si:dkey-187a12.4 (LOC108263835)


Basic Information

Item Value
gene id si:dkey-187a12.4
gene name LOC108263835
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14289382 ~ 14292863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941983.2
AAAGCTTGAATTTTGGAAACATTTTTGCCCTAACACTGGTTTGTGGTCTCTAATCTGTTTGGATGTGTCCTGTGTTCGCCCCGGTGCTTTATGGGAATTGTAGTTCCTGAAGGTTCTGGAAACGTTGCAGTGACGTTGCGGTAACGTGACATAACGTTAGCGAGCTGGAGGCAGTTTGACAACCACTTCCGCCTGTTTTCTTCGCAAGTCTTTGTCTTATGTGCTTAGTAAAAAAGAAGAGTTGAGGTGTTGTGAAGTCGCGCTGTGTAGGCTAGTCAGCTAGAATAAGAGCGATGGAAGGCAGTAATGGCACCAGCTCGAAGTGGGCGATGGAGCGGCGGGTGGAGGGGCTGGTGAACAAACACATGGCAGACATGGCACTGGACACACTTCAGCAGCGACTCTCTGCTGTGTCCCAGGAAATGAACCATCTGTCTGCTGAAATATCCAGACGAGAGGACTCGAAGCGTGTGGAGGATTTACCGCGGAGGAGTGACCCTCACTTCATCACAGGCTCTCTCCCGGAGTCTTATCACGAAGAGCTagtggaagaaaaaaagttaatgccAAACACATCCACATCAACATCCACATCaacatcctcctcctcctcctcctcctcagcagAAACTGCAGCTCAAAGAAAAATCATATCACTCCTGCTGGAgataaaagaagaacaacagAGGCAGTGGGCTGTGCTAAAAGACCTGCAAGCCATGATTCAAGGACACATGTGTGAGGAGGATGTTGAAACTCTGGATATAGATCTACCACTACAGACAATGGAACAGCTTGATGAAACAGAGAGATACTTGGAGAATGATGGAGCGCAGAAGAGAATGGTGTCTCACCTCTCCCGGATGGGTGGTGCAACAGTGGATGATGCAGTTAGACGCCTGATGCAGGCAGTTTTATCTTTCAGCGTCGGTTCTGAGCTGAACTGGGTTGGTCGAGGACAAAAAAGGAGCTTCAGAAATACCAGACTGCAAGGAGTTTTATTCCGTGCATTAAAGAAGACCCCTGTAGGAAAGGAGGCCACACACCATCAGTTTGCAGATGTAGTGAAGAAGTGGCTGCGATTTGCTCCATTCAGACAAGGAGGCAGCGGTCGGAGACAGCATTACAAACCTCCTGTAGAATTCATGTGCCCTAAGTATCATACTGATACAGAAGGGTGACAACAGTGTCTTATTGTTCACCATCCTGTTTCAACACAGTTCAAAGTAAAATTccaattaaaaaacacattttcatgtttctctgtgaatttttttttaatgagactTCTAAAGTATGATACAGCAGGAAAATGACCTCCCTCAATATTGTCTTAAAGCATAAAAAACAGTTCTAAAGCAGTACATGTTTGGGTTATCTGAATCATGAtttatgaagtattttaatctgttcactgaaaatgaaaagtatcattatttaaatattagtttgAGACTAGTATTCTGGCTTTACTAGATTTAGTTGCAGGTGTTCCTACAGGTAAcacaatgtaatgtaatgttttttagGAGTCACTCATGAGGTTGGGATGTAAAATCATGATATGCTCGTCCAGATGTCTACAGATTATAAGTGCCTTTCTGAAAATAGAAAGCCGAGTCTGTCCAGTTCATCATTCCACATGATACTGAAA

Function

NR:

description
uncharacterized protein LOC109888787

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941983.2 True 1654 mRNA 0.44 4 14289382 14292863

Neighbor

gene id symbol gene type direction distance location
soul2 NA coding upstream 92308 14193834 ~ 14197074 (+)
fancl fancl,LOC107585345 coding upstream 232919 14035638 ~ 14056463 (+)
bcl11aa bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107559339,LOC107743494,LOC107655449 coding upstream 655904 13588316 ~ 13633478 (+)
sec23ip sec23ip,LOC107655440 coding upstream 859122 13419948 ~ 13430260 (+)
inpp5f inpp5f,LOC107666413,LOC107726944 coding upstream 884707 13385486 ~ 13404675 (+)
rin2 rin2,LOC105893488 coding downstream 3471 14296334 ~ 14328299 (+)
slc17a5 slc17a5,LOC107673875,LOC107585335,LOC107693696,LOC107588676 coding downstream 38629 14331492 ~ 14341288 (+)
eef1a1a LOC108263602,LOC108441988,LOC108442579,LOC108258313,LOC107704332,LOC107602754 coding downstream 53734 14346597 ~ 14351235 (+)
asrgl1 asrgl1,LOC105911569,LOC103032358,LOC108442615,LOC107695955,LOC107585330,LOC107673965 coding downstream 302339 14595202 ~ 14611970 (+)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107588666 coding downstream 365893 14658756 ~ 14672999 (+)
G46217 NA non-coding upstream 1095 14286650 ~ 14288287 (+)
G46176 NA non-coding upstream 105736 14183437 ~ 14183646 (+)
G46175 NA non-coding upstream 106189 14182991 ~ 14183193 (+)
G45875 NA non-coding upstream 392847 13894142 ~ 13896535 (+)
LOC117596881 NA non-coding upstream 399533 13889279 ~ 13889849 (+)
G46337 NA non-coding downstream 95166 14388029 ~ 14388311 (+)
LOC113541837 NA non-coding downstream 324745 14617608 ~ 14626490 (+)
G46638 NA non-coding downstream 673043 14965906 ~ 15011989 (+)
G46713 NA non-coding downstream 721260 15014123 ~ 15015181 (+)
G46765 hps6 non-coding downstream 786950 15079813 ~ 15084310 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 2840 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 788332 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 1255032 13032050 ~ 13034350 (+)
col17a1b LOC108263226,LOC108426809 other upstream 1284059 12982406 ~ 13005323 (+)
spef1 spef1 other upstream 1352080 12929559 ~ 12937302 (+)
cgas NA other downstream 68504 14361367 ~ 14368100 (+)
borcs7 borcs7 other downstream 679705 14972568 ~ 14974068 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 1500543 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 1777851 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1831764 16124627 ~ 16134002 (+)

Expression


Co-expression Network