usp38 (usp38)


Basic Information

Item Value
gene id usp38
gene name usp38
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5825410 ~ 5840770 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941576.2
CAGGATGATGACGTTTATGTTCATCAGCTGATTGTAGGACTAGAGAAGAATCAAAACACTGCGTTAAGATAAAACtggattaaatttatttatgaagcGCATCGTTACAGATTGTTCAGGGATTGTGTAAAATGACTtcttttgGTTTTCCCCTCTCAGCCGCTCCTTTCGTCTCCAGCTTCCCCATGGTGCAGTAGAGCTCTGTAATGGATAAGATCCTGGAAGGGCTGGTGAGCTCGTCTCACCCGCTCCCTGTTAAGCGAGCCATAGTGAAGATGGTGGTGGAGGCGGCTGAGAAAGAGGTGACGCAGGAGCAGTGTCAGGCCCTGTACCAGCTCACGGCACGCCTCATTCTGCTGGGTGAGGACGCCTTCCAGCGGCAGGTGGGCCTCCAGGTGCAGGAGGCGTATGCGCGCTACCACCGTGACGAGTTCGCCCGCTTCCTGAGTAAGGACTATGTCCTGGAGCTGCTGCGTCACGGCTGCAGCCCTCTGGACCCTCGTGATCCGGCCATACTGGACTTCCTGCATGGCTGCTTGCGGCTTCTGATCAGCTGCCCGGCGGTGCTAGAGCTCGCGCCGACACTGCAGATCGAGGTCCTGCGCATGGTGTGTGAGCGCCCTGACGCCGCGTTCTGCAGCAAGCTCGCCACGCTGCTCAGCGACTTCCCCCAGTGTGTGCCGCGCAACAAAGCCGCCGTGCCGCTCTGCCAGCAGCTGGTGCGCACGTTCGCACATTTCCAGTGTCCAGCGGCTGAGGAGGCGGAGCTGAGGCGCTACGTAGGGCAGGTGGGCTGCGTGGCGGCGTTGCTGCAGGGCATCTGGAAGGCGGAGCCAGCCACGCTTCTGCCCTCACTGCAGGAAGTGTTCGCTATTATCTCCTCAACAGATCCGTCCTTTGAGCCGTCCATTGCTCTGGCCAGTCTGGTGCAGCACATCCCTCTGCAGATGATCACAGTCCTCATCAAGAGCCTCACCACTGACCAAAACGTCAAAGACGCCAGCATGACACAGGCCCTCAGCAGGATGATCGATTGGCTCTCATGGCCACTAGCCAATCACGTAGACACCTGGGTTATTGCTCTTCTGAAGGGACTGGCTGCCGTGCAGAAGTTCACCATCCTCATCGATGTCACCGTGCTTAAAATCGAGCTGGTCTTTAACCGTCTGTGGTACCCTATAGTGAGACAGGGAGCATTAGCAGTCCTCTCTCACATGCTGCTGAGCTTCCAGCACTCGCCAGAGGCCTTCCACCTGGTGGTCCCTCACGTGGTAACTTTGGTGAAGTCTTTAAAGAGCGATGGCCTCCCTACCAGCAAAGCCTTCCTGCTGCAGTTCACCGAGCTCATCCACTGCATGATGTACCAGTACTCTGGCTTCCCTGACCTCTATGACACCATCCTCGAAGTCATTAAGGATCTCCCTAAACCCAGTGAAGAGAAGATCAAGTATGTGCTGAACCAAAGTGCCTGGACCTCGCAGTCAAACTCTTTCGTCTCTGGACTGCTGAGGCTTACGGGCAAATCGGAGACAGGAAAGACGGGACTCGTGAACTTGGGCAACACATGTTACCTGAACAGCATCATTCAGATGCTGTTCATGGCTACAGATTTCAGACGGAACGTATTATCTCTGAACCTGAACGGCTCAAATACGCTGATGAAGAAACTACAGCTTCTCTTTGCTTTCTTGGCGCACACTCAGCGAGCAGCGTACGCACCGAGGAGCTTTCTTGAAGCGTCTCGGCCACCCTGGTTCACAGCGGGCTCCCAGCAGGACTGTTCTGAGTATCTCCGCTTTCTCTTAGACAGGCTACACGAGGAGGAAAAGACTCTCCGAGCTCTCCAGGCACCCAAACCTAAGACCATGTCCTCTGACGCTGAGGGTACTGATGATGCAAAAGCTCAGAATATGACCAGCACCCAGTCTCATTCTCAGACTAAACTGGTGGACACTGATGGTGATGGACGGACTCTGGTGGAGCGAATGTTCGGCGGGCGTCTCTCCACGGGCATCCGCTGCCTGCAGTGCCACAGTCTTTCTGAGAAAGAGGAACCGTTTACGGATCTTTCTCTCGCTTTTTGCCCATCGGGCACTGTGGGCTCCTTGACCGTGCAGTCCCACCAGGGGGCAGTAAATGGCGGCAGTGAGAACTCTGAAGGCACTGCGAAGGATGAGCGGAGCGAGGAGAGACCCAAGACGGAGACAGTGCTGTCCCTGTCAGATCTGCTTGAGTATTTCCTGGCACCAGAGATCCTGGAGGAGGAGAATTGTTACTTCTGTGAACGCTGCAGCTCCCTACAGCGGGCGGAAAGGGCCATACACGTGGTGACGGCCCCTGAGTACCTCATCCTCACTCTTTTGCGCTTCTCGTATGACGCGACGTGCCACGTGCGGCGCAAAATCCTGGACAATGTAGGCATCCCGCTGCAGTTCCACCTACCTGTTCACCAGCACAGCACTTCCTTAtcttcatcaccaccaccatcggTGCAAATGGACTCTCCAGAGAGTGGCGAGAACTTGGCCAAGAAGCTAAAACCTTCtcataaagagaaagaagaggaagacgGAGTCTTAACGGACAGCGGGAGAGAGAGCGGGAGAAGGGGCTGGGGGTTAGGGATGCGGTGTGTACCTTACGGCCTGTGTTCTGTTGTGATGCATTCTGGGATGTCCTCGGAGAGCGGCCACTACTACTCATACGGCAGGAACATGAGCAGTACGTCGGCCAATCCCTCTTTTAAGAGTCCGGAATCAGATTCCGGTGTCGGCCTTTCAGAGGGCTCGACAGCTTCACAGGAAGTACTGGAGTGTGCAGGGCAAGACTCCGGGGACTGGTTCCTGTTCAACGACAGCAGAGTGACCTTTACCAACTTCCAGTCCGTGCAGAACATCACGAGCCGCTTCCCCAAGGACACGGCCTACGTCCTGATatacaggaaacaggaagaagTTGGAGGGCAGGCTGGGGGTTCAAGAGCTACTGTTAATGGCTCAAGGTTCAATGGGGAACCACCTCTTCATAAAGATCTAATGGATGCCATCACCAAAGACAACAAACTCTTCTTACAGgagCAGGAGCTTAACGCCAGGGCCCGTGCTCTCCAGGCCGCCTCGGCCTCCTGCTCGTTTCGACCCAACGGCTCAGATGACAACGAGCCCCCAGGAAGCTGTGGGCCTTcgggtggaggaggaggaggtggaggcgGCGGCGGCTTCAGCACTGTCAGCAGACTGGTTTTCTGAGACTGGGACACTTTCAGACTGTAACAGAGCACTGGACTCAAACACTCAACACTGGACCTCCTTCTGTCTGAATCCAACATGCAGAAATtctcaataactcaaaaccACCTCACAAGCTTTCCTTCACTTACATATCCCTTTTTTAAGCCTTCTTACAAAGTGTTCACGAAAGCActttttggtaacactttattatacCACATAAAGGGCCTTTGTAATACATTGCGTAAATCCTTTTCTAGAGAAATGCTGGAGAATTTATGAAATGCTTATCTCAGCACTAGAGATTTTATCTTATTTGGGTTTacatgaaagagagaagagaaaacaacCTGTAATTATCACTGCAGattgactttttaaacttttttttttttcaaacttattattaattagattgtttttattaacagcATGTTGATAACACTGTGAAAGCTCTAGAAGCTGTATATTAGGGCTTCCTAAGTGttataaatgcaaatctgaTTAGTTTGAGTGCATTCGAATCATATATTCAGCTCTCACATTGggttcaaaaaaataaaatgcaaactgCATTGAAATGGTGCTTCATAAtgcttttaaatgcaaatggaGCACCAGCACTTCAGCCTCAATGCTCCAGTAATAAGTAGATACAGTAGCTACACACTAAGTGATAATGAGCTGTAATGATAACCTAGGGTTCTtctgtcttctttcttttatgTAAAAACAAAGCAATATACTTCATAAAAACAGTTAGTCATGTGACAAGGTTTTGACTTTACATAAAAGCCTCAGCTGTtcctttattaaatatttgtgcaatgcttatgaatgtgttatgaaggtcCCCATATAAAGTGTTACCCTTTTTTTACGGGTTGTGACCGATCCATTCATGGTCATGTAATCTTCATGGGTACCATTGCTGTCTTATGCAGTCAGAACTGATTCTGATCGCATTAACCTCTGTAAAGAAATCAGattttagctttttatttttttccccaaacatgtAAGCAGTCATGCTCCACTCAGACTCACAGCCATCATACTTGAACTAGTGTTTGTCTACCTGTCCATGGGTTATGTGGCGTACCTATAGCCCATGGACAGATCACCTGACGTGCTGCAATACATTTACACAGAAGGATGCAATACTGATTTTTATTCCATTGTGGAATTTAAGCTATAgtttaaaatagcaaaaataatatCACTGAATTATTATAATGGGATAACATCAAaaa

Function

symbol description
usp38 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Is expressed in female organism. Orthologous to human USP38 (ubiquitin specific peptidase 38).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 38

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K11854 USP35_38; ubiquitin carboxyl-terminal hydrolase 35/38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941576.2 True 4483 mRNA 0.50 11 5825410 5840770

Neighbor

gene id symbol gene type direction distance location
hhip hhip,LOC107654904 coding downstream 292930 5498440 ~ 5532480 (-)
LOC113541269 NA coding downstream 340798 5470957 ~ 5484612 (-)
LOC113537592 abce1,LOC108262828,LOC107653221,LOC108441533 coding downstream 368230 5445363 ~ 5457180 (-)
smad1 smad1,LOC103023608,LOC107734580 coding downstream 392255 5403494 ~ 5433155 (-)
mmaa mmaa,LOC102789515 coding downstream 423761 5391156 ~ 5401649 (-)
il15 NA coding upstream 388874 6229644 ~ 6243139 (-)
znf330 znf330 coding upstream 412753 6253523 ~ 6267711 (-)
elmod2 elmod2,LOC107594343 coding upstream 543830 6384600 ~ 6392522 (-)
herc3 herc3,LOC107684306,LOC107583224 coding upstream 709076 6549846 ~ 6583135 (-)
LOC113542150 LOC108263070 coding upstream 744015 6584785 ~ 6602144 (-)
G41174 NA non-coding downstream 224267 5599984 ~ 5601143 (-)
G41114 NA non-coding downstream 544187 5277951 ~ 5281223 (-)
LOC117596884 NA non-coding downstream 560621 5261191 ~ 5264789 (-)
G40992 NA non-coding downstream 1013985 4809868 ~ 4811425 (-)
G40980 NA non-coding downstream 1050757 4774344 ~ 4774653 (-)
G41300 NA non-coding upstream 35331 5876101 ~ 5876391 (-)
G41491 NA non-coding upstream 454462 6295232 ~ 6302088 (-)
G41563 NA non-coding upstream 530885 6371655 ~ 6371866 (-)
G41731 fam13a,LOC107684269,LOC107757018 non-coding upstream 694934 6535704 ~ 6538550 (-)
G41768 NA non-coding upstream 836360 6677130 ~ 6680273 (-)
gab1 gab1 other downstream 5897 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 597443 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 919171 4893902 ~ 4906239 (-)
dclk2a LOC108263760,LOC108429594 other downstream 1215960 4545139 ~ 4609450 (-)
trnah-gug_3 NA other downstream 2790857 3034482 ~ 3034553 (-)
lef1 lef1,LOC103361279 other upstream 1320704 7161474 ~ 7204699 (-)
maml3 maml3 other upstream 1598134 7438904 ~ 7589663 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 2293871 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 2629216 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 2629588 8470358 ~ 8470429 (-)

Expression


Co-expression Network