actr2b (actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543)


Basic Information

Item Value
gene id actr2b
gene name actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23052228 ~ 23069644 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941717.2
ATGGACAGCCAGGGCAGGAAAGTGGTGGTTTGTGATAACGGAACTGGGTTTGTGAAGTGTGGCTATGCAGGTTCCAACTTTCCAGAGCACATCTTCCCTGCGCTGGTGGGCAGGCCTATCATTCGCTCCACAGCTAAAGTTGGCAACATTGAGATTAAGGACCTGATGGTGGGTGATGAGGCGAGTGAGCTACGCTCCATGCTGGAGGTGAACTACCCGATGGAGAATGGCATTGTCAGGAATTGGGATGACATGAAGCACCTGTGGGACTACACTTTTGGTCCAGAGAAACTAAACATTGACTCACGCAACTGCAAGATTCTCCTCACCGAGCCCCCCATGAATCCCACCAAAAACCGTGAGAAGATCATCGAGGTTATGTTTGAGACGTATCAGTTCTCAGGGGTTTATATTGCCATTCAGGCTGTTCTCACATTGTATGCTCAAGGTCTATTAACGGGAGTCGTGGTGGATTCAGGTGATGGTGTGACCCACATTTGCCCTGTATACGAAGGCTTCTCTCTTCCTCATTTAACTCGCAGGCTGGACATAGCAGGGAGAGACATCACTCGATATCTTATAAAGctgctgctgctgcgagGATACGCTTTCAACCACTCAGCAGATTTTGAGACCGTGCGCATGATGAAGGAGAAACTCTGTTATGTAGGATACAATATCGAGCAGGAGCAGAAGCTTGCTTTGGAGACTACTGTACTAGTGGAATCCTACACGcTCCCTGATGGCAGAGTGATAAAGGTCGGAGGGGAGAGGTTTGAGGCACCTGAGGCTCTTTTCCAGCCTCATCTGATTAACGTGGAGGGAGTGGGAGTGGCTGAGCTGCTCTTCAACACCATTCAGGCAGCAGACATCGACACCAGGGCTGAGTTCTACAAACACATTGTTCTCTCAGGCGGTTCTACCATGTATCCAGGCCTGCCCTCCCGACTGGAGAGGGAACTCAAGCAGCTCTATCTAGAGCGGGTGCTTAAAGGGGATGTGGACAAGCTCTCTAAATTCAAGATCCGGATTGAAGATCCTCCACGGCGCAAACACATGGTGTTCCTGGGTGGAGCTGTGCTGGCTGACATCATGAAGGACAAGGACAACTTCTGGCTGACGAGGGAGGAGTATCAGGAGAAGGGTGTGCGCGTGCTTGAGAAGCTCGGCGTCACAGTCAGATAAACTGTTAGCGTCTGCTAAACCCTCTGCGTCCTCTCCACTCTCCCACGTATAGGATATCCAGAGCATCTGTCCAGCTGTGTGTCGCTAGAGCTCTCACCTCCTGCATTCTGCTACTCGTGCCACTGAGTCACATGATCACTTTTGGGAAGGACAGACCGGGAGGTGTATTAGGGCTGCTGGGGAGGGAGGTGAGGAGTTTGGCATCCATATTTTTGGGCTCTCTGTTATTATCCTTATGCACCAGATCGTAAAGTTGTCACAAGCAGTCATTTCAACTTATGTCAGTGTTTGTCTCGTGCAAAACAAAGCC

Function

symbol description
actr2 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in positive regulation of cellular component biogenesis and positive regulation of nucleobase-containing compound metabolic process. Acts upstream of or within cilium assembly. Located in cytoplasm; nucleus; and site of double-strand break. Part of Arp2/3 protein complex. Biomarker of colorectal carcinoma.

NR:

description
PREDICTED: actin-related protein 2-A

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K17260 ACTR2, ARP2; actin-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941717.2 True 1495 mRNA 0.51 9 23052228 23069644

Neighbor

gene id symbol gene type direction distance location
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding upstream 65431 22981602 ~ 22986797 (+)
si:zfos-1056e6.1 LOC108263310 coding upstream 124678 22924521 ~ 22927550 (+)
LOC113540824 syndig1,LOC107717853 coding upstream 161359 22870890 ~ 22890869 (+)
mea1 mea1 coding upstream 306424 22742727 ~ 22745804 (+)
dlk2 dlk2 coding upstream 331340 22696395 ~ 22720888 (+)
spred2b spred2,LOC108263653 coding downstream 1664 23071308 ~ 23101134 (+)
LOC113545030 NA coding downstream 44541 23114185 ~ 23115039 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding downstream 150477 23220121 ~ 23276316 (+)
si:dkey-78p8.1 NA coding downstream 358373 23428017 ~ 23450991 (+)
lrrfip2 lrrfip2,LOC107679173 coding downstream 798507 23868151 ~ 23999400 (+)
G51358 NA non-coding upstream 93608 22958400 ~ 22958620 (+)
LOC117596907 NA non-coding upstream 315561 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 515791 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 602719 22424419 ~ 22449509 (+)
G50938 NA non-coding upstream 764126 22285438 ~ 22288102 (+)
G51422 NA non-coding downstream 677 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 3312 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 5086 23074730 ~ 23076471 (+)
G51501 NA non-coding downstream 137471 23207115 ~ 23275341 (+)
G51511 NA non-coding downstream 208279 23277923 ~ 23361488 (+)
LOC113540861 LOC108263311 other upstream 138676 22911144 ~ 22913552 (+)
G51271 znf318 other upstream 265723 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 499476 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 1028417 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1933264 21025733 ~ 21118964 (+)
G51562 NA other downstream 384784 23454428 ~ 23455549 (+)
G51749 NA other downstream 627388 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 724036 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 985510 24055154 ~ 24057898 (+)
b3galnt2 b3galnt2 other downstream 1280540 24350184 ~ 24402454 (+)

Expression


Co-expression Network