sgms2a (sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470)


Basic Information

Item Value
gene id sgms2a
gene name sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7126787 ~ 7140910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942108.2
TTACcatctgtgtgcatgtggaaGACATTTTCCCCTGCCAGCTTTCCACCACACATGTCCCCATCAGGGCAGAAGGGTGGAGGCTGGGGAAGCATGCCACTCCGAGTTTGAGAGAGCGAGAAGGATAAggctggaggaggaggacacacacacacacacagagacgcacacacacatacgcaggGACATAAGCTACAGCTGGGATTGCGTGTGACTCCAGGACAGATCTGTGGTATTCAGCATTCAGATGTCGTCGTCTGGATGCTGGAGCGCCACACCTGAAACCTCGAACCCTGAAGCCATTCATTTGCAGCAGTGACGTGGGCCGGTCTGGGGGAAGCAGCCACGCCTGGTGGATCACAgtctgtgtgtgattagtggGTAGCGTGTGGGGCTCTCATGGCATCAGCAGACCACCAATGCGAGCGACACCCCACAGGTGCCCACCCACACATCCACCCGCAATGCCCTGTACACAGCCCTTCAGCAGAGGAAGTGAAGAACAGTGGCCTACGCAAGGGCTTGAGCAGACACAGAGACTATGTGAAGATCTCTGTACCTGATGGCAAGGGCAAGCCTCCACCCATGGAGTGGTGGAAGACGGTGATTGCATTCGTGTACGCAGCTTTTAACCTGGTGCTGACCACGGTGATGATCACAGTGGTGCACGAGAGAGTCCCAGAGAAAGACAGCAGCCCACCACTGCCGGATAAGTTCTTCGACTATGTAGACCGCGTGAAGTGGGCTTTCACAGTGACCGAGGTGAATGGGATGCTGCTGGTGGGGATTTGGTCTATACAATGGCTCTTCCATAGATACCGGGCCATCTTGGGCAGGAGGTTCTTCTTCCTAATGGGCACTTTGTACCTGTATCGCTGCGTCACCATGTACATCACCACTCTGCCCGTGCCTGGCATGCACATGACCTGTGCCCCAAAGctctatGGAGACTCCCAGGCGAAACTACAGCGAGTTCTGCAGCTGATGTCTGGAGCTGGCCTGTCCATCACTGGTTCCCACATCATGTGCGGTGACTTCCTGTACAGCGGCCACACGGTCATGCTCACCCTCACCTACCTGTTCATCAAGGAGTACTCCCCCCGTTCGTTCTGGTGGTATCACCTGCTCTGCTGGCTCCTGGCTGCAGTGGGTGCAGTGTGTATCCTCGTGGCTCACGAACACTACAGCGTGGACGTGGTGGTGGCATACTTCATCACCTCCCGCCTCTTCTACTGGTACCACACCATGGCCAATGTACAGGCTCTAAAGTGTTCGCCCAACAACTACCTCACGCACACGTGGTGGAACCCCATCTTCAACTTCCTGGAGCGTAATGTGCAGTCGCAAGTGCCTTGTTCGTTCTGCTGGCCGCTGACGTGGCCTCCAGCCTGCCTGAAGAACCCGTGTAAAAAGTACTCCATGGTGCAGAGCGTTCGCGAGGAGTGACTGTCACATCTTCACCTCCACACTGTTACTTTTCTTTACAAATACATACAGATCCTTTATTTATGAATACCTGAAATCTTGCATATCAAGAATACCAAAGACTTTGTGAAGGGGTTGTGAGAAATCAATGGCTCAggtttaatcattattaaaaagatgaaaaaaaaaaaaacattaagcccatttttttttgtttggaaacCATGCAAAattcaataattttaaaaactttaccTGTTactaattgatttttttttcccaaataaattaatatgcaaTGAATTATATGTAGAATATTCTATGAATAAATGGTAttcaccttgattttttttttttaactcaatgAAGTGGTCGCAATTGTGCCTTTTTAAGCACGTAATGTTGAATTTTATTACTCAGTTTCAACTGTTTGttgaata
>XM_026942115.2
TTACcatctgtgtgcatgtggaaGACATTTTCCCCTGCCAGCTTTCCACCACACATGTCCCCATCAGGGCAGAAGGGTGGAGGCTGGGGAAGCATGCCACTCCGAGTTTGAGAGAGCGAGAAGGATAAggctggaggaggaggacacacacacacacacagagacgcacacacacatacgcaggGACATAAGCTACAGCTGGGATTGCGTGTGACTCCAGGACAGATCTGTGGTATTCAGCATTCAGATGTCGTCGTCTGGATGGTACAGtaaaatttctctcttttttggctgaatgtttaaaatatcgCTGGAGCGCCACACCTGAAACCTCGAACCCTGAAGCCATTCATTTGCAGCAGTGACGTGGGCCGGTCTGGGGGAAGCAGCCACGCCTGGTGGATCACAgtctgtgtgtgattagtggGTAGCGTGTGGGGCTCTCATGGCATCAGCAGACCACCAATGCGAGCGACACCCCACAGGTGCCCACCCACACATCCACCCGCAATGCCCTGTACACAGCCCTTCAGCAGAGGAAGTGAAGAACAGTGGCCTACGCAAGGGCTTGAGCAGACACAGAGACTATGTGAAGATCTCTGTACCTGATGGCAAGGGCAAGCCTCCACCCATGGAGTGGTGGAAGACGGTGATTGCATTCGTGTACGCAGCTTTTAACCTGGTGCTGACCACGGTGATGATCACAGTGGTGCACGAGAGAGTCCCAGAGAAAGACAGCAGCCCACCACTGCCGGATAAGTTCTTCGACTATGTAGACCGCGTGAAGTGGGCTTTCACAGTGACCGAGGTGAATGGGATGCTGCTGGTGGGGATTTGGTCTATACAATGGCTCTTCCATAGATACCGGGCCATCTTGGGCAGGAGGTTCTTCTTCCTAATGGGCACTTTGTACCTGTATCGCTGCGTCACCATGTACATCACCACTCTGCCCGTGCCTGGCATGCACATGACCTGTGCCCCAAAGctctatGGAGACTCCCAGGCGAAACTACAGCGAGTTCTGCAGCTGATGTCTGGAGCTGGCCTGTCCATCACTGGTTCCCACATCATGTGCGGTGACTTCCTGTACAGCGGCCACACGGTCATGCTCACCCTCACCTACCTGTTCATCAAGGAGTACTCCCCCCGTTCGTTCTGGTGGTATCACCTGCTCTGCTGGCTCCTGGCTGCAGTGGGTGCAGTGTGTATCCTCGTGGCTCACGAACACTACAGCGTGGACGTGGTGGTGGCATACTTCATCACCTCCCGCCTCTTCTACTGGTACCACACCATGGCCAATGTACAGGCTCTAAAGTGTTCGCCCAACAACTACCTCACGCACACGTGGTGGAACCCCATCTTCAACTTCCTGGAGCGTAATGTGCAGTCGCAAGTGCCTTGTTCGTTCTGCTGGCCGCTGACGTGGCCTCCAGCCTGCCTGAAGAACCCGTGTAAAAAGTACTCCATGGTGCAGAGCGTTCGCGAGGAGTGACTGTCACATCTTCACCTCCACACTGTTACTTTTCTTTACAAATACATACAGATCCTTTATTTATGAATACCTGAAATCTTGCATATCAAGAATACCAAAGACTTTGTGAAGGGGTTGTGAGAAATCAATGGCTCAggtttaatcattattaaaaagatgaaaaaaaaaaaaacattaagcccatttttttttgtttggaaacCATGCAAAattcaataattttaaaaactttaccTGTTactaattgatttttttttcccaaataaattaatatgcaaTGAATTATATGTAGAATATTCTATGAATAAATGGTAttcaccttgattttttttttttaactcaatgAAGTGGTCGCAATTGTGCCTTTTTAAGCACGTAATGTTGAATTTTATTACTCAGTTTCAACTGTTTGttgaatat

Function

symbol description
sgms2 Enables ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Involved in regulation of bone mineralization and sphingomyelin biosynthetic process. Located in Golgi apparatus and plasma membrane. Is integral component of Golgi membrane and integral component of plasma membrane. Implicated in calvarial doughnut lesions with bone fragility.

NR:

description
PREDICTED: phosphatidylcholine:ceramide cholinephosphotransferase 2

GO: NA

KEGG:

id description
K04714 SGMS; shingomyelin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942108.2 False 1865 mRNA 0.49 6 7126787 7140909
XM_026942115.2 True 1912 mRNA 0.49 6 7126787 7140910

Neighbor

gene id symbol gene type direction distance location
tbck tbck,LOC107757006,LOC107675790,LOC107594431,LOC107729351,LOC107684277 coding upstream 209132 6844872 ~ 6917655 (+)
dkk2 dkk2 coding upstream 331279 6779406 ~ 6795508 (+)
papss1 papss1 coding upstream 378723 6718851 ~ 6748064 (+)
abcg2d LOC108261237,LOC108262954,LOC108262959,LOC108441148 coding upstream 427268 6681141 ~ 6699519 (+)
ppm1k ppm1k,LOC108262962,LOC107706815,LOC107675910,LOC107594437,LOC107729359,LOC107684283 coding upstream 446501 6662378 ~ 6680286 (+)
LOC113544242 LOC108262960,LOC108429574,LOC103032979,LOC107594430 coding downstream 1528 7142438 ~ 7149125 (+)
hadh hadh,LOC107594428 coding downstream 9375 7150285 ~ 7155500 (+)
LOC113541438 mcub,LOC108262756 coding downstream 150811 7291721 ~ 7315462 (+)
LOC113542004 LOC108263504,LOC108263505,LOC108263506 coding downstream 202376 7343286 ~ 7346567 (+)
LOC113541239 NA coding downstream 213158 7354068 ~ 7356693 (+)
G41951 NA non-coding upstream 109862 7016704 ~ 7016925 (+)
G41857 NA non-coding upstream 157948 6951392 ~ 6968839 (+)
G41752 pkd2 non-coding upstream 423981 6662282 ~ 6702806 (+)
G41654 NA non-coding upstream 524624 6601912 ~ 6602163 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding upstream 527820 6598703 ~ 6598967 (+)
G42093 NA non-coding downstream 207249 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding downstream 220290 7361200 ~ 7364931 (+)
G42208 NA non-coding downstream 281181 7422091 ~ 7422296 (+)
LOC117596850 NA non-coding downstream 332460 7473370 ~ 7475040 (+)
G42295 NA non-coding downstream 500025 7640935 ~ 7644922 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 898102 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1768927 5263582 ~ 5357860 (+)
G41047 NA other upstream 1785037 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2355183 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 3292161 3831867 ~ 3834626 (+)
G42075 NA other downstream 63040 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 479635 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 508288 7649198 ~ 7671410 (+)
G42685 NA other downstream 1324837 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 1328714 8469624 ~ 8469881 (+)

Expression


Co-expression Network