LOC113543388 (apopt1)


Basic Information

Item Value
gene id LOC113543388
gene name apopt1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18011815 ~ 18015780 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941529.2
GTAACCACGTGACACGAAGGCGACAAAAGCCAGCTTCGTGGTACATGAGGTGATATATAAGCGCTAGCTTGGTAGCTAGAAGTTTGTGAAGGATGTTAGTTTGGTGGTAATGTGATTTGAAATGAATGTCAGAAGAGTAGGGTGCTTGTTCTttcggtctcagtgtttaataCCTCGTGGTGTCCTGACGAGTGTTCGACACAGCACTGAGCAAACACCGCCGGACATAACAGAGAAAACCAGATTTAGCCCAGCACCAGCATCTAAATATGATTGGATTGGGCCACCAGACAGACTGTCAAACCTGCGGCCGATCATATACCACATCCCTGAGAAGGAGACCCAGCTGGAGAGGAAACTGAGACATCTGAGGCAGGAAACAGAGGACTGGAACCATGAGTTCTGGACAGGACAGAATGTCACCTTTAGCAAGGAGAAAGAGGAATACATACAGTCACAGCTGAAGGCAAAAGGACTGACAGAAAGAGATGAGAATGGAAGAAAAAGGAATTTAACTAGTGAGGAAATGGCAGCCTTCTACAAACACTTCTTAGACAAAAACTGTATGACACATGCAGCCTATAACAAaGAATGGTACAGACGGAACTTCACCATTACAGCACTGATGGCCAGAGTAACTCTGTGTAATTTCTGGAGGACAGTAACTGGTCAAGCGAGGAGTAAAGGCAAACCCACAACAATGTCCAAATAAAGACTCTGTCAATCATTTTCTAGTGTCCATGCTGTTCAGCTGAACATCATGACATTCCACAAAGATTTCAGTAATGATGATCACAGTGGCAATCTGTCaaaatgtaaatctaaaaatGCATTATAGTACTCCTATGGTATATTCATTTAACTATGTAACAAGTTCAGATGTATAAAGAGTTGTATTCTGAATGTGTAA

Function

symbol description
apopt1 apoptogenic protein 1

NR:

description
PREDICTED: apoptogenic protein 1, mitochondrial

GO: NA

KEGG:

id description
K23506 APOPT1; apoptogenic protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941529.2 True 910 mRNA 0.42 5 18011815 18015780

Neighbor

gene id symbol gene type direction distance location
trmt61a trmt61a,LOC107582491,LOC107678528,LOC107698149,LOC107589545 coding upstream 29070 17971726 ~ 17982745 (+)
mark3a mark3,mark3a coding upstream 46509 17943331 ~ 17965306 (+)
LOC113541463 eif5,LOC107708426,LOC107721218,LOC107582488,LOC107589547 coding upstream 71979 17932252 ~ 17939836 (+)
tnfaip2b LOC108263219 coding upstream 85527 17921135 ~ 17926288 (+)
LOC113544778 NA coding upstream 92478 17903229 ~ 17919337 (+)
klc1a klc1 coding downstream 2615 18018395 ~ 18046867 (+)
fignl1 fignl1 coding downstream 40346 18056126 ~ 18059166 (+)
mocos mocos coding downstream 124909 18140689 ~ 18149740 (+)
anxa11a anxa11,LOC108263209,LOC106613295 coding downstream 142683 18158463 ~ 18173187 (+)
kcnma1a kcnma1 coding downstream 211480 18227260 ~ 18372489 (+)
G48323 NA non-coding upstream 25244 17986281 ~ 17986571 (+)
G48305 NA non-coding upstream 70493 17902052 ~ 17941322 (+)
G48302 NA non-coding upstream 114359 17896322 ~ 17897456 (+)
G48209 gbf1 non-coding upstream 242879 17726419 ~ 17768936 (+)
G48133 NA non-coding upstream 408661 17601874 ~ 17603154 (+)
LOC113541886 NA non-coding downstream 65837 18081617 ~ 18084799 (+)
G48478 NA non-coding downstream 158520 18174300 ~ 18174499 (+)
G48494 NA non-coding downstream 206288 18222068 ~ 18222547 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding downstream 444893 18460673 ~ 18462196 (+)
G48482 NA non-coding downstream 657531 18673311 ~ 18701906 (+)
LOC113541016 ankrd2 other upstream 1034786 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 1544465 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 1702917 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 1774273 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 1877813 16124627 ~ 16134002 (+)
dlg5a dlg5 other downstream 160961 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 886658 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 1011188 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 1198427 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 1240284 19256064 ~ 19262088 (+)

Expression


Co-expression Network