sparcl1 (LOC108262882)


Basic Information

Item Value
gene id sparcl1
gene name LOC108262882
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4463696 ~ 4473298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941951.2
TAGCAGGGTGAGAGATGAGCAGAGTTTAGCACAAGAGTCAAGTCTTCACACACTCTTCCTGCTGAAACACAACATCCCATTAATCCAGTGATCTGTTCATCTTTCTACAAGCTTCAGTTCCAGATATGGAGGTTGATCTTCTGGGCCTCTTCCTGTTGGCCTCAGCATTAACCGTCTCTATGCAAAGTACTCCTCATGAGAAGCAAGATTCTCTCTCCAGATGGTCACAAAATTCTGAGGAGAAGGATGATGAGTTCCCAAAGATAAATGAGGTTAATGATTCCATTTTGCCAACATTCTTCCCCTTCGAGGCTAGTAGTCCAGAACCAGGGGATGAGGATGTAAGCAAGGAGACGTCAAATGGTGGAGATGGAACAGATGAAGTATATTCAGTAAATTTGGAGATGTCTGATGGGAGGAGCATTCCTGTGCTGCTGAGTGAAGAGATGCTCGCTCAACTTATAAAGGATTCTGAGGAAGAGCAGCAAGATGTGgagaaagatgaagaagatAGTGATGAAGATGACATAGGAAAAGCAGTGGATACAAATGAGGAGAGTGTGGAGATAACACCGGAGTCTAAAAATGATGGAGAagaacagcaacagcagcaaaaagagaaagatgtgGAAGAAGAGGAGGTGGGGAGTAGCACAGACTTGGATATACCAGTAGATTTAGACTATGCTGTTGACAGAGTATCTACAGAAACTCAAAACACCAAGCTGGAAGAGAACAAACCTTTAACCTTTAGGTTTGGAGAGGAAGAGAATGGGGACAATGAACTTCCCACAGTCATGGAAGACTATGATACCCAGCCCGATCAAGATTATGAGGATCCCAAAGGACGCCAAGAAAAAACATTTGACCAAGCTATATCTACTGAAAATTTCCAAGATGAGCAGATCCTTCCAGATCCTGAGACTGACAAAAGCAAcacagatgaagatgaagatgaggagAGTATGGAGCTGACAGAAAAGAAACTCTCTgaggaaaaagagggagagaaggacACAAATGAAAGCCACGCAAAAGGAAACAGCAAGAAACAGATGAAGAGCAAGAGACTGAGAAAAGCACAGAGTGACCAGGCTTTGAGTGGTGAGGTGACCTCAGAGCTGTCTCAAAACCAAGAGCCTGAGAAAAAAGAGGCAGAAATCACACTCAACATGGTGCAGAGGAAGTGGGGGAAATGGGCTTCCCTACTGGGAATGAACCCTGTGCAGATCAGGGCTGCAGTGGAACTTTTCCCCAGAATCAGACCCACAGCTCGACCCAAATCCAGACCTGGAACTGATCCAGGACAGGAAGCTTCGGTCGACTCATGTGAGAACTTCCACTGTAAGCGAGGGAAGACATGCAAGCTGAACGATAAGAAGCAGCCCAGTTGTGTGTGTCAGGAACCTGCAGACTGTCCTCCAAGTCTCAGTGAGTTTGACCATGTGTGTGGAACAGATAACCAGACCTATGACTCATCCTGTCAGCTTTTTGCCATCAAGTGCAGCCTTGAGGGCAGCAAGAAAGGTCACAGACTACATCTGGACTACACCGGCTCCTGCAAATTTATTCCACCATGTCTGAAGACAGAGCTGATACATTTTCCACTGCGCATGAGAGACTGGCTGAAGAATGTGCTGCTGCAGCTCTATGAACAAGACTTCCTTACACCCAAGCAGAGATCCAGAGTTCAGAAGATGTATGAGAATGAGAGGCGTCTCCATGCGGGCCATCACCCTGTCGAGCTCTTGGCTCGGGACTTTGAGAAGAATTACAACATGTACATATATCCAGTGCATTGGCAGTTTGCACAAATGGACCAACATCCATCAGACAGGTTCCTGTCTCACTCAGAGCTTGCTCCTCTGCGTGCCCCTCTGGTTCCTATGGAGCACTGCACTTCAGTTTTTTTCCATGAGTGTGATGCAGACAAGGACAAGCTGCTCTCTTTCAGGGAGTGGTGCCAGTGTTTTGGCATCAAGGATGAGGACATGGACACCAAGCTGCTGTTCTGAATGAAGTTGGTTGCCTTCAGACTGATACAGCTAGCAGAACGTCCTTCAGAGACGAGAAAGAAGACTCTtttgaaagagtgaaagagttaAAAAGTGAATACTCCGACTTTTTATGTCTCTAGTGGAAGGACAAGAATGTTTTGTCTCTGACTATGCGGTTGAAGGAAGCAGTTGTGTTGAATGTAGTTGCTCTAAAACTGATAGTAGAAGAAAAGCAGTCTGTTTGACAGtagttttttctattttaatatgGATAAAAGAGAAATGATGTCTTTTATATGCATTCCAACAGGGGAAAAGTTTACAACTCAGCAGCTAGTAAATAGGTGTGGTTTTAAATTGAGATGGTTTTGGGTTTTGAGCATTAAATTTAAAGATCTTTGAAGGGAAACAACCTATTGCAcccataaatgttataaaacagCACCCATAGAATCTGTTAAATGAACATATTCTGTTTCAAGATGATTTCATAAAGTAAATGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941951.2 True 2501 mRNA 0.44 11 4463696 4473298

Neighbor

gene id symbol gene type direction distance location
LOC113542300 NA coding downstream 167567 4293496 ~ 4296129 (-)
LOC117596921 NA coding downstream 174257 4284375 ~ 4289439 (-)
LOC113542293 NA coding downstream 189529 4259731 ~ 4274167 (-)
LOC113542265 NA coding downstream 214873 4229822 ~ 4248823 (-)
galntl6 galntl6,si:ch211-15e22.3,LOC107670789 coding downstream 374178 3877190 ~ 4089518 (-)
fam193a fam193a,LOC103156485 coding upstream 38403 4511701 ~ 4540623 (-)
arhgap10 arhgap10,LOC107742542 coding upstream 312475 4785773 ~ 4878809 (-)
ednraa ednra coding upstream 448490 4921788 ~ 4944595 (-)
pou4f2 pou4f2 coding upstream 605062 5078360 ~ 5081554 (-)
zgc:152968 LOC108262836 coding upstream 884243 5357541 ~ 5384816 (-)
G40522 NA non-coding downstream 622536 3792229 ~ 3841160 (-)
G40521 hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 non-coding downstream 622754 3838818 ~ 3840942 (-)
LOC113545372 NA non-coding downstream 625514 3819051 ~ 3838182 (-)
G40323 NA non-coding downstream 750863 3702221 ~ 3712833 (-)
G40316 NA non-coding downstream 789885 3673150 ~ 3673811 (-)
LOC117596430 NA non-coding upstream 15248 4488546 ~ 4496696 (-)
G40770 NA non-coding upstream 64761 4538059 ~ 4539526 (-)
G40936 NA non-coding upstream 192224 4665522 ~ 4665725 (-)
G40938 nr3c2 non-coding upstream 193908 4667206 ~ 4668993 (-)
G40962 nr3c2,LOC107550687,LOC107742541,LOC107670737 non-coding upstream 266086 4739384 ~ 4739711 (-)
trnah-gug_3 NA other downstream 1429143 3034482 ~ 3034553 (-)
trnah-gug_2 NA other downstream 1429759 3033866 ~ 3033937 (-)
trnae-uuc NA other downstream 1430893 3032732 ~ 3032803 (-)
tenm3 tenm3,LOC108434131 other downstream 1479493 2220147 ~ 2984203 (-)
G39720 NA other downstream 2289945 2173358 ~ 2173751 (-)
dclk2a LOC108263760,LOC108429594 other upstream 71841 4545139 ~ 4609450 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other upstream 420604 4893902 ~ 4906239 (-)
lsm6 lsm6 other upstream 730408 5203706 ~ 5227967 (-)
gab1 gab1 other upstream 1282719 5756017 ~ 5819513 (-)
lef1 lef1,LOC103361279 other upstream 2688176 7161474 ~ 7204699 (-)

Expression


Co-expression Network