chchd1 (chchd1)


Basic Information

Item Value
gene id chchd1
gene name chchd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10513951 ~ 10516957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941836.2
ATTTTTGCGGCATATTTACGACAGTGCCGTTAAACGTAACCATAACAACCGTGTGAGGCTCGTCTTCCGGCAAAAATGGCGACCTTGAAATGGATGTCAGAGACCAGGTTTAGTTAGAAATAATGGCGATGCAGAGCGGATGTGTGATTCAGGAGAAGGTGGCCAGGTTGTTGAGTAAGCAGCATGGAAAGCCTGTCCTCAAACCCAACAAGCCTCTGGCCCTTAAAGACGAAGTCGCCAACCGCAAGCCGAAAAAAGGAGAGGCCTCCTGTGTGACAGAGATGGCATTAGTGATGGCTTGCTGGAAGCAGAATGACTTCAACACCAAACTCTGCTCTAATGAGCTCACCGTGTTCTACAGATGCATAGAGAAAGCACAGGCAGAGGCACGCGACCGAGCAAAGCAACAAACCCTTTCCCAGGGAGGACGGCTTTTACCAAGACAGGCCACCAAGCTATTGAAGCGGTACCCCAATTTGTGAGAGACTGACACAGGCAGCGATTTGTGAGAGAATGACACGGGCATGAATCAACAAAccggactgagagagagagagagagagagagagagagagagagagacacacgtTCAGTGCAGTGGTTTTGGGTGTggcctttaaacacacacaactcattTGCTACTTCAAAGCTTTTGGTTTTGTATttaatcacatcatcatcagcagcagatCCTGGCAAAGTAAAGGAGCTGCCTGTACAGGATGCAttctaattatttaattgaGTAGATCTCTCTAAATCACCATGTGAAAACAGGAATAAAGCAAATCACACTGTCATctctctgattaaaaaaagaaacagctcaCACTGTATGATGTTTGAAAGATTATTTGCTTAAATGCTTTTGAAATGttattgttgatgttgatgtcaTAAAATGATTTCCCTAACAACTTAAATATCATTGatttgtgtaactgttgttctgTCCTTTTATCACAGCTGCTAAATTACTGGTTATCCTGCAAATCAGTTTAGACAATAATCTTTTGCTTTGTTCCATTCTCATCTGTGTGTTCTGTGGAAACAGAGGTCTGGTAGGCTACACTTGGTGGATAACGTTACATTCCAGGCCATAAAGCTATCAGCTGTAGCCCTAGAGACTGGCGATGCTGATTTAATGACTTGAGTGTTGTTTATATTTTCCATTACCCATTTGTGCTCTTGAATATAGCAACTCATAGCAATATAGCAAACAACTTAATATGGTGA
>XM_034302507.1
CCGTGTGAGGCTCGTCTTCCGGCAAAAATGGCGACCTTGAAATGGATGTCAGAGACCAGGTTTAGGTGATAGCTAAATTAGATAAAGTTGTTCGATTTGCCGTgcatatatatttctttctgtTGTGATACAGGAAACTGTGACTTATGTTAGTTGTTACTGTGTAGCAGTTAGAAATAATGGCGATGCAGAGCGGATGTGTGATTCAGGAGAAGGTGGCCAGGTTGTTGAGTAAGCAGCATGGAAAGCCTGTCCTCAAACCCAACAAGCCTCTGGCCCTTAAAGACGAAGTCGCCAACCGCAAGCCGAAAAAAGGAGAGGCCTCCTGTGTGACAGAGATGGCATTAGTGATGGCTTGCTGGAAGCAGAATGACTTCAACACCAAACTCTGCTCTAATGAGCTCACCGTGTTCTACAGATGCATAGAGAAAGCACAGGCAGAGGCACGCGACCGAGCAAAGCAACAAACCCTTTCCCAGGGAGGACGGCTTTTACCAAGACAGGCCACCAAGCTATTGAAGCGGTACCCCAATTTGTGAGAGACTGACACAGGCAGCGATTTGTGAGAGAATGACACGGGCATGAATCAACAAAccggactgagagagagagagagagagagagagagagagagagagacacacgtTCAGTGCAGTGGTTTTGGGTGTggcctttaaacacacacaactcattTGCTACTTCAAAGCTTTTGGTTTTGTATttaatcacatcatcatcagcagcagatCCTGGCAAAGTAAAGGAGCTGCCTGTACAGGATGCAttctaattatttaattgaGTAGATCTCTCTAAATCACCATGTGAAAACAGGAATAAAGCAAATCACACTGTCATctctctgattaaaaaaagaaacagctcaCACTGTATGATGTTTGAAAGATTATTTGCTTAAATGCTTTTGAAATGttattgttgatgttgatgtcaTAAAATGATTTCCCTAACAACTTAAATATCATTGatttgtgtaactgttgttctgTCCTTTTATCACAGCTGCTAAATTACTGGTTATCCTGCAAATCAGTTTAGACAATAATCTTTTGCTTTGTTCCATTCTCATCTGTGTGTTCTGTGGAAACAGAGGTCTGGTAGGCTACACTTGGTGGATAACGTTACATTCCAGGCCATAAAGCTATCAGCTGTAGCCCTAGAGACTGGCGATGCTGATTTAATGACTTGAGTGTTGTTTATATTTTCCATTACCCATTTGTGCTCTTGAATATAGCAACTCATAGCAATATAGCAAACAACTTAATATGGTGA

Function

symbol description
chchd1 Predicted to act upstream of or within mitochondrial translation. Predicted to be located in mitochondrial ribosome. Predicted to be active in mitochondrion and nucleoplasm. Orthologous to human CHCHD1 (coiled-coil-helix-coiled-coil-helix domain containing 1).

NR:

description
coiled-coil-helix-coiled-coil-helix domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941836.2 False 1236 mRNA 0.43 4 10513951 10516957
XM_034302507.1 True 1293 mRNA 0.42 3 10513951 10516909

Neighbor

gene id symbol gene type direction distance location
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding downstream 2104 10492837 ~ 10511847 (-)
zswim8 zswim8,LOC107713895,LOC107743573 coding downstream 25144 10449319 ~ 10488807 (-)
ndst2a ndst2,LOC107666426,LOC107726987,LOC107743572 coding downstream 66224 10331733 ~ 10447727 (-)
si:dkey-174i8.1 LOC108262936,LOC108438205,LOC107568550,LOC107743623,LOC107568549,LOC107696867 coding downstream 183730 10323316 ~ 10330221 (-)
camk2g2 camk2g,camk2g2,LOC107726985,LOC107666428,LOC108410509,LOC107684098,LOC100707324,LOC106606853,LOC106576966 coding downstream 195756 10255625 ~ 10318195 (-)
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding upstream 40644 10557601 ~ 10562588 (-)
LOC113541130 NA coding upstream 50400 10567357 ~ 10568828 (-)
pbld LOC108261389,LOC108263388 coding upstream 70919 10587876 ~ 10593240 (-)
opn3 opn3,LOC107676370 coding upstream 90902 10607859 ~ 10615623 (-)
cdc42ep3 cdc42ep3 coding upstream 133496 10650453 ~ 10659241 (-)
G43987 NA non-coding downstream 197503 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 208869 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 248363 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 260013 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 271069 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 136757 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 156389 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 299715 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 405352 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 436548 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 352428 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 505390 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1285067 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1660157 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1730153 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1191657 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1493974 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1627883 12144840 ~ 12152522 (-)
nin nin other upstream 1918152 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 2007679 12524636 ~ 12534215 (-)

Expression


Co-expression Network