spred2b (spred2,LOC108263653)


Basic Information

Item Value
gene id spred2b
gene name spred2,LOC108263653
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23071308 ~ 23101134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941706.2
GGGACACTGATAAAGGCTTCGTCCCGAAAAGCAGAAGAAGCCTCCGTGTAGTATTCACAATCTTACCCCAACTGCATTGTGACGTAGGCTGCTAGTTAGCGGGGTagtgtgcggtttgggacggaGCCAGAGGGGCTGGCTGGCCACCTTTGCTTCTGATTAACAGCAGGAAAAGGCACAGAAAAGCACCACTTCAGACCCATTCGCTGGAGTAATAGTCTCAGTTCTAGTTAGTGCAGTGGCCGTTCATTTTGTTGTAAAGCTGAATATTTCCAGGTAATGGATCAGCTGGAATAAAGTCGGGGTGTCTAAAGCAGTGGTTTGAGATTATAGTGGAGTCCCGCTTCTGTACTAAACAGCAGGTTAagcagtgtagtgtgtgctgtagtgtgtgctGTAGTGTGGAAAGTACAGTGAGGGGTTTGGACGCAGTCTGTAAGCCGTTGAGCCTGCAGTCGAACGGGGTGCGCTGTGACGTCATCACTTCCGCCCTGCGCgcgctgtgtgctgtgtgcctGCTCGCCTTCTCTGCTGCACAATCCAACATGGAGTAATGAGAGATGGGGCTCGTACGGGGCCACCCTCAGCAACATCAACCGCGCATTTAGCACCACAGCCTGTCCGGAATCCATGCAAATGCTCCTTACGGGAAAGAATAACCAGGGCTTATTCACTCGCGGCTGCGGATTTGGCGTCCTTCACCACTTTCATCAGCAACTGGTTAGCTccggaggaaaaaaagagagacgaAAAGCCATCAGGAACGGAGGGACGAAGAggagaacaaaaacaaaccgAATACGAAAAGGGCTAACCGAGTGACAGTAGTAGTGCAGTGACATGTGAGGGATTTATTTTGGGGGAAAGGGTGGCAAGAAACAATGACGAGCGAAAAGAGTGCACCCGCTGTGGGATTTTGTGCTAGGTGAAACGAGAAAATGATTGAAGAAACACACCCAAACGATGACAGTTACATCGTACGCGTCAAAGCGGTGGTAATGACCCGGGATGACTCGAGTGGGGGTTGGTTAGCACAGGAGGGTGGAGGGCTCAGCCGAGTCGGTGTCTGCAAGGTGGCACCCGCTGAGCTGAGCGGCCACAGCGACTTCCTCATCCATGGAGAGCGCCTCAAAGACAAGCAGGTGGTCCTGGAATGCTTTGTGAGGAAAGATCTTATCTACACCAAGGCCACGCCCACGTTTCATCACTGGAAGGTTGACAACAAAAAGTGTGGCCTCACGTTCCAGAGTCCTGCTGATGCCCGCGCTTTTGACCGAGGGGTACGGAAAGCCCTGGAGGACATAACAGAAGGTTCCACAACTTCCTCTTCAACACTCCAGAATGAAGCTGAACTAGGAGACGACGATGTTTTCACAACCGCCACTGACAGCTCGTCCAACTCATCCCAGAAAAAGGAGCAGGCCATGCAGCCACTGACCACCTCCACCTTCTATGAACCACACCGGCATCACCATCACTACATTCTGGGTCACTTCCATGAGCAGTACAGGACCTCAGAGCGCTACTTTCTGGACCAGGCAGCACCCAGGTTGGCACGGCGTGTCAGCTTCCtagatgaagaggaggaggttgTGCGTATAAACCCACGTGAGCGTGCTTGGCTCTCAGGCTATGAGGACTACCGGCATGCAGCAGCGCGTGCTCAGGGTCTCGACTCTTACGTGCACTTCGCCAAGGGCGATGCACCAGCCAAGCATGACTACAGCTATCCGTATGCACCGGGGTCAGAGCTGAGCAAGGGCCCTCGCCGAGGCTCTGGGGGCGGAGCTGTGGtttctcagccaatcagcttcaaacacaaggaggatgaggaagagggtTTGGGTGAGCGGCGACATTGCGTCTACTGCGGCGTTTATTTCCGGCATGAGGAGAATGGCCGAGGCCGCTGCCCTGATGCTCCAGACCCGGCCCGTGTGTGCATCCGACGCTTCAGCTGCATGTGGTGTGCAGATAGCCTGCTCTACCACTGCATGTCGGATCCGGAGGGCGATTACTCTGATCCCTGCTCATGCGACACGGCCGACGAACGTTTCTGCCTGCGCTGGCTTGCCCTACTCGGCCTTGCACTGCTCGCTCCCTGCCTCTGCTGCTACCCGCCGCTGCACGCCTGTCACCGATGTGCCGTGGCCTGTGGCTGCTGTGGTGGGAAGCACAAGGCCGCTGCATGACCCCTGACACTGATCCCGCCCAATATATCACATACTGAACGCACCCAGATAAATGGCGGCATTGAGGAAGGCAACAGGAGGCAGGAAGAAAGTTCATCGTGTCTTTTCAGTTTCCTTTTTAGTCTGTCTCAATTCCTACtccagacagacaaaaagaacaaaaatggtGCATTTAACTGGCttgaatattttttcttttttatataaatatgaatatatattatattatataaatgtgtgcgtgcgtgtgtgtatgtgcgttcCTGTGTATGTttccttttctcattttctgGACGTTCTCTTCAGTTCCTGGTGAAAAAAAtggctcttgttttttttcaggtggCCCTTTTGGAGCCAACTTGTTAAGCATTACTTATGCAGgtactttatatttttacactgatttttaGTTTCAAGAACttgaattctttatttttaattgtgcGTGCACTCGATTGCAGAATCAGTTGTTTGATTTTGGGTTTGTTTGCCATGGCCAGCTAACTGAGGTGTAATCTATCTGAAACCCTCAAAACTTACTAAATAATAACAGTGAGATTAGCTTGAGACACTAAACCTGTAGTGAGGTTCACAGTGCGCGCTTGATTGGGactgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtaatagtgcaGAAGCCTGCATGTGTGTTGTAAAGGAATGAGAACATTGTATTACAGCATagtattgttgttattgtattTAAGCCAAATTTTACATAAGCTGCAGTGTGAGTatatgtaaatactgtatactcatatgtatatgtttaaaatTGATTATTATATCCACAACCACATTTGTGGACTTTTTGCTTTCTGTTGATTAGAATAGTGGATAAGGAGCTCTTTTAAATGACCATAATTGATATCCAAAGATTGTTTATTGggttttttgtcatatttattttcttagtCAATTGAATCACCAGCCAAAGGGAGAAGGAAATATGGACATAGAGTTTGGCTTTTGAACTAGAAGCCTGGTCATATGAGAGAGTAGAAGGAGCCCAGTTGGAACAGTGTATATTATGCTTGGAGTGAAATGCATGACGAGTATCTGTTTCCCCACTCCGACATGTGGcttttaacactttaaaattagtggaaaattttttttctttttctcgttTTCAAAACTGATCCTGCTCTATAGGAAAACTAAAAGAACAGGACACCTATTAGAGGGACATTTGCCAAAATGATCTCTGATGTTTCTCAAAGCCttaattttggttaaaaaaaaaaaaaaagtgatggcAATTTCATTGTGTCTGCCACGATGTTTACTCATAAGACAGACGCATCTTTGTGAGTTGTTTTAAAtcaagagaaagtgaagaatatttttgtaatatatcaAATATGATCACATCAAATgagcctttttttaattaagagaaTGTGTTTAAAGTGTAGAAGGACATAGTAGGGATAAATGGCATCGTACAATCTGTGAGGCAGCTCTGGTACGTGTGTATAGTCTGTCTCAGACATTATATCCTGCTCCAACCCGTGAATGACATTGCAATCATTCAGTCACTGTTCATAAAAATCATGCAATGAAGAAATACTATCTGGTTTAGCTAGTAAAGCTGTATGTGCACGATTCGGTCTTTGAATGTACATGGCTATTACTAATGTCTGTGTTTAAACCATAACATTCACCCTGCTCATGGGAGCTACAGTCATATTAGTACATTACAAACACAGCTGTGTCTCACTGAAAATGTAGAATGTCTGTCAGTACATGGGAGGTTAGGGAGGAGTGTCACTGTATCCTTCATCCACAGCACATCCTTTTTGGCTCTCCATCAGCTTTGGCAATACTGAATAAACATCATCCTCTTCACTAAGAGCCCGGGATACCTGtggtttaaaacaaaacaaaacaaaaaaaaagaagtctgtACATCTGTCACAGTGCAGTCTTGCtactacacacattttacatgtttaaaaagtgCCTGAAGCATATTGTTAATCTGTCTCCTTGTATACTAaaagaaagattaaataaaCCCTATTGTATtgattagttttgttttttacaataAGAATTTTTACCTctgtaaaaagcaaaaaaaaaaaaaaaaaaaaaactatatcaAGTGTatgatgtacatttttatttctatttttttttattgtttctaacTTGTATGTTCAATGAAGCTCTTTGCTTTTGAgaggacaaaagaaagaaagtacttTGTAAATACAGGTAGATCATGTCAGAACTACCAGAAGTGTGGCCTGGCCAGTAAGTAGTTCTACATGTGTGTCCTAGCtcccaataaaaataaaacagaaattcaCTTA

Function

symbol description
spred2 Enables protein kinase binding activity. Involved in negative regulation of peptidyl-threonine phosphorylation. Predicted to be located in cytoplasmic vesicle.

NR:

description
PREDICTED: sprouty-related, EVH1 domain-containing protein 2-like, partial

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K04703 SPRED; sprouty-related, EVH1 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941706.2 True 4535 mRNA 0.45 6 23071308 23101134

Neighbor

gene id symbol gene type direction distance location
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding upstream 1664 23052228 ~ 23069644 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding upstream 84511 22981602 ~ 22986797 (+)
si:zfos-1056e6.1 LOC108263310 coding upstream 143758 22924521 ~ 22927550 (+)
LOC113540824 syndig1,LOC107717853 coding upstream 180439 22870890 ~ 22890869 (+)
mea1 mea1 coding upstream 325504 22742727 ~ 22745804 (+)
LOC113545030 NA coding downstream 13051 23114185 ~ 23115039 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding downstream 118987 23220121 ~ 23276316 (+)
si:dkey-78p8.1 NA coding downstream 326883 23428017 ~ 23450991 (+)
lrrfip2 lrrfip2,LOC107679173 coding downstream 767017 23868151 ~ 23999400 (+)
LOC117596572 NA coding downstream 1032489 24133623 ~ 24136847 (+)
G51422 NA non-coding upstream 595 23070321 ~ 23070713 (+)
G51358 NA non-coding upstream 112688 22958400 ~ 22958620 (+)
LOC117596907 NA non-coding upstream 334641 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 534871 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 621799 22424419 ~ 22449509 (+)
G51501 NA non-coding downstream 105981 23207115 ~ 23275341 (+)
G51511 NA non-coding downstream 176789 23277923 ~ 23361488 (+)
G51564 NA non-coding downstream 355875 23457009 ~ 23457309 (+)
G51561 NA non-coding downstream 358479 23459613 ~ 23460865 (+)
G51565 NA non-coding downstream 363119 23464253 ~ 23465415 (+)
LOC113540861 LOC108263311 other upstream 157756 22911144 ~ 22913552 (+)
G51271 znf318 other upstream 284803 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 518556 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 1047497 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1952344 21025733 ~ 21118964 (+)
G51562 NA other downstream 353294 23454428 ~ 23455549 (+)
G51749 NA other downstream 595898 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 692546 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 954020 24055154 ~ 24057898 (+)
b3galnt2 b3galnt2 other downstream 1249050 24350184 ~ 24402454 (+)

Expression


Co-expression Network