LOC113543305 (LOC108262750)


Basic Information

Item Value
gene id LOC113543305
gene name LOC108262750
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7675236 ~ 7677859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941415.2
gaatgaataaggaAATTTCCAAATAAACCTTTATGATTCTTAATTTCTTTGCAGCACTAGCGAAAATGCCTAAAGAGCCATCTATATACAATACAGTGCTTTAGGGAACTACAAGTGTTGTGCCTTCCCCTAACATTCTGCCAAGAGTCTGGAAATGGAGCAACTCTCGCGAGAGTTCGTCATCTCGTTCATCCTCGGGTCAGTTCCACTAACAGCGCGAGAAATGAAACAATAACGGCACGCGCTGGTTACAGGCAGGCGGCGATGCTCCCGATGAGCTCTTTATAGATGTTTTGTTATTAATAGTTTGACTTGAGGAAAGTGAGATAAAGCTCTACAGATGGACTCGTGTGGGTTTTGGATCCCGACTGTGTGTCGCACCTGTAAAATAATCGTGCTCGGAGACGCGGGTGTGGGAAAGACGAGCCTCACTCACCTCTACTGCACCGGACAGTTCCCCGAGAAAACCGACTCCACCATCGGCGTGGACTTCCGGGAGAGACTGCTGCACGTGCGGGGCGACAAGATCAAGGTGCAGTTGTGGGACACGGCGGGTCAGGAGCGTTTTCGGAAGAGCATGGTACAGCACTACTACCGCAACGTACACGCAGTCGTCTTTGTCTATGACGTCACTAATGCGGCTTCGTTCTGCAGTCTGCCCCTCTGGATGGAGGAGTGTCAGCAGCACTCGCTTGGACCAGATGTGCCTCGCGTGCTTGTGGCTAACAAGGCCGACTTGGTGACCTTTAGGGTGGCCTCAACCATCGAGCAAGCACGGCACTTAGCCGAGGTCCACTCAATGCCCTTCTACCTTTATTCAGCTAAAGGTGGCAGCAGAGAGCAGTTGGACACCATCTTCAACAAACTGGTACAGCAGATAAGTAGGCAACGAGGGAAAGAAGCAGAGGCAGTCAAGAGTATTAAACTTACTCCAAAAGCCAACcctgaggaagagaaaaagggGAAATGGACTTGCAACTGCTGATGGAGGGATGACGGGTGAAATGAGGACATACTGGCAATCTTTTATTCCAGACTTCCTCTAcacttcaggactgtttttaaCACATCCTTGTTGATTTCTCATCAAGACTGTGAAATGCAAAACACCTGCATTCCATCAGAGGAAAGAGAATTGCACTAGCCCTGGGCATCAAGAACAGTGTAATTGAATCAACTGCCTTTGCAATTTGCACAATCATATCAGCTAAATAGCCAGCATAATAGTTtagctgtaatgctgtaatgtaGAAATGAGTTGAGTTAGCTAAATAGAGCATTGCTGTTATTGACCTTTGAGATTTTCATATCA

Function

NR:

description
PREDICTED: ras-related protein Rab-33B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941415.2 True 1312 mRNA 0.47 2 7675236 7677859

Neighbor

gene id symbol gene type direction distance location
LOC113543333 LOC108263754,LOC108444223,LOC103040975,LOC107674259,LOC107737089,LOC107559635,LOC107551115,LOC105903933 coding upstream 254307 7413508 ~ 7420929 (+)
LOC113543274 LOC108263610 coding upstream 267120 7396425 ~ 7408116 (+)
faah2a faah2a,LOC108263609,LOC108434801,LOC107737091,LOC107559634,LOC107551107,LOC107712025,LOC107674256 coding upstream 281989 7384072 ~ 7393247 (+)
LOC117596353 LOC108263508 coding upstream 316675 7356734 ~ 7358561 (+)
LOC113541239 NA coding upstream 318543 7354068 ~ 7356693 (+)
htra3a LOC108263851 coding downstream 2910 7680769 ~ 7694527 (+)
LOC113543264 NA coding downstream 26590 7704449 ~ 7712546 (+)
LOC117596357 NA coding downstream 38181 7716040 ~ 7735909 (+)
gpr78a NA coding downstream 71777 7749636 ~ 7755159 (+)
cpz LOC108263841,LOC108434808 coding downstream 79751 7757610 ~ 7771338 (+)
G42295 NA non-coding upstream 30314 7640935 ~ 7644922 (+)
LOC117596850 NA non-coding upstream 200196 7473370 ~ 7475040 (+)
G42208 NA non-coding upstream 252940 7422091 ~ 7422296 (+)
G42093 NA non-coding upstream 281452 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding upstream 310305 7361200 ~ 7364931 (+)
G42304 NA non-coding downstream 43790 7721649 ~ 7721851 (+)
G42307 NA non-coding downstream 55583 7733442 ~ 7733655 (+)
G42442 NA non-coding downstream 188816 7866675 ~ 7866918 (+)
G42447 NA non-coding downstream 231565 7909424 ~ 7909698 (+)
G42522 NA non-coding downstream 497626 8175485 ~ 8176073 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other upstream 3826 7649198 ~ 7671410 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other upstream 45096 7620545 ~ 7630140 (+)
G42075 NA other upstream 454213 7203950 ~ 7221023 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 1446551 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 2317376 5263582 ~ 5357860 (+)
G42685 NA other downstream 787888 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 791765 8469624 ~ 8469881 (+)
sprn sprn other downstream 2874400 10552259 ~ 10558295 (+)
LOC113543929 kmo,LOC101885014,LOC107549141,LOC107665616 other downstream 2916715 10594574 ~ 10608704 (+)
dntt dntt other downstream 3421734 11099593 ~ 11207862 (+)

Expression


Co-expression Network