LOC113543098 (tapbp)


Basic Information

Item Value
gene id LOC113543098
gene name tapbp
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3296533 ~ 3306323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941131.2
GAGGGAAAGTGAAAGTGATGTGTTATGTGCGCTGGGAGTTTTAGGGGAAGTCTGTTATTGTGTGTTGTTCATTTGGAGACAGCAAAAGCAGCAGAAAGTCGCTGATTTAACAGCTAAAAGGAGCCATGAAGGATCTTTCCACCATCTATAAACTGTCTGTGATTGCGTTTGCTCTGCTGGGTGATGTGTGTAGTTCAAGATGCTCGGTGCTGGAGTGCTGGTTTGTTCAGGAAAGGCCGGGTGGTGGAGGTTTCTCAGCGGGAATGAGCCAGGAGAAATCTGCGCTGTACATCAGAACCGACCCCGACAGCGAGAAGATTGAGCATAAACCTCCATCAGACATCACTCCCTCCAGAATTTACTACGTGTCTGATCCTGCGTCCACCTTCTGCAGCTCTGCCCTCCATCCACCAGAGGGCTCTGTGAACAAACCGCAGTGTGAGATAAACCCTTTCACCCCTCAAGCCTCCATGGTCAAATGGGCCGCCCCTCTCACCTCCTCCGCTCAAAGCCCCATCTACCTGAGCGCCGACTGGTTTTCTGTATCAGCACAAGGTCTTAACGGAGAACTGACGCTGGCGAATGTGATGCGGGCGCCGACTGGCTCTAAAGAGCCGAGCGTAATCCTCAGCGTCTCCAGTAAAACCTCCACCGTCCACTCCAGACTCGGGGATCCGGTTGTCCTGGACTGTGGCTTCTGGGTCGACCCGTCTTCACCGCTGCATGGTTCTGGCTTCGCTGTGGAGTGGCGCTACCAGTTCCGGGGTGAAGGCAGGCTGGTCGTGGCCTACGACGGGAAGAACGATCGCTTCGCCGAGACGTCAGAGACAGATGCTGACTTGGACATCGTGGGTCTTTACGAGACAGGAAACGCATCACTGGTTCTGAAAGAAGCCCAAGTGAGGCATGCTGGGACGTACATCTGCACCGTTTACCTTCCTCACCTTCTGGCTCAGGTGGCCTTAGAGCTGGAGATAGTGGAGCCTCCAGCGCTGGCGGTGTACCCCTCCCCTCTGCCGCTGTCTGTCCCGGGGCAGGTGGTGACGGTCCACTGCGAGGCCTCCGGTTTCTATTCCCTGTCTCTGGACCTGGACTGGGAGTTCACTGACGCTGAGGGGAAGAAGCGCTCGCTCGGTCAGGGCAGCGTGACGGGCCACAGGCAGGCCAGAGACGGCACCTACAGCCAGAGCTCTCGCCTAGAGCTCGACTCGTTTAAACTGGGACTCGGGCGAGGCGGAGAGGTCAGCTGCGTAGCCAAACACCAGGGAGGATCTCGACGGGCCACTGTGACTCTGAATGTCATCGGTGTCAGTGCTCCGTCTATCGAGGACTCCATGGCCATGGTCGCTGTGGCTCTTGTACTTTACGGTGTCATAAAGGTCCTTTTCTGGACTTTCAGCTCTAACGGCACAAGCAATGGGGACTCCAGTGAtaagAAGGAAAAATAATCGTGGAGCTCGTCATGTCCTGCTGGACGTCTCCTGCTGGATGTCTCCTGCTGGACGTCTCTTCAGTCTgcagagagaaatgaaaacacTGTAAATAATCATCTGTGAATGCATGTACACCTTCTGATTtgtcctttaaaaaaacaaaaagttttcattGTCCCTGTAGCTTTGATTCGGACTTGAAATGAAGTTTGcgaatgtttaaatgtttaaaatgaaacacaaactGTGCAGTTACTTGTGCCGGGTGTTTGAGGATTCCTTGCTGtgaatttgtaatttaaaaaaaaaggatatggCTATAACATGCTTCGaactattttattaaaatgctctACTGTCTAGAAgagtttaatattaatagtatCGTATGGTACTTTTCTAacataaaatggtaaaaaattAAGCAGTCTGTTGTCTTCTTTCCAGtgaattaataataactaaaaaaaaaatagccaaaatgtaaaacattcacCATATACTTTAAGATGAATGAAGTTAAGGCAGagattaatataattaatagaatagaatagaatgatGTATCTGTAAtctgacagtgacagtgagcaCCAGTCAATCAACTGCTTTAAGGAGCTGTTGGCCAATCAGCACACAGGAGGCGGGGTTAGTCTGAAAACGggtagaaataaaatataacggTTTTTACTATAACACGGAAGTAGATCTTCTTCATGGTTTTAGTCAGAAGCAGCGCGACATCGCCACCTAATGACCGggacaatataataataataataataataataataataataataataataataataataataaaatgaataacctGAAGTGTTATTTTCAATATTGCATCAAACAGAATGATATAATTAACtgaatgctaataataaataaataaatagatagatagatagatagatagatagatagatagatagatagatagatagataaatagtcCAGAATGTAAAAGAGGAACATGTGGAAAAGCGTaatttgtgtgaatttgtgtggtgtgtgttgttgtgctTGTTACACCTCATTATAAAGTGAATTATGTCTCTATGAAGGACAATAAAGTTATTAAATGAC

Function

symbol description
tapbp Enables TAP complex binding activity; TAP1 binding activity; and TAP2 binding activity. Involved in MHC class Ib protein complex assembly; regulation of gene expression; and regulation of protein complex stability. Located in Golgi membrane and endoplasmic reticulum membrane. Part of MHC class I peptide loading complex. Implicated in MHC class I deficiency and severe combined immunodeficiency.

NR:

description
PREDICTED: tapasin isoform X2

GO:

id name namespace
GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K08058 TAPBP; TAP binding protein (tapasin)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941131.2 True 2531 mRNA 0.46 8 3296533 3306323

Neighbor

gene id symbol gene type direction distance location
vegfc vegfc coding upstream 43170 3193301 ~ 3253363 (+)
LOC113541301 NA coding upstream 1096998 2193949 ~ 2199535 (+)
LOC113544637 NA coding upstream 1111885 2174587 ~ 2184648 (+)
LOC113546173 NA coding upstream 1130749 2165623 ~ 2165784 (+)
dctd dctd,cep44,LOC108263714,LOC107550883,LOC107671033,LOC100699771,LOC107684975,LOC102306286 coding upstream 1132841 2151929 ~ 2163692 (+)
asb5b asb5,asb5b,LOC107752221,LOC107670925,LOC107737104,LOC107676689 coding downstream 1511 3307834 ~ 3325642 (+)
LOC113541782 NA coding downstream 44562 3350885 ~ 3353178 (+)
LOC117596854 NA coding downstream 50099 3356422 ~ 3358975 (+)
LOC113541773 NA coding downstream 66890 3373213 ~ 3376116 (+)
gpm6ab gpm6a,gpm6ab,LOC107670876,LOC107737106,LOC107752222,LOC107676686 coding downstream 128022 3434345 ~ 3503120 (+)
G38962 NA non-coding upstream 865446 2427812 ~ 2431087 (+)
G38948 NA non-coding upstream 869933 2411201 ~ 2426600 (+)
G38895 NA non-coding upstream 984082 2311651 ~ 2312451 (+)
G38826 NA non-coding upstream 1131048 2165170 ~ 2165485 (+)
G38812 NA non-coding upstream 1169866 2123461 ~ 2126667 (+)
LOC117596855 NA non-coding downstream 94472 3400795 ~ 3403106 (+)
LOC117596918 NA non-coding downstream 208778 3515101 ~ 3525121 (+)
G40287 NA non-coding downstream 377020 3683343 ~ 3685205 (+)
G40374 NA non-coding downstream 558373 3864696 ~ 3865000 (+)
G40586 NA non-coding downstream 823792 4130115 ~ 4130322 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 1205190 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 1299268 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 2071932 1194219 ~ 1224601 (+)
trmo trmo other upstream 2107939 1165845 ~ 1188594 (+)
coro2a coro2a other upstream 2154599 1102778 ~ 1141934 (+)
LOC113545357 NA other downstream 525544 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 1357993 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 1957259 5263582 ~ 5357860 (+)
G41047 NA other downstream 2012211 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 2589108 5895431 ~ 6228685 (+)

Expression


Co-expression Network