vdac2 (vdac2,LOC108444242,LOC107582506,LOC107747461,LOC107690181)


Basic Information

Item Value
gene id vdac2
gene name vdac2,LOC108444242,LOC107582506,LOC107747461,LOC107690181
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18700916 ~ 18711275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941600.2
GGAGGCATATCGGGTAGCGACAGATATCTGTGCTGTACAGTCTCCTTCAGTTCGCCCTCCAATCCTTTCGGTTCACCACGGCTGCTTAGCGCTGGGGTTAAGTTAATTAAACTTATTTAAGTTAATCCACAGCTTTATCTATTAGCAGACAATGGCAGTCCCCCCAACATATGCTGATCTTGGAAAATCTGCCAAGGACATCTTCAACAAGGGATATGGCTTTGGTCTGGTGAAACTTGATGTCAAGACGAAATCAGCCAGTGGAGTGGAGTTTAAGACTTCAGGTTCCTCCAACACTGACACCAGCAAAGTGGTGGGCAGTCTGGAAACTAAATACAAGAGGCCTGAGTATGGCTTGACCTTTACGGAGAAGTGGAACACTGACAACACTCTAGGAACAGAGATCACCATTGAAGACCAGATTGCAAAAGGGCTGAAGCTGACTTTTGATACAACCTTCTCACCAAACACAGGCAAGAAGAGTGGAAAAGTCAAGACAGCCTACAAACGGGAATATGTCAACTTGGGCTGTGATGTTGACTTCGACTTTGCTGGTCCAACTATCCATGCTGCTGCTGTAGTTGGTTATGAAGGATGGCTTGCTGGCTACCAAATGTCTTTTGACACAGCCAAGTCCAAGATGACCCAGAACAACTTTGCTGTAGGCTACAAGACCGGCGACTTCCAGCTGCACACCAATGTTAATGATGGCTCAGAGTTTGGTGGCTCCATCTATCAGAAAGTGAGTGATAAGATGGAGACAGCGGTGAACCTGGCCTGGACTGCAGGCAGTAACAGCACACGCTTTGGCATCGCTGCCAAGTACCAGCTGGACAAGGACGCCTCCATTAGTGCCAAAGTGAACAATACCAGCCTTGTTGGTGTTGGATACACACAAACTCTGAGACCAGGTGTGAAGCTGACCCTGTCTGCCCTGGTTGATGGAAAGAGCATCAATGCAGGTGGCCATAAGCTGGGTTTGGGGCTGGAGCTGGAGGCCTAAAATCCTGCACTCACTCATATCAGGGACAAGGGAATATCAGAGGAATCTGGCCTTAAATCTTAACCAGCAGGGGAATTCTGGATGGGAAGGGATTTGTTCAAAGACTCCAACAAATACGACCATTTTTAGTAGCCATTGCAGTGGTGTTCATTCTTTTCCCCGTGGTGTCTGTTTTTGGTTAGTACTACTGTTAAATACAGTCACTTTTGGTTCTGCCGCAAATCTGATTTCTTATCTCACACTCCTTTGTTAGTTTAATGCTCTCCTGTTGCAGCGGTGGGTGTCTAAGCCTGCATGTTGCGTTTCCTCTCCAGTAAGGGATTTGTGGTATTTGGGAGAatgtgatggattttttttcacctgtgTCTATCACCTGATATTCCTTAGTCAGCTGAACTTAATATGTGCAACCattaactacattttaaaaccCATATctgcttatatttaaataatgttatttttctttccataCACACAAGAAGAACCTTGCTCCATAATACCATTTCTCTCTGTCAGCCATCATGATTTGAAACCTAGTTGCACTTGAATCCTGCCCTTAAACTAAGCAGTTTTTGGGTGGCctaaatggatgaatgaaagcAGTTGAAACCTGTTTGGGAGAGCATGGCTGGCATGTTCGTTTTTTTCCTTGCAAAGATGACTAGGTGGAGCTTACGGTAATGCCAAAATGATGTGTTTTGAGTACCTAAAGCTTTCATTGTTGCCATTATGAACCTGATTTGCTGAGGTCATGCTTTCACAAAACCGTAGAGGTcctcatgtgtatgtgtaaactTTTCAATAAAGTCTTTGAACCCCA

Function

symbol description
vdac2 Enables channel activity and identical protein binding activity. Acts upstream of or within calcium import into the mitochondrion; fin regeneration; and regulation of heart contraction. Located in plasma membrane. Is expressed in several structures, including lens; pectoral fin; pericardial region; solid lens vesicle; and ventral mesoderm. Orthologous to human VDAC2 (voltage dependent anion channel 2).

NR:

description
PREDICTED: voltage-dependent anion-selective channel protein 2-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15040 VDAC2; voltage-dependent anion channel protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941600.2 True 1826 mRNA 0.45 9 18700916 18711275

Neighbor

gene id symbol gene type direction distance location
zgc:110045 zgc:110045,LOC108262845,LOC108444131,LOC107582498,LOC107708438,LOC107721227,LOC107678543 coding downstream 542732 18128349 ~ 18158184 (-)
vwc2 vwc2 coding downstream 578198 18108022 ~ 18122718 (-)
ikzf1 ikzf1,LOC107721232,LOC107589539,LOC107708437,LOC107698154 coding downstream 619450 18063825 ~ 18081466 (-)
ttl ttl,LOC107678537,LOC107698152 coding downstream 646019 18047425 ~ 18054897 (-)
bag5 bag5,LOC107678581 coding downstream 690323 18001657 ~ 18010593 (-)
march8 march8,LOC107095557 coding upstream 5608 18716883 ~ 18786463 (-)
zfand4 zfand4 coding upstream 77426 18788701 ~ 18807597 (-)
washc2c fam21c coding upstream 98800 18810075 ~ 18828322 (-)
alox5a alox5,alox5a,LOC107747471,LOC107582511,LOC107690200,LOC107678516,LOC107708393 coding upstream 120276 18831551 ~ 18837797 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding upstream 133877 18845152 ~ 18852107 (-)
G48476 NA non-coding downstream 527734 18167020 ~ 18173182 (-)
LOC117596862 NA non-coding downstream 609303 18087504 ~ 18091613 (-)
G48419 NA non-coding downstream 616111 18083657 ~ 18084805 (-)
G48411 NA non-coding downstream 654030 18037687 ~ 18046886 (-)
G48368 NA non-coding downstream 713285 17987422 ~ 17987631 (-)
G48938 NA non-coding upstream 132478 18843753 ~ 18844635 (-)
G48940 NA non-coding upstream 142238 18853513 ~ 18853713 (-)
G48947 NA non-coding upstream 179288 18890563 ~ 18890812 (-)
G48954 NA non-coding upstream 216907 18928182 ~ 18929502 (-)
G48970 NA non-coding upstream 245882 18957157 ~ 18957459 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 87395 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1039497 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1126494 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1224824 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 1718187 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 605212 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 903442 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 1005325 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 1470778 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 1513634 20224909 ~ 20256520 (-)

Expression


Co-expression Network