opn3 (opn3,LOC107676370)


Basic Information

Item Value
gene id opn3
gene name opn3,LOC107676370
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10607859 ~ 10615623 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942485.2
TGGGTATAGTGAGCTGTGCAGCCAGAGGACGCATTAACGGTGCTGAAGGACAAGAGAGCGTGGAGTTTCACGCATACTCCGCGCTAGGTTTCTCCGAGCGGCCACCAGTCCAgccagcagtagcagtagcagaaTGGCAGACGCTACATTACTCCTGCGATGACTCCTCTGAACGACACCGGGACTCGGATGCACGCGGACACCTCGCTGTTCCCTGTAGGAACCTACAAACTTCTCGCCTTCACTATCGGAACCATCGGCGTGCTGGGTTTCTGCAACAATCTGCTCGTCCTTGCACTTTACTACAAGTTTAAGAGGCTGCGGACGCCCACCAACTTACTGCTGGTGAACATCAGTGTGAGCGACCTGCTGGTGTCGGTGATCGGGACCAACTTCACCTTGGTCTCGTGTTTGGAGAGAGGATGGGTGTGGGACACCACTACGTGTGTGTGGGACGGATTCAGCAACAGCCTGTTCGGTATCGTGTCCATCATGACTCTGTGTACCCTGGCATATGAACGCTACATTCGAGTGGTACATGCCAAGGTCATAGATTTCCCTTGGGCCTGGAGAGCCATCACCCACATCTGGCTTTACTCACTTGCATGGACTGGTGCTCCTCTCCTGGGCTGGAACAGGTACACCCTGGAGATCCACCAACTGGGCTGCTCCTTGGATTGGGCCTCTAAAGACCCCAATGATGCCTCCTTCAtccttttattcctctttgcCTGCTTCTTTGTTCCTGTGGGGATCATGGCCTACTGCTATGGGAACATTTTGTACACAGTGCAcatgTTGCGCTCCATTGAGGATCTGCAGACATTGCAAATCATTAAGGTCCTACGCTATGAGAAGAAGTTGGCCACCATGTTCCTGTTGATGATTTTCTGTTATCTGCTGTGCTGGACACCCTATGCCGTGGTCTCCATGCTGGTAGCTTTTGGCAAGCAGAGTGTCGTCTCGCCCACTGTTGCCATCATCCCCTCAGTCTTCGCCAAGTCCAGCACAGCTTATAACCCAATTATATATGGCTTCATGAGCAGGAAGTTTCGGCGTTGCATGTTGCAATTGCTGTGCTCCCGCCTGGCCCACCTGCAGTGTGGCATTAAGGACCACCCCCTGACCTGCTCCAGCCAACCAGTACGTCCCATCGTGATGTCACAGAGCCGTGATGACAGGCCTAAGAAAAGGGTGACGTTCAACTCCTCTTCCATTGTTTTCATCATTGCCAGCAATGACACAGACACTCTGGATGTCAGCTCCAAATGTAGTGAGTCATCAGAGATCAACGTGATTCAAGTCCGACCCCTTTGACCCCAGCACAAGTactctgaaagtactggaacggcacggccaattcttttgtttttgctataccttgaagacatttgggtttgagatcaaaagatgaatatga

Function

symbol description
opn3 Enables retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human OPN3 (opsin 3).

NR:

description
PREDICTED: opsin-3

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04256 OPN3; c-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942485.2 True 1420 mRNA 0.52 4 10607859 10615623

Neighbor

gene id symbol gene type direction distance location
pbld LOC108261389,LOC108263388 coding downstream 14619 10587876 ~ 10593240 (-)
LOC113541130 NA coding downstream 39031 10567357 ~ 10568828 (-)
mtg1 mtg1,LOC107666383,LOC107565923,LOC107696879 coding downstream 45271 10557601 ~ 10562588 (-)
chchd1 chchd1 coding downstream 90902 10513951 ~ 10516957 (-)
si:ch211-51a6.2 si:ch211-51a6.2,LOC108263106,LOC108438184,LOC106606783,LOC107555315,LOC107565929 coding downstream 96012 10492837 ~ 10511847 (-)
cdc42ep3 cdc42ep3 coding upstream 34830 10650453 ~ 10659241 (-)
LOC113545523 cyp1b coding upstream 115908 10731531 ~ 10735897 (-)
polr1b polr1b coding upstream 170118 10785741 ~ 10797095 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 229408 10845031 ~ 10849713 (-)
dennd10 fam45a,LOC106576813,LOC106604714,LOC107711433 coding upstream 240515 10856138 ~ 10862110 (-)
G43987 NA non-coding downstream 291411 10315725 ~ 10316448 (-)
G43982 NA non-coding downstream 302777 10291067 ~ 10305082 (-)
G43981 NA non-coding downstream 342271 10265356 ~ 10265588 (-)
G43978 NA non-coding downstream 353921 10253724 ~ 10253938 (-)
G43910 NA non-coding downstream 364977 10241941 ~ 10242882 (-)
G44103 NA non-coding upstream 38091 10653714 ~ 10655844 (-)
G44105 NA non-coding upstream 57723 10673346 ~ 10723668 (-)
G44173 NA non-coding upstream 201049 10816672 ~ 10817292 (-)
G44262 NA non-coding upstream 306686 10922309 ~ 10925258 (-)
G44271 NA non-coding upstream 337882 10953505 ~ 10956492 (-)
opn4a opn4,opn4a,LOC108438206,LOC107706026,LOC107568552,LOC107696889 other downstream 446336 10136310 ~ 10161523 (-)
sncga sncg,sncga,LOC108438198,LOC107601819 other downstream 599298 9999959 ~ 10008561 (-)
sf3b5 sf3b5 other downstream 1378975 9224876 ~ 9228884 (-)
G42967 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 1754065 8801243 ~ 8853794 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other downstream 1824061 8754914 ~ 8783798 (-)
trnag-gcc_1 NA other upstream 1092991 11708614 ~ 11708684 (-)
pwwp2b pwwp2b other upstream 1395308 12010931 ~ 12021468 (-)
tmem254 tmem254 other upstream 1529217 12144840 ~ 12152522 (-)
nin nin other upstream 1819486 12435109 ~ 12465063 (-)
LOC113537616 LOC108263287,LOC108263288,LOC108262461 other upstream 1909013 12524636 ~ 12534215 (-)

Expression


Co-expression Network