htra3a (LOC108263851)


Basic Information

Item Value
gene id htra3a
gene name LOC108263851
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7680769 ~ 7694527 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941359.2
gagagagagagatttctcaCAAGTTGTATAGCTGAGCATttgagaaggagagaagaaacAGCTCTGCTTCTGTACTACAGGCGACACACAGTATGAAACGGATTATGAATGGTTTGTGAAGATGATTCAGCTTCACTCATGACTCTGGCTGGCACGGTGACTGTGCACGCGCTGATGTGAGGAAATGTGATTTCTTCACGGACTTTTCACCACACCACCTCAGTTCACTGGTCTGACCACAGGATGCGCGCGTTGCTTTTCGCGGTGCTTTTCGCGCATGCCCTCGCAGGACCCGAAACGCGCGCGCCCTGCCCGGCCACGTGCGACATGACCAAGTGCCCGGCGCCGCGTGCTGCATGCCAGGGCGGGCGCGTGCTGGACCGGTGCGGCTGCTGCGCGGTGTGTGCTGCGGGGGAGGAGGGGGCAACCTGCGGGCGCAAGCGTGATGCTCCCTGCGCCTCGGGGCTGGAGTGCGTGCGCTCCGGGGCAAAGAGATCCTCTAAGGGGGTTTGCCGGTGTAAGAGCGGTCACCCGGTGTGCGGCAGCGATGGTAAGACTTATGAAAGCCCGTGCAGGCTGGAGGCGGCCGGTCGCAGAGCGCGGCAGCGGGGGAACGCTCCGGTAACGCGCGCGCACAAAAATCAGTGCGCATCTGCAGCTCCAGGTCCCACACACCACAACAGCCCCAGGTACAAGTTTAACTTCATCGCTGATGTTGTGGAAAAAATCGCGCCAGCTGTGGTCCATATCGAGCTTTTCCTCAGCCATCCGCTGTTTGGCCACCACGTGCCGTTGTCCAGCGGTTCAGGGTTCATCGTGACAGAATCTGGTGTGATCGTGACTAACGCTCATGTGGTGAGCAGCAGTGCCACTACAGCGGGCCGACAGCAGCTTCGGGTGCAGCTTCACGATGGCAAAACGTACGAGGCCTCCATAACAGACATCGACAAGAAGTCTGACATCGCCACCATCAAAGTCAACCCTCGGAAAAAGCTTCCAGTTCTTCCTCTGGGCCACTCAGCTGACCTGCGCCCGGGCGAGTTCGTGGTGGCCATTGGCAGTCCGTTCGCTCTGCAGAACACTGTAACTACAGGCATCGTGAGCACGGCACAGAGAGACGGCAAGGAGCTCGGCATCCGGGACTCAGACATGGACTACATTCAGACTGACGCCATCATCAATTATGGAAACTCAGGAGGCCCACTTGTTAACCTTGATGGTGAGGTTATTGGGATAAACACACTGAAGGTGACAGCTGGGATCTCCTTTGCCATTCCATCAGACCGTATTAATCGATTTCTAGACGAATCTTATGATAAGCAGTACAAAGATAAACAGAGACTACTTAGGCTGCAGTACACGCCATCTCAGCCTGTGGTGTCTGACTCAGATGTAAAAGGCACAAAGAAAAGATTTCTTGGAATCAGAATGATCACCCTCACAAAAGAcctgGTTAAAGAGATGAAACAGCACGATCCATATTTCCCAGATATCAGCAGTGGAATTCTTGTTCATGAGGTCATTCCAGATTCCCCTGCGCAAAAGGGTGGACTTGAAGCAGGTGATGTGATTGTGAAACTAAATGGCCGTCCATTGGTCAGCACTGATGATATCCAGTTGGCGCTTCATGGAGACATGGCCCTTCTTTTGGAAATTCATCGTGGCAACAATAGTTTTCTATTCAACATTGAACCACGTGTCCTTGTGcagaaataaatagtaaaataaaggTTTACTAGAAAACTGGTGTGGATTGAGAAAACTGGTGTGGATTGAGACGACATTAGGTCAAGTCAAGTCAgttggctttattgtcatttcaaccatatacagctagttagtacacagtgaaacgaaagaacgttcctccaggaccatggtgctacatcaaacaacacagaactacacatGTAGAGCCTACACATCTCTACTTAAAGTGCACGTGCAAATGTgcgcaaacagcacaagacagtacaatatctactaaaacaggacaataggcacagttcGAGACAGTGCAGCACCGACCAGTACGCTgttctagtatgaaagtgtcagatataacagtagtgcaaaagaataacaatataataaattgctatgaatgtaaacataacatactatgacatagtattcgGCAAataagcttataccatatatgggCTTGGCATTtgttggggtagcagccaggtagaaaGTATAGCAAGAATAAAGAcaagaaattatatacaatattttataaatacaatacCAGCAACAAAATGTAGGTactaaatacagaaatgtgctaaaattgcaaagggagtgggatggtgttcagttgagtatgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtagtgtgtgttgAATTAAAAGTgcgattgtttttttttaaattttgtatgGATGAGAAGATGGAGGCTACATATGAACAAGTGAACACTCACTGtaattgtaactgtaaaagtgcagttaagATATGCCATGTATTAATGACCAGAGAACATCATTGTAAATGATGACTAGGATTTTACAAGTTTCTCTGAATTCAACTGAAAACTCAgactttacattattttatattcagattTTGACATACAGTCATACAGTCACTGGAGCCAAATGTCTGTCTTTAAATCCTAAGTCCCCTCACTGTATTCACTACAAACTACCTGAAAATGTTCTTTGATATAACTTACGAAATAcactattttaaacatattttaaactgACAGGCTGAGATATGTTCTTGGCTACATACAGTAGCATTGTAGTACAGTGTTAATAATTTATGTGCTGTTTATCACACCAGTGCAAGCAGGTCTTTCTATATACACTAGCATGtatatttttta

Function

NR:

description
PREDICTED: serine protease HTRA3-like

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K08669 HTRA2, PRSS25; HtrA serine peptidase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941359.2 True 2868 mRNA 0.46 10 7680769 7694527

Neighbor

gene id symbol gene type direction distance location
LOC113543305 LOC108262750 coding upstream 2910 7675236 ~ 7677859 (+)
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 259840 7413508 ~ 7420929 (+)
LOC113543274 LOC108263610 coding upstream 272653 7396425 ~ 7408116 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding upstream 287522 7384072 ~ 7393247 (+)
LOC117596353 LOC108263508 coding upstream 322208 7356734 ~ 7358561 (+)
LOC113543264 NA coding downstream 9922 7704449 ~ 7712546 (+)
LOC117596357 NA coding downstream 21513 7716040 ~ 7735909 (+)
gpr78a NA coding downstream 55109 7749636 ~ 7755159 (+)
cpz LOC108263841,LOC108434808 coding downstream 63083 7757610 ~ 7771338 (+)
lrpap1 lrpap1,LOC107749950,LOC107551171,LOC107714242,LOC107556528,LOC107674255 coding downstream 375294 8069821 ~ 8080290 (+)
G42295 NA non-coding upstream 35847 7640935 ~ 7644922 (+)
LOC117596850 NA non-coding upstream 205729 7473370 ~ 7475040 (+)
G42208 NA non-coding upstream 258473 7422091 ~ 7422296 (+)
G42093 NA non-coding upstream 286985 7348159 ~ 7393784 (+)
G42304 NA non-coding downstream 27122 7721649 ~ 7721851 (+)
G42307 NA non-coding downstream 38915 7733442 ~ 7733655 (+)
G42442 NA non-coding downstream 172148 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 214897 7909424 ~ 7909698 (+)
G42522 NA non-coding downstream 480958 8175485 ~ 8176073 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 9359 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 50629 7620545 ~ 7630140 (+)
G42075 NA other upstream 459746 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1452084 5895431 ~ 6228685 (+)
G41047 NA other upstream 2339019 5318534 ~ 5341750 (+)
G42685 NA other downstream 771220 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 775097 8469624 ~ 8469881 (+)
sprn sprn other downstream 2857732 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2900047 10594574 ~ 10608704 (+)
dntt dntt other downstream 3405066 11099593 ~ 11207862 (+)

Expression


Co-expression Network