nsmce4a (nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317)


Basic Information

Item Value
gene id nsmce4a
gene name nsmce4a,LOC108262367,LOC107688307,LOC107588653,LOC107707575,LOC107585317
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15085196 ~ 15090877 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942083.2
aaccctacgtagtgcacttaGGTAGGGAGTGTGTGGctgtttgggattcagccaaGTATGCAAATCGGACAGAAGTCTACTTCCGTGTTTATTTTCGCGCGAAGCCATTCTGTAGCTGGGACCGGTATTCTGCAGGTTGTAAATACTTCCACGCTTTCAAACAAGGCCTTGTTAAAGATGTCCGATTCGAGACGGAGGGCCAGCAGAGGCAGTCAGGAGGAGGCTTCTGGTCATGGTAATGGAGTGGGTGGACGCGGTAGACCAGAAAGAGCAGCAGACACGGGTGAGGATGATGAAGCAGCAGGTCCATCAGGCATCCACGAGGAAGACGACGACCCTGCCAGGCGGAGGGAGATCAGAAGCCAGTACAGGGATCTCATCAACTCTGTTCAGCAAAACCGTGAGGACATGCTGAATCCTGCCAACAATAAACTGTGTGATGTGTTAGAGGAGGCCAACAAACTGTTTGCTAATGTCAGGCAGGCTCGAGAGGCTGCACTGGATGCACAGCTGCTTGTCCTAGCCACAGACCTGGGGAGAGAAAAGGCCAGCCAGCTGCATGCTGAGGGTTCAGCTTTTGACCCGTCTGCATTTGCAGAGCATTTGTTGTCCTTCATGGGTCTCAATCGCttagaagaggaggaggatggtgaTGCCGGTTTGGATGGGTATATGCCTCCAGATGCCTGGCAGCGGCTTTCCAAAAGAGCACAATATTGCTTCAAAACAGCTCCTTCATTCCACTACATGTTCGGCTCATTTTTGGCTGAACCACCACCACCACGGCAGCGGGTTGAGAGACAAAGGAAAGCTCCCAGCAAAGAAGCAAAAAGAATCATGCCCACTCAGCTAAAGAAAATGGAAGAGTCACATCAGGAAGCTACAGAGAAAGAGGTGGAGAGGATTTTGGGGTGCCTTCAGCGTTACTTTGCTGATGATCCACAGTCCCCGATATTGTATTACGAGTTTGTTGTTGACCCTAGCTCCTTTTCCCGGACAGTGGAGAACATTTTCCACACCTCGTTTCTTATCAGGgaCGGCCTGGCAAGGATTTATCTAAACAATAACAAACTTCCTTGTATAGCTCCAGTTGAGGAGGGGGAGTTAGAGCCCGGAGGTGCCAACACCCGTCATCAGTGTGTCATCTCAATCAGTCCAGCTAGCTGGAGGGAGATCATTGAGGCCTTTGATATTAAGGAGGCTTTGATTCCCACCCCAAAAGTATTGTCACAAGAaggctgatttaaaaaaaaaaaaaa
>XM_026942091.2
gtagtgcacttaGGTAGGGAGTGTGTGGctgtttgggattcagccaaGTATGCAAATCGGACAGAAGTCTACTTCCGTGTTTATTTTCGCGCGAAGCCATTCTGTAGCTGGGACCGGTATTCTGCAGGTTGTAAGTGTAATCCCAAACAGAAATACTTCCACGCTTTCAAACAAGGCCTTGTTAAAGATGTCCGATTCGAGACGGAGGGCCAGCAGAGGCAGTCAGGAGGAGGCTTCTGGTCATGGTAATGGAGTGGGTGGACGCGGTAGACCAGAAAGAGCAGCAGACACGGGTGAGGATGATGAAGCAGCAGGTCCATCAGGCATCCACGAGGAAGACGACGACCCTGCCAGGCGGAGGGAGATCAGAAGCCAGTACAGGGATCTCATCAACTCTGTTCAGCAAAACCGTGAGGACATGCTGAATCCTGCCAACAATAAACTGTGTGATGTGTTAGAGGAGGCCAACAAACTGTTTGCTAATGTCAGGCAGGCTCGAGAGGCTGCACTGGATGCACAGCTGCTTGTCCTAGCCACAGACCTGGGGAGAGAAAAGGCCAGCCAGCTGCATGCTGAGGGTTCAGCTTTTGACCCGTCTGCATTTGCAGAGCATTTGTTGTCCTTCATGGGTCTCAATCGCttagaagaggaggaggatggtgaTGCCGGTTTGGATGGGTATATGCCTCCAGATGCCTGGCAGCGGCTTTCCAAAAGAGCACAATATTGCTTCAAAACAGCTCCTTCATTCCACTACATGTTCGGCTCATTTTTGGCTGAACCACCACCACCACGGCAGCGGGTTGAGAGACAAAGGAAAGCTCCCAGCAAAGAAGCAAAAAGAATCATGCCCACTCAGCTAAAGAAAATGGAAGAGTCACATCAGGAAGCTACAGAGAAAGAGGTGGAGAGGATTTTGGGGTGCCTTCAGCGTTACTTTGCTGATGATCCACAGTCCCCGATATTGTATTACGAGTTTGTTGTTGACCCTAGCTCCTTTTCCCGGACAGTGGAGAACATTTTCCACACCTCGTTTCTTATCAGGgaCGGCCTGGCAAGGATTTATCTAAACAATAACAAACTTCCTTGTATAGCTCCAGTTGAGGAGGGGGAGTTAGAGCCCGGAGGTGCCAACACCCGTCATCAGTGTGTCATCTCAATCAGTCCAGCTAGCTGGAGGGAGATCATTGAGGCCTTTGATATTAAGGAGGCTTTGATTCCCACCCCAAAAGTATTGTCACAAGAaggctgatttaaaaaaaaaaaaaa
>XM_026942098.2
TACACTGAACTACACTGTAAATCATGATAGTGATGTAGAATGAGGGTTGTGTAATGTTGTGGTATACGTTTTCAGTAGCCTGAGTATTACTGAAATGCGTTTGTTTATAGCTAGCTCGCAGCGCAGACGCCAGTAGTAATGACTTTAGATAACTAGCAATAGCTTAAACTCTACAAGGAAGCAAACTAACGGCAGCTAGCGTTTAAAAGCCCAGACTGAAATACTTCCACGCTTTCAAACAAGGCCTTGTTAAAGATGTCCGATTCGAGACGGAGGGCCAGCAGAGGCAGTCAGGAGGAGGCTTCTGGTCATGGTAATGGAGTGGGTGGACGCGGTAGACCAGAAAGAGCAGCAGACACGGGTGAGGATGATGAAGCAGCAGGTCCATCAGGCATCCACGAGGAAGACGACGACCCTGCCAGGCGGAGGGAGATCAGAAGCCAGTACAGGGATCTCATCAACTCTGTTCAGCAAAACCGTGAGGACATGCTGAATCCTGCCAACAATAAACTGTGTGATGTGTTAGAGGAGGCCAACAAACTGTTTGCTAATGTCAGGCAGGCTCGAGAGGCTGCACTGGATGCACAGCTGCTTGTCCTAGCCACAGACCTGGGGAGAGAAAAGGCCAGCCAGCTGCATGCTGAGGGTTCAGCTTTTGACCCGTCTGCATTTGCAGAGCATTTGTTGTCCTTCATGGGTCTCAATCGCttagaagaggaggaggatggtgaTGCCGGTTTGGATGGGTATATGCCTCCAGATGCCTGGCAGCGGCTTTCCAAAAGAGCACAATATTGCTTCAAAACAGCTCCTTCATTCCACTACATGTTCGGCTCATTTTTGGCTGAACCACCACCACCACGGCAGCGGGTTGAGAGACAAAGGAAAGCTCCCAGCAAAGAAGCAAAAAGAATCATGCCCACTCAGCTAAAGAAAATGGAAGAGTCACATCAGGAAGCTACAGAGAAAGAGGTGGAGAGGATTTTGGGGTGCCTTCAGCGTTACTTTGCTGATGATCCACAGTCCCCGATATTGTATTACGAGTTTGTTGTTGACCCTAGCTCCTTTTCCCGGACAGTGGAGAACATTTTCCACACCTCGTTTCTTATCAGGgaCGGCCTGGCAAGGATTTATCTAAACAATAACAAACTTCCTTGTATAGCTCCAGTTGAGGAGGGGGAGTTAGAGCCCGGAGGTGCCAACACCCGTCATCAGTGTGTCATCTCAATCAGTCCAGCTAGCTGGAGGGAGATCATTGAGGCCTTTGATATTAAGGAGGCTTTGATTCCCACCCCAAAAGTATTGTCACAAGAaggctgatttaaaaaaaaaaaaaa
>XM_034302969.1
TGGGACCGGTATTCTGCAGAAATACTTCCACGCTTTCAAACAAGGCCTTGTTAAAGATGTCCGATTCGAGACGGAGGGCCAGCAGAGGCAGTCAGGAGGAGGCTTCTGGTCATGGTAATGGAGTGGGTGGACGCGGTAGACCAGAAAGAGCAGCAGACACGGGTGAGGATGATGAAGCAGCAGGTCCATCAGGCATCCACGAGGAAGACGACGACCCTGCCAGGCGGAGGGAGATCAGAAGCCAGTACAGGGATCTCATCAACTCTGTTCAGCAAAACCGTGAGGACATGCTGAATCCTGCCAACAATAAACTGTGTGATGTGTTAGAGGAGGCCAACAAACTGTTTGCTAATGTCAGGCAGGCTCGAGAGGCTGCACTGGATGCACAGCTGCTTGTCCTAGCCACAGACCTGGGGAGAGAAAAGGCCAGCCAGCTGCATGCTGAGGGTTCAGCTTTTGACCCGTCTGCATTTGCAGAGCATTTGTTGTCCTTCATGGGTCTCAATCGCttagaagaggaggaggatggtgaTGCCGGTTTGGATGGGTATATGCCTCCAGATGCCTGGCAGCGGCTTTCCAAAAGAGCACAATATTGCTTCAAAACAGCTCCTTCATTCCACTACATGTTCGGCTCATTTTTGGCTGAACCACCACCACCACGGCAGCGGGTTGAGAGACAAAGGAAAGCTCCCAGCAAAGAAGCAAAAAGAATCATGCCCACTCAGCTAAAGAAAATGGAAGAGTCACATCAGGAAGCTACAGAGAAAGAGGTGGAGAGGATTTTGGGGTGCCTTCAGCGTTACTTTGCTGATGATCCACAGTCCCCGATATTGTATTACGAGTTTGTTGTTGACCCTAGCTCCTTTTCCCGGACAGTGGAGAACATTTTCCACACCTCGTTTCTTATCAGGgaCGGCCTGGCAAGGATTTATCTAAACAATAACAAACTTCCTTGTATAGCTCCAGTTGAGGAGGGGGAGTTAGAGCCCGGAGGTGCCAACACCCGTCATCAGTGTGTCATCTCAATCAGTCCAGCTAGCTGGAGGGAGATCATTGAGGCCTTTGATATTAAGGAGGCTTTGATTCCCACCCCAAAAGTATTGTCACAAGAaggctgatttaaaaaaaaaaaaaa

Function

symbol description
nsmce4a Predicted to be involved in DNA repair. Predicted to act upstream of or within DNA recombination and cellular response to DNA damage stimulus. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin bud. Orthologous to several human genes including NSMCE4A (NSE4 homolog A, SMC5-SMC6 complex component).

NR:

description
PREDICTED: non-structural maintenance of chromosomes element 4 homolog A

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942083.2 False 1259 mRNA 0.50 11 15085196 15090877
XM_026942091.2 False 1269 mRNA 0.49 11 15085204 15090877
XM_026942098.2 True 1337 mRNA 0.48 11 15085356 15090877
XM_034302969.1 False 1138 mRNA 0.50 11 15085312 15090877

Neighbor

gene id symbol gene type direction distance location
prom2 LOC108263179 coding upstream 7139 15059462 ~ 15078057 (+)
ldb1a ldb1,ldb1a,LOC108442788,LOC108444470,LOC107707596 coding upstream 26417 15034063 ~ 15058779 (+)
polr1c polr1c,rpac1 coding upstream 55381 15024924 ~ 15029815 (+)
cnnm2a cnnm2,cnnm2a,LOC107585325,LOC107716327,LOC107673921,LOC107588659 coding upstream 91126 14977725 ~ 14994070 (+)
wbp1la wbp1l coding upstream 124003 14946833 ~ 14961193 (+)
tacc2 LOC108263494 coding downstream 953 15091830 ~ 15156743 (+)
ly6pge si:ch73-28h20.1,LOC107673896,LOC107585320 coding downstream 66880 15157757 ~ 15160085 (+)
unc5b unc5b,LOC108263852 coding downstream 168486 15259363 ~ 15322047 (+)
myofl LOC108263542,LOC108442891 coding downstream 234355 15325232 ~ 15354413 (+)
parga LOC108263327 coding downstream 264940 15355817 ~ 15386394 (+)
G46765 hps6 non-coding upstream 886 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 70015 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 73207 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 458706 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 696885 14388029 ~ 14388311 (+)
G46833 NA non-coding downstream 328152 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 382324 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 620260 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 802704 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 942427 16033304 ~ 16035339 (+)
borcs7 borcs7 other upstream 111128 14972568 ~ 14974068 (+)
cgas NA other upstream 717096 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 798654 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1584146 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2050846 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 702529 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 979837 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 1033750 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 1143637 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 1194245 16285122 ~ 16308898 (+)

Expression


Co-expression Network