bcl11aa (bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449)


Basic Information

Item Value
gene id bcl11aa
gene name bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13588316 ~ 13633478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941819.2
TTCAAGTTCGCAGGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGgcttttgccatttttttcatctctctctctctctctctttctccctctctctctctctcttttcaaaaAAAGCCATGACGGCTATCCCACAATCCATCTTCCCCGCGCCATCTTTGtattatttctaatttattttggaTGTCAAAGGCATTGATGAAGATATTTTCTCTGGAGTCTCCCCGCTAACCCGGCTCTCCCGATGTGAACCGAGCTGAAAGCCGCCGCCAACCACCATGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGATTTTTCGCCCGAGCCCCTGTCATCCGTGGTCTCGGAGGAAAGGCAGGAACAGCACGGGCTGGTACAGGTCTCTCCGGAAGGGGACCAGGACCTGCTTACCTGCGGCCAGTGTCAGATGAACTTCCCTTTGGGGGATATCCTCATTTTTATTGAGCACAAAAGGAAGCAATGCAATGGCACCATGTGCGTGGACAAGACAGTGGATAAGCCCCCTTCTCCCTCGCATGGCGAGCTGAGGAGAGCGTCCAATCCCGTGGAGGTGGGCGTCCAGGTCACGCCGGAGGACGACGATTGCTTGTCAACGTCTTCTCGAGGAATCTGTCCCAAACAGGAACACATAACAGGTAAAGATGAGCCCAGCAGCTACACCTGTACAACCTGTAAGCAACCATTCAACAGCGCCTGGTTCCTGCTGCAGCATGCCCAGAACACTCATGGCTTCCGCATCTACCTGGAGAGTGAACGTGGGAGTCCCCTCACACCTCGAGTTGGTGCCCCTTCTGGGATGGGTGCCGATCATGCCTCCCAACCTCCCTTACATGGCATTCACCTGCCTGAAGGCAGCCCCTTCAATTTGCTCCGGATTCCCAACTCTGGACGCGATGGTCCCCCTCTGCGGGAGGGACGTTTTCCGCCTACCCCTCCACTCTTTAGCCCACCACCCCGCCATCACCTGGACCCCCATCGCATGGAGCACCTGAGCCCAGAGGAGTTGGCCCTAGCCACCCACCACCCGAGTGCCTTTGACAGGGTGCTGCGCCTCAACCCCATGCCCCTGGATCCCCCTGCTATGGACTTTTCTCGCAGGCTCAGAGAGCTGGCTGGCAACACCTCAGGGTCAACTCCCCCCCTCTCACCCAACCGGCCCAGCCCCATGCAAAGGCTTCTGCAACCATTCCAATCAGGAGCCAAGCCACCGTTCCTGTCCACCCCTCCCCTTCCATCAATGCAGTCCCCCTCTGGCTCCCAATCTACTCCAACACCACTGCCCCAGCAGCCCAACACACCCATGAAGTCCAAGGCCTGCGAATTCTGTGGGAAAACCTTCAAGTTCCAGAGTAATCTTATTGTGCATAGGCGCAGCCATACAGGCGAGAAACCCTATAAGTGCCACCTCTGTGACCATGCCTGCACCCAGGCAAGCAAACTGAAACGGCACATGaagacacacatgcagaaaaCCTCTCCCACAACAGTCAAATCTGATGATGGCCTCTCCACAGCAAGTTCCCCTGAACCTGGGACCAGTGAACTAGTGGGGAGTGCCAGTAATGCCCTCAAGTCTGTGGTAGCCAAGttcaaaagtgaaaatgacCGTCTGATTCCAGAgaatggagaagaagaagaggaagaggaagaagaagaagaggaggaggaagaagaggaagaggaggaggaagaaggagaggaagaagaagagctggAACGAGAAGGGACTCGTAACAACTTCCATTTTGGCTTGAACCTGGAAGCCGCAAGACACCATGAAAACAACGGTGGGCGCCTAGGTGTGGCTGAGGATGGAATCCCACGCTCCTTACCTGAGGTGATGCAGGGCATGGGCCTGGCAGCCAGCATGCAGCACTACAGTGAGGCCTTCCACCAACATAAGCGAGGTGTGCTCAACTCTGACAGCAATGCACACAGAGACATCTGTGATGAGGACTCAGCAATGGAGTCAGACCGTGTGCAAGAAGGCTCAACTATCAATGGCCGGGGCTCATCTCCCAATGAGTCGGCCTCTGTAGGCCTGTCCAAGAAGCTTCTTTTGGGCAGCCCCAGTTCCCTCAGCCCTCTGTCCAAACGCATCAAGCTGGAGAAGGACTTTGACCTTCCCACGCCAACCATCCCCAACACTGAGAATGTTTATTCCCAGTGGCTGGCTGGCTATGCTGCCTCACGGCAGCTCAAAGACCCCTTTTTGAATTTTGGGGATTCCAGACAATCGCCTTTTGCCTCATCTTCAGAGCACTCCTCAGAAAATGGCAGCCTGCGCTTCTCTACACCACCGGGAGAACTTGACGGTGGTGTCTCTGGCCGCAGTGGTACAGGTAGTGGGGGAAGCACGCCACACCTCGGTCCTGGCCGGCCTAGCTCAAAAGATGGCAGACGTAGTGATACCTGTGAATTCTGTGGCAAAGTGTTTAAAAACTGCAGCAACCTGACAGTGCATCGGCGTAGTCACACGGGCGAGCGACCCTACAAGTGTGAACTCTGCAACTATGCCTGTGCCCAAAGCAGCAAGCTCACACGGCACATGAAAACACATGGGCAGGTGGGAAAGGACGTTTACAAATGTGAAATTTGTCAGATGCCTTTCAGTGTGTACAGCACCCTGgagaaacacatgaaaaaatgGCACAGTGACCGCGCCTTGAACAACGAAATTAAAACTGAATAGTGATGGTGAGTGGAGGCACACTTGCAGCAAACCTCCTCAAATCCCACCCTTGTAGATTTTCCCTGTTTGGCTAGTCCAGTGGAAGCTAAGACAACGTGCTTGGCACCACCAGCACACCCTTCTTCATTTACCGTTGAATGCATGTTCTGTATCGGGGCAATACTATTGCATTGACGCAAACTTCGAGCCTTTCTCTTGTGCAATAATTtacatgttgtgtattttttctttttctttcccttttttgaTAATTAGACAGCATGCATGATATGTTTtggctattttaaaaaaaagaattgtccCTGGCTGGTTAGTTGTTGAGTAAATGTGTTGCTGTtttcttgttctgttttttattcaaaaaatgagaagagaaaaaaagcaaccATGCTGCATACATTCTGTAAAACATATCATGTACAGTTTTGTGTTGTAACATGGAGGACAACCGTTTATTGCTTAACCCTCTTCGGAGGAGCTGGGAATCGCACTTAAACTAATCTTTCAAAAAGATATTCTGTCCACATAgggttaaaatatttaattggcCCCTATTATGGAACATAAAGTATTGACAGCCTttgaatttctttaaaaaaaaaataaggagtCATCAAAATTTGAATTTGTACTATCATTtggtaaaacaaacaaaaaagagtgCCTTGGATCTTGAAACTGCATTGGTTAATCTTCTTATCTGCTCTAAGCTTGGAATCTCAGCCAGATATTGGAAATGGATTTATTTGATTCACTTGAGGTTCTTGCATCAAGTACCTGACTTTGACACTGTCTACATGGAAATGATGATAATCAAAAAGCTAAAAGCTAATTTGTAGTTAATCATCATTAGCTACCTATAACACATGCACTCTTCaattatagtatttttattgttcatgGTACATCCAGTATTGTGTTGGATTGAACCATGTTTACTCTCCAGTTAAGGGTACTGTCCTCGGTGGTACAGGTTTTTAATCCACAGTCATAAGCTCTCTCATAGTTTGTGAAGGTTCTGTTCTCTGTAGCAAGCAGTCTAAAGCGTGTATCGGGTTGTACGAACATCCACTGCATAGGTACACTTTGCAGCCTATAATATGTCACGCAgtgtttttgaaaataattttgaagAATATTTTCATCTGTCAGTGATGATTAACTATGAATTGCTTACAGATATGAATCATGGTCCCCAAACAAATTTCTCTAGCACTGACTGGAGTACTTATGCCTGTGTTCCTTAAATTATAAAGAGGGGAGAGGGAATAATCAGGAAGCATGACTTTTGCGTGAAATATATGTTTGGGAGGACATCTACCCACTTTTGACAACCATGTTTTCAGTCTTTAGATAGCACTTGACACTCGGCCCCTTCAGTCTGTGTCTGACGCTCTGATTGGTGGTGTAGTGGTTGAGTATAAATTACGACTGCTTGCATAGACAGTAAAGTGCACTGTTAAAGTTTCCCAGTTTACAGGTATTAACATGAGGGAAAACTtcttttaagtttaaaaaatgtgtcattgttGAACATAATGAAGCCAACTCTTTACTCAGTCCAGCACCCACTTATTGAAAGTCCAACTCCAATATAATGTATGAGCTTCGGGGCATAGACCTCCTGTCAAACAATGGACTATGGAAACTTGCTGCTTTCACTgcaagaagatttttttttgtacaaaaacatttttttaaaaatatgaatataaagcatttttaaataattagcaAATCATTTTTTAGGGAACCTGTATTTAAGTTTGATGttgtttctctttcctctttgtCTTGGTGGTGTTCAAGAATTGATCACAATATATatagaatgggaaaaaaaatctgtgattttctgtttatttcctttttttctccaccgTGGCTCTTCATAGCTCTTCAGGTCAAACATAACTTGCATTGGGGAAAGGTTtaagattatatataaatatataatagagAACTTAAATATAGGAAAATGCACACTCATGGTCAATTCCTATgctaaaacacatttatgaCCTACTTTCTTCTGTATTTCTAGAATGGTATTTGAATTAAATGTTCACCTAGTGTAGGCACTATAGTATTTATATTGAGGCTTGTATTTTTAACTGTTGCTTGTTCTCTCAAAAGGTATTATTGTACCTTTTTTGGTAGtggaaaaaacaacaagctGCCAcggtatatttttttaatttggcagGATAATATAGTACGaattatttgtatgtttaaaaattacattaaaaaatcaataaaaaaactaaagtaTGTGGCATTGTATAAAGGAGGCCATCTGATGGTTTCCCTGAGGAGTCTTTTGAGAATGTCCACACTAGCTAAAACAGGTGGTTGTACATATCTTTTTTCGGTTCTTTTTTTAGACTCTCCTCTTCTGCTGCCATTCTGTATGCAGTAATGCAAGCTGATGTTGGGTTCTTCTGTAGTGTGCTTCTCTGTCTTCTCACCTGACTACATTCCAGTATCTTAAAGAGAACAAATGTCATATGCAGTAAATTATCAGTACAGAAatgaacatcatttaaataaatgaattaaaaataatcaatgttttgCAGGTTTTGTTTCATTGCCAAATACTATGGTGCTTTATATTTAGATTGGGATGACTTTCGTATGCaaagcatatttaaaaatgaaatggaacTAATGGAAAAGCCCGCTTGAGTTCATACTTTTTTGTAAATGGCAATGCGAAATATTTTGTTATCAGCCTTTTCTATTCCTGTTCTGAAAGCTGTTGTTgtaacttgaacttgaactttaTCTTTTACAATGGGAGtcactatttattattacttaaatgCTCTGTTCAAAACAGAGACATGGAATggatcttttttgttttctttttttttttttttttttttaatttttgttattgttttcctttaaaaatgaccaaaggtcatttacaacttttgcttttttgttgtatttgtttctgGTCTATGTTGAGTTTTATTGGAGAAACCACTGTCTGTGTTTTCTGGCAGTTGTCTGCATTATCCTGTTCACACACCCATTTTGTCCCTTTATTGAAaccaattaataaaaaaaaatcaaagta

Function

symbol description
bcl11aa Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Orthologous to human BCL11A (BAF chromatin remodeling complex subunit BCL11A).
bcl11a Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Involved in negative regulation of transcription by RNA polymerase II and regulation of neuron projection development. Located in nucleoplasm. Implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Biomarker of lung non-small cell carcinoma.

NR:

description
B-cell lymphoma/leukemia 11A

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22045 BCL11A; B-cell lymphoma/leukemia 11A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941819.2 True 5826 mRNA 0.44 3 13588316 13633478

Neighbor

gene id symbol gene type direction distance location
sec23ip sec23ip,LOC107655440 coding upstream 158056 13419948 ~ 13430260 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 183641 13385486 ~ 13404675 (+)
bag3 bag3 coding upstream 204973 13376724 ~ 13383343 (+)
pkd2l1 LOC108263119 coding upstream 222249 13359076 ~ 13366067 (+)
atoh7 atoh7 coding upstream 231884 13353569 ~ 13356432 (+)
fancl fancl,LOC107585345 coding downstream 402160 14035638 ~ 14056463 (+)
soul2 NA coding downstream 560356 14193834 ~ 14197074 (+)
si:dkey-187a12.4 LOC108263835 coding downstream 655904 14289382 ~ 14292863 (+)
rin2 rin2,LOC105893488 coding downstream 662856 14296334 ~ 14328299 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding downstream 698014 14331492 ~ 14341288 (+)
G45640 NA non-coding upstream 212317 13375799 ~ 13375999 (+)
G45594 NA non-coding upstream 275095 13312994 ~ 13313221 (+)
G45592 NA non-coding upstream 276236 13311677 ~ 13312080 (+)
G45508 NA non-coding upstream 492435 13095671 ~ 13095881 (+)
G45473 NA non-coding upstream 535787 13052240 ~ 13052529 (+)
LOC113545747 NA non-coding downstream 10642 13644120 ~ 13645338 (+)
LOC117596881 NA non-coding downstream 255801 13889279 ~ 13889849 (+)
G45875 NA non-coding downstream 260664 13894142 ~ 13896535 (+)
G46175 NA non-coding downstream 549513 14182991 ~ 14183193 (+)
G46176 NA non-coding downstream 549959 14183437 ~ 14183646 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 87266 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 553966 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 582993 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 651014 12929559 ~ 12937302 (+)
LOC117596823 NA other upstream 945012 12639317 ~ 12643304 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other downstream 579891 14213369 ~ 14286542 (+)
cgas NA other downstream 727889 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 1339090 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 2159928 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 2437236 16070714 ~ 16075650 (+)

Expression


Co-expression Network