACTCTGGAGGTTCTGCAGAGGGTACACGACGTCCGATCTGTCACTCTGCCCTTACCGGACTTCGGCCCGGAGGAGGGTGGAACAGATAGTACCAAGATAACTTCTGGCCCTGCTCCAGAGGAAGTTCCATCTGCAGCAAACCCCAGCTACTCTTCAGTAACCTGCAGGACTGCCACTCCACCTAGAGAGATGGCTGGACACACGGGTTACCTCACATTCGCTACCAAACCACGGGACTAGAATACTATGGGAATGGAGTGAGATGGATCGAGTTACTAATTGAAGCATGAGTGTAGACTTTAACTCTGCGCTCATTTTTTCTTACAGTCTTTCATGGTGTATATGAACATCTCTTTATATTAAGATACAGAGATGGAATTAATCAGAGATGGGAGACCACAGATGTTTTGCAAATAGGCTagatgattttaaaatacttgTTTATTACTGTTCATTGTTCTTTGTGTAAGAACAATCTTTAATTTCATCCAAAGTATGACAatgaattttaataatgttatttttttttttgtttttttgttacaataaatttaaaatgagagGAAATATA
>XM_034303031.1
GATACTGAAGTGAATAAATGATGCTCTAAATGTTTTAGTTAGCTGTGGCTGCATGCTGTGGAAACATTATTTGTGCAGACTCCTGCATGTTTTGCACCAGGCTGCGGCTGTCATGATCTAATCACAACTGTCCCATGAGTTTTGTGGAGTACTCAGAGTTCATTCAGGAAGGAGATGTGGTCATCATCTTTCTTGGGCATGATTCCATGATGCCCATCAAAGTGGAGTCTGGTGCTCAAACACAGACCCGCTATGGAGCCATTCGCCACTCCACTGACTTAATCGGTCAGCGGTTTGGTTCAAAAGTAACATGCAGTAAGGGTGGATGGGTGTATGTACTGCATCCCACTCCAGAGCTATGGACTGTGAATCTGCCCCACCGAACCCAGATCCTTTACACAACGGACATCGCCAACATCACCCTGATGCTGGACCTCAAACCAGGCTCCGTTGTCTGTGAATCAGGCACTGGCAGCGGCTCACTGTCCCACGCCATTCTCCGCACCATCGCACCCAGTGGCCACCTGCACACAGTCGAGTTCCATGCCCAGCGGGCAGAAAAGGCTGCACAAGAGTTCAGAGATCACAAGGTGGGCCATCTAGTGACTGTCCGAAACCAGGATGTGTGTAAAGATGGCTTTGGTGTTGTGGGTGTAGCCGATGCAGTATTTCTGGACATCCCCTCACCATGGGAGGCCATCATACATGCCAAGAAAGTATTCAAACGCAGGGggGGTCGTTTGTGCTCCTTCTCTCCATGTATTGAGCAGGTCCAGAggacatgtgaaactctgctgGATCATGGCTTTGAGGAGATCTGTACTCTGGAGGTTCTGCAGAGGGTACACGACGTCCGATCTGTCACTCTGCCCTTACCGGACTTCGGCCCGGAGGAGGGTGGAACAGATAGTACCAAGATAACTTCTGGCCCTGCTCCAGAGGAAGTTCCATCTGCAGCAAACCCCAGCTACTCTTCAGTAACCTGCAGGACTGCCACTCCACCTAGAGAGATGGCTGGACACACGGGTTACCTCACATTCGCTACCAAACCACGGGACTAGAATACTATGGGAATGGAGTGAGATGGATCGAGTTACTAATTGAAGCATGAGTGTAGACTTTAACTCTGCGCTCATTTTTTCTTACAGTCTTTCATGGTGTATATGAACATCTCTTTATATTAAGATACAGAGATGGAATTAATCAGAGATGGGAGACCACAGATGTTTTGCAAATAGGCTagatgattttaaaatacttgTTTATTACTGTTCATTGTTCTTTGTGTAAGAACAATCTTTAATTTCATCCAAAGTATGACAatgaattttaataatgttatttttttttttgtttttttgttacaataaatttaaaatgagagGAAATATA

Function

symbol description
trmt61a Predicted to enable methyltransferase activity. Predicted to contribute to tRNA (adenine-N1-)-methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; lens placode; midbrain; optic vesicle; and solid lens vesicle. Orthologous to human TRMT61A (tRNA methyltransferase 61A).

NR:

description
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A-like

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0031515 tRNA (m1A) methyltransferase complex cellular_component
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity molecular_function

KEGG:

id description
K07442 TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940734.2 True 1413 mRNA 0.46 4 17971726 17982745
XM_034303031.1 False 1392 mRNA 0.46 4 17971984 17982745

Neighbor

gene id symbol gene type direction distance location
mark3a mark3,mark3a coding upstream 6420 17943331 ~ 17965306 (+)
LOC113541463 eif5,LOC107708426,LOC107721218,LOC107582488,LOC107589547 coding upstream 31890 17932252 ~ 17939836 (+)
tnfaip2b LOC108263219 coding upstream 45438 17921135 ~ 17926288 (+)
LOC113544778 NA coding upstream 52389 17903229 ~ 17919337 (+)
LOC117595658 LOC108262911 coding upstream 86430 17867571 ~ 17885296 (+)
LOC113543388 apopt1 coding downstream 29070 18011815 ~ 18015780 (+)
klc1a klc1 coding downstream 35650 18018395 ~ 18046867 (+)
fignl1 fignl1 coding downstream 73381 18056126 ~ 18059166 (+)
mocos mocos coding downstream 157944 18140689 ~ 18149740 (+)
anxa11a anxa11,LOC108263209,LOC106613295 coding downstream 175718 18158463 ~ 18173187 (+)
G48305 NA non-coding upstream 30404 17902052 ~ 17941322 (+)
G48302 NA non-coding upstream 74270 17896322 ~ 17897456 (+)
G48209 gbf1 non-coding upstream 202790 17726419 ~ 17768936 (+)
G48133 NA non-coding upstream 368572 17601874 ~ 17603154 (+)
G48095 NA non-coding upstream 503578 17467948 ~ 17468148 (+)
G48323 NA non-coding downstream 3536 17986281 ~ 17986571 (+)
LOC113541886 NA non-coding downstream 98872 18081617 ~ 18084799 (+)
G48478 NA non-coding downstream 191555 18174300 ~ 18174499 (+)
G48494 NA non-coding downstream 239323 18222068 ~ 18222547 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding downstream 477928 18460673 ~ 18462196 (+)
LOC113541016 ankrd2 other upstream 994697 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 1504376 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 1662828 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 1734184 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 1837724 16124627 ~ 16134002 (+)
dlg5a dlg5 other downstream 193996 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 919693 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 1044223 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 1231462 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 1273319 19256064 ~ 19262088 (+)

Expression


Co-expression Network