srfb (srf)


Basic Information

Item Value
gene id srfb
gene name srf
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12156217 ~ 12186613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942017.2
AAGGAAACATTGTATCTCTTTATATGGAGGAAAGTAGATCTTCGCGGACGGATTTTGTGTCTGTtgagcaaaaatatttacaatatacacAGGACACATTTCACGGTTTTGTCTCAGTAGTTGCCCAGTGAAGGATTGCGGAGGACGGTCGCGGCGGCTGCATATGTATCCAGGCCAGGGTAAATGTTTACGTGTATACGGTACGAACTAAGTGACATGGCGGATTGATCGCGACGGCGCGCTTCGTGTTTTCCTTTTAGAGAGAGCGGCACGGGTTTTGGGAAAACGGGGAGGCGATGCGAGCTGGAAGCCGGTGTGAAGGCTCTCGGGGGCAGCAGCAGTaacacttcagaaaaaaagggggagAACTTTGCAGTGGTAGTTTATAACGTATTCGTTCGtttgttttactttcattttggtttgtttaatgtGCATGCGTTATAATATTTACTGAGTACACAACCACCGACGGCTGCTCGGCGTTTAGGCGTCTCGCGTTTTCTCATGAATAGGATGTTATCCAGCCCGGCTGGGTCGGCACTGAGCGGAAACGGATCAGCGGGCGCGAGTGGTGCGGCTCACGGCTCTGTGGTGCTCGGCGGCGGGCTGCGTACGGGGCTCGCCCGGGCCGGACAGGCAGTGACTACCGGAGGTCCTTTCCCTGGTGCTGCAGGACGTGTGGGGGAAAGCGCGGGGATGCTGGGAGGCAGCGGGCCTGGGATCTCTTCCAGACCGGGTGTCAGACCCGGGAACGGCAGCGGGCTCGGCGCACTTCAGGCCGCCGCTCAGCCCGGCATGGGAGGAGGACTCGGTGCAATGCCCGCCAGATTTGACCGGGACAAAGAAGTCGGCGTACCGCAGCCATACAGCGCCTCGGACGCGGACTCCGAATCGGGAGACGAGGACGAGCCGACTGGTTCTTCGGGGAGCAGCAGGCGGGGAGTGAAGCGGGAGAGAGCCGAGATGGAAGGCGCTGGAATCGGCCAGGAGGCCGGAGCTCCGCCTGGGGGTTACGGGGTGCTGAGCGGCGGAGTCGCCGGAGCAAAGCCCGGCAAAAAAACACGCGGGAGAGTCAAGATTAAGATGGAGTTCATAGACAACAAGTTGCGGCGGTACACGACTTTCAGCAAGAGGAAGACTGGTATTATGAAGAAGGCATATGAACTCTCCACACTAACAGGCACTCAGGTGCTGCTCCTAGTGGCGAGTGAGACGGGCCACGTGTACACATTCGCCACGCGCAAGCTCCAGCCCATGATTACCAGTGAGACGGGAAAGGCTCTGATCCAAACGTGCCTGAACTCTCCAGACTCGCCTCCCCGCTCAGACCCGTCCACAGACCAGCGCATGAGCGCCACAGGCTTTGAGGAGACAGACCTCACCTATCAGGTGTCTGAATCTGAGAGCCTCGGAGAAACCAAGGACACTCTGAAGCCAGCCTTCACTGTGGCCAGCCTGCCAGGTAGTACCAGTGCCCAGGCTACAGTgcccaccacctccaccaccatgcaGGTGAGCAGCGGCCCCTCCTTCCCCATCACCAACTACCTGGCGCCCGTGtctggcagcagcagcagcgccaGTGGGAGCACCATAGCCAACACTAACGGGACTGTTCTGAAGAGCGCAGCCGCCACTGGAGGGGTCATGCAGCTCCCTGGAGGATTCACTTTCATGTCAgCAGGCACTCCTTTCCCTCCTGGGACTCCGGCCATCCCGTTGgggcagctgcagcagcactcTCTGGCTCTACAGGGGCAACAGGGTCAGACCCTCACTACTGCCACTGCTACAGCTACACAGACCCCACAGGCCCAGCAAGCTGTGTTTCGCCTCCCCGCTGCAGTCTCTCTTACAGgAGGAACGGTGGCCCAGCAGCTCCAGGCCATCCAGGTGCAACCCAGCACTCAGTCCAGCTCCATCAACACTGACAGCAGCCCTGAGATCTCCCAAACCAGCACTTCCTCCACAGCCGCAGTCAGTGTCCCTGCTACTATCGTCACGTCATCAGTGCCCACTTCTGTagcaggtcacatgatgtaCCCAAGCCCCCATGCAGTGATGTACGCCTCGGCCCCCACACTGTCCGATGGAGGCCTGGCTGTGCTCAACGCCTTCTCCCAGGGCGCCTCGGCTATGCAGGTGTCCCACGCACAGGCCCCGGATAcagGTGCTGTTCCTCAGGTGTTCCTCACAGCGCCCCCTGGCACGGTTCAGATCCCCGTTTCAGCGGTGCAGCTACATCCAATGGTGATTGGCCAGCAGTCCAGCGGCAGTAACAGTAATCTGACAGAGCTTCAGGTGGTCAATCTGGACACCACACAGAGCACCAAGAGTGATTGACAGGTGCCGCTGACTGAAGGCTCACCAGAGACTTACATCACTATTTATTGATGCCTTGTTCCATTTTGAAGCATTTCATCCATTTACACCatctgagtgtgtgattgtacagtttgtactgtaaatgtgtgtccTGACCTCACAAGGACACTGATGAATTGAGAGAATGTAAGTCTTCTCAGTTCTGATGTGTATTGAAATTTAAAGGACTAATTCTAACATGCGTTTTTGCAtgttatttgtatgtgtgtgaatgtatgagTGTAAGATTCATCAAAGGGAAATGAAAAACAGTGTTACCCAACTGTTGCACACACTGCAGCCTCTCACTTTGGCCAAAGATGAATTATTTTGTCAGTATTTCTGTGTGGAGATATATGTGCGTGTGCTTGAATAGGAAAAAGTTGCGGAGGTGTGAGCTATATCGGGGACGAGTGATCTCAAGTAAGAATGATATTAATAGGTGGTGGCTTTGAAGATGATCAAACCGGAgctgtacatattttttttttattttattattttagcgATAGTGCAATAGCATGTgctgtagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgttt
>XM_026942027.2
TAAGGAAACATTGTATCTCTTTATATGGAGGAAAGTAGATCTTCGCGGACGGATTTTGTGTCTGTtgagcaaaaatatttacaatatacacAGGACACATTTCACGGTTTTGTCTCAGTAGTTGCCCAGTGAAGGATTGCGGAGGACGGTCGCGGCGGCTGCATATGTATCCAGGCCAGGGTAAATGTTTACGTGTATACGGTACGAACTAAGTGACATGGCGGATTGATCGCGACGGCGCGCTTCGTGTTTTCCTTTTAGAGAGAGCGGCACGGGTTTTGGGAAAACGGGGAGGCGATGCGAGCTGGAAGCCGGTGTGAAGGCTCTCGGGGGCAGCAGCAGTaacacttcagaaaaaaagggggagAACTTTGCAGTGGTAGTTTATAACGTATTCGTTCGtttgttttactttcattttggtttgtttaatgtGCATGCGTTATAATATTTACTGAGTACACAACCACCGACGGCTGCTCGGCGTTTAGGCGTCTCGCGTTTTCTCATGAATAGGATGTTATCCAGCCCGGCTGGGTCGGCACTGAGCGGAAACGGATCAGCGGGCGCGAGTGGTGCGGCTCACGGCTCTGTGGTGCTCGGCGGCGGGCTGCGTACGGGGCTCGCCCGGGCCGGACAGGCAGTGACTACCGGAGGTCCTTTCCCTGGTGCTGCAGGACGTGTGGGGGAAAGCGCGGGGATGCTGGGAGGCAGCGGGCCTGGGATCTCTTCCAGACCGGGTGTCAGACCCGGGAACGGCAGCGGGCTCGGCGCACTTCAGGCCGCCGCTCAGCCCGGCATGGGAGGAGGACTCGGTGCAATGCCCGCCAGATTTGACCGGGACAAAGAAGTCGGCGTACCGCAGCCATACAGCGCCTCGGACGCGGACTCCGAATCGGGAGACGAGGACGAGCCGACTGGTTCTTCGGGGAGCAGCAGGCGGGGAGTGAAGCGGGAGAGAGCCGAGATGGAAGGCGCTGGAATCGGCCAGGAGGCCGGAGCTCCGCCTGGGGGTTACGGGGTGCTGAGCGGCGGAGTCGCCGGAGCAAAGCCCGGCAAAAAAACACGCGGGAGAGTCAAGATTAAGATGGAGTTCATAGACAACAAGTTGCGGCGGTACACGACTTTCAGCAAGAGGAAGACTGGTATTATGAAGAAGGCATATGAACTCTCCACACTAACAGGCACTCAGGTGCTGCTCCTAGTGGCGAGTGAGACGGGCCACGTGTACACATTCGCCACGCGCAAGCTCCAGCCCATGATTACCAGTGAGACGGGAAAGGCTCTGATCCAAACGTGCCTGAACTCTCCAGACTCGCCTCCCCGCTCAGACCCGTCCACAGACCAGCGCATGAGCGCCACAGGCTTTGAGGAGACAGACCTCACCTATCAGGTGTCTGAATCTGAGAGCCTCGGAGAAACCAAGGACACTCTGAAGCCAGCCTTCACTGTGGCCAGCCTGCCAGGTAGTACCAGTGCCCAGGCTACAGTgcccaccacctccaccaccatgcaGGTGAGCAGCGGCCCCTCCTTCCCCATCACCAACTACCTGGCGCCCGTGtctggcagcagcagcagcgccaGTGGGAGCACCATAGCCAACACTAACGGGACTGTTCTGAAGAGCGCAGCCGCCACTGGAGGGGTCATGCAGCTCCCTGGAGGATTCACTTTCATGTCAgCAGGCACTCCTTTCCCTCCTGGGACTCCGGCCATCCCGTTGgggcagctgcagcagcactcTCTGGCTCTACAGGGGCAACAGGGTCAGACCCTCACTACTGCCACTGCTACAGCTACACAGACCCCACAGGCCCAGCAAGCTGTGTTTCGCCTCCCCGCTGCAGTCTCTCTTACAGgAGGAACGGTGGCCCAGCAGCTCCAGGCCATCCAGGTGCAACCCAGCACTCAGTCCAGCTCCATCAACACTGACAGCAGCCCTGAGATCTCCCAAACCAGCACTTCCTCCACAGCCGCAGTCAGTGTCCCTGCTACTATCGTCACGTCATCAGTGCCCACTTCTGTagcaggtcacatgatgtaCCCAAGCCCCCATGCAGTGATGTACGCCTCGGCCCCCACACTGTCCGATGGAGGCCTGGCTGTGCTCAACGCCTTCTCCCAGGGCGCCTCGGCTATGCAGGTGTCCCACGCACAGGCCCCGGATAcagGTGCTGTTCCTCAGGTGTTCCTCACAGCGCCCCCTGGCACGGTTCAGATCCCCGTTTCAGCGGTGCAGCTACATCCAGTACGGCAAGATCTCCACTTTACAAATGGTGATTGGCCAGCAGTCCAGCGGCAGTAACAGTAATCTGACAGAGCTTCAGGTGGTCAATCTGGACACCACACAGAGCACCAAGAGTGATTGACAGGTGCCGCTGACTGAAGGCTCACCAGAGACTTACATCACTATTTATTGATGCCTTGTTCCATTTTGAAGCATTTCATCCATTTACACCatctgagtgtgtgattgtacagtttgtactgtaaatgtgtgtccTGACCTCACAAGGACACTGATGAATTGAGAGAATGTAAGTCTTCTCAGTTCTGATGTGTATTGAAATTTAAAGGACTAATTCTAACATGCGTTTTTGCAtgttatttgtatgtgtgtgaatgtatgagTGTAAGATTCATCAAAGGGAAATGAAAAACAGTGTTACCCAACTGTTGCACACACTGCAGCCTCTCACTTTGGCCAAAGATGAATTATTTTGTCAGTATTTCTGTGTGGAGATATATGTGCGTGTGCTTGAATAGGAAAAAGTTGCGGAGGTGTGAGCTATATCGGGGACGAGTGATCTCAAGTAAGAATGATATTAATAGGTGGTGGCTTTGAAGATGATCAAACCGGAgctgtacatattttttttttattttattattttagcgATAGTGCAATAGCATGTgctgtagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgttt

Function

symbol description
srf Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; protein homodimerization activity; and serum response element binding activity. Involved in several processes, including cell migration involved in sprouting angiogenesis; negative regulation of amyloid-beta clearance; and regulation of transcription, DNA-templated. Acts upstream of or within positive regulation of cell differentiation; positive regulation of transcription by RNA polymerase II; and trophectodermal cell differentiation. Located in nucleus. Implicated in cardiomyopathy and lymphangioleiomyomatosis. Biomarker of congestive heart failure and lymphangioleiomyomatosis.

NR:

description
PREDICTED: serum response factor isoform X2

GO: NA

KEGG:

id description
K04378 SRF; serum response factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942017.2 False 2948 mRNA 0.55 8 12156217 12186612
XM_026942027.2 True 2974 mRNA 0.54 8 12156217 12186613

Neighbor

gene id symbol gene type direction distance location
LOC113542467 lrrc27 coding downstream 126073 12021991 ~ 12030144 (-)
LOC113540195 inpp5a coding downstream 182712 11817728 ~ 11973505 (-)
valopa LOC100305024,LOC108426856 coding downstream 369582 11772007 ~ 11786635 (-)
LOC113538140 LOC108262825,LOC108426858,LOC107689348,LOC562831,LOC107663569,LOC107750139,LOC106576778 coding downstream 506015 11595230 ~ 11650202 (-)
LOC113544831 adgra1 coding downstream 589977 11389875 ~ 11566240 (-)
ptk7b LOC108263634,LOC108426849 coding upstream 3604 12190217 ~ 12289852 (-)
klc1b klc4,LOC108263390,LOC108426848,LOC102210354,LOC102306811 coding upstream 105174 12291787 ~ 12330928 (-)
cdkl1 cdkl1,LOC105890986,LOC107705442,LOC107602970 coding upstream 156622 12343235 ~ 12356768 (-)
map4k5 map4k5 coding upstream 171659 12358272 ~ 12401487 (-)
sav1 sav1,LOC106517965,LOC107602930 coding upstream 235668 12422281 ~ 12431644 (-)
G44848 NA non-coding downstream 148188 12007826 ~ 12008029 (-)
G44820 NA non-coding downstream 242188 11912210 ~ 11914029 (-)
G44818 NA non-coding downstream 316395 11839452 ~ 11839822 (-)
G44582 NA non-coding downstream 768271 11387206 ~ 11387946 (-)
G44275 NA non-coding downstream 1175922 10978646 ~ 10980295 (-)
LOC117596852 NA non-coding upstream 54996 12241609 ~ 12242121 (-)
G45236 NA non-coding upstream 103714 12290327 ~ 12303541 (-)
G45249 NA non-coding upstream 181900 12368513 ~ 12369349 (-)
LOC117596889 NA non-coding upstream 440433 12627046 ~ 12627481 (-)
LOC117596888 NA non-coding upstream 441064 12627677 ~ 12628388 (-)
tmem254 tmem254 other downstream 3695 12144840 ~ 12152522 (-)
pwwp2b pwwp2b other downstream 134749 12010931 ~ 12021468 (-)
trnag-gcc_1 NA other downstream 447533 11708614 ~ 11708684 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 1994694 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 2147656 9999959 ~ 10008561 (-)
nin nin other upstream 248496 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 338023 12524636 ~ 12534215 (-)
LOC113539135 NA other upstream 444600 12631213 ~ 12633418 (-)
trnae-cuc_8 NA other upstream 452639 12639252 ~ 12639323 (-)
trnak-cuu_1 NA other upstream 452917 12639530 ~ 12639602 (-)

Expression


Co-expression Network