si:dkey-275b16.2 (paox)


Basic Information

Item Value
gene id si:dkey-275b16.2
gene name paox
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16033250 ~ 16042031 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942577.2
GCCCTCTACAGACTCCCTGCTGCAGTATTCAGTACTTTATACGGCTCAGAGACAGGAAGATGGCTCTCCGTTCCAGTGTTGATGCGAGAGTCCTTATTATCGGATGCGGGATTTCAGGAGTCGGTGCTGCGCAGAAGTTAATCAGACAGGGCTTCCGAAATGTCCGCATTATTGAAGCAACGTCAAGAAGCGGAGGAAGAGTTAAAACTGGCAGACTGGatgGTAAAATTATAGAAATAGGTGCCAACTGGATCCATGGTCCCTCACAGGAGAACCCAGTGTTTCGCTTGGCCTCCCAGTACCAGTTACTTGATGAAGAGTGCATGTCTGAGGAGAATCAGTCTGTGGACATTGGTGGTCTTCCGCCTTTGCTTTCCACCTGGCTTTCCAGCTCAGGCAAGAAGCTTGAGGCTGAGGTAATGGCACCTGCAGTGGAGGTCTTCTTGTCATTACTTAAGAAGTGCCAGGAGTTCTACACCAGTAGCGATGCACCCATGTCTAGTATGGGGGAGTTTCTTGAAAGAGAGGCTCTCCGGATCAGCAATGAAGAATGGAAAGAAGATGAGACTAGAAAGCTCAGACAGGCCCTGTTCAGCACACTGATGAAGCTTGAGTGTGGTGTGAATGGGACACACACGATGGATGATGTGGACCTTGGAACCTTTGGCATGTATAAGTCCCTTCCAGGGCTGGACTGCACTTTCCCAGGAGGCTATGATGGCTTAATTACACACATGATGAATGAACTGCCTAAGGACATTGTCTTATTTAATAAACCAGTTAAGTGCATTCACTGGAATAACATCCACAGTCAGTCAAGCTCAAAGGAAGGAACATGTCCTGTTACAGTTGAATGCATTAATGGAGAGATTTTTGAAGCAGATCATGTCATTGTTACCATTCCACTGGGCTATATGAAGAAACACCATGACACTCTTCTGAATCCTCCTCTGCCACAACACAAGATGCACTCCATCCAGAGATTGGGTTTTGGGAccaataataaaatattcttaGAGTTCGAGCAGCCCTTCTGGGATGAAGAATGTGAAGTTATCTTCCTCGTATGGGAGGATGAATATGATCTTCAGAATCATGTTTCTGATATGAAGACTGCCTGGATCAGGAAGATGTCTGGCTTCACTGTACTGAAACCCACAGAGAGGTATGGACATATTCTTTGTGGTTGGATTGCTGGCCATGAATCTGAGTATATGGAAACTCTGCCTGAAGAGGAGGTGCTGCACACTGTGACTCGCCTTCTTCGCAGATTTACagGAAATCCAACAATTGCACCAAAGAAGCTTGTACGGTCCCAGTGGTTCCATGATCCCTACACCTGCGGATCGTACTCTTATGTGGCGAAAGGTTGCTCAGGTCAAGATATCGATAACCTCGCCGAGCCTCTTCCACTCACAGGTTCAGAAGCCGAGCCCTTACAGGTGCTGTTTGCTGGAGAGGCCACTCACAAATCTTTCTTTTCCACTGTCCATGGCGCTTTACTTACTGGCTGGAGAGAAGCGAACCGTCTCATATCACACTACAATCCATCACCAAGGAAGGTCACTGCAAATCTGTAAAGAGTGaactctgtgtttgttttaaagagATGCAAATGATATACTGATAGGATAAAAAAAGATCCCTCTATCTTTGAACATCAGTTGTAATAAGAAGGTTTATCATTTTAAGTGGCAAGATTACTTTCAACCTTCTATTCTTTGTCCGATAGCAGCAAAAAACACCAATccatctgaatttttttttattttattattattatttttttacatattagaCAAATtatgaaactaaaataaaaattttaaaaaaatcagggtTTATGATCAAATAATTTCTGAGCAGTTAATTTGATTGAGTGGATTTGTCAATGTGCAGAAACAGTTACTGTAATGGTTTTGTCACCTTCttttgaaaaacactggagagCTGAAAATCTCATTGGAAATTCTAACAGGTGAGTAGGATCACCATCACCTTTACCACGATCATGAGATTCAATAAAAGGTTTACGTCTCAGACCTCATGCAAACAGAGAGCACAGCAACAAGCAGATGTCAACAGGCAAACCTTTATTTTAATCACCAGTAACTGAAAATATAGGTTTTATTGACTAGATCTTCTAAGAGTTGATGCTAGTTATCTTCTATAACTCTAGCTGAGTGCTAGTAGTTTATAGAAACTATCTATGCAGTGGGCCCAAAAAGTCAATGTTTACTTACACCTTTCTGCATGTTACATCATCTAAGGCAGTTTGTCAGATATTTATGGTCTAGCATTGCTCAGTGACTTTGTGTTACTTCCTTCATGTATGCTTAGCTGATTTAGTTATAGGCTAGTGGAACAACTGCCATGTGTTGCTTGTCCTCTGTTacttcagctgtttaacaggataaaaaaaaggggggggggagGATAAAAATGTGTGGtgttcctaatttgcatattctcAGAATTTAGTGTTGTTAATTAGGGTAAAATCTGTGTCCcagcacttttctgttgtgtaaTGCAGCACTTCTCAATCATTTTTAGTTTAAGGCCACCTTAACTATGGATGGATAGTGTGGATAGTTACAAGTGAGTCAGCACCAGCGGTCTGTGAAATTATGATTTGTGATTGGTTAGCACATATTTAATCTTAACAACATTTCATAACCTCTACTGTTTTTAAACACATACCACTCTTTATAGATTTACTAAATTGACAAAATGACTAAGTAGAGATACAACTTGGCACCCTGGTTTGAGAACCATTGGGTTAATGACTTTCACtgtgtataattattaataatatgatgaataattattattactcagtacagaaaaaaaacagtggtcaCCAGCATACAAGTGACTAACAAATgcctaaaaaaagaaacaattatttaattatatataaagacTAAAGCTGTTAAATGATCTGTCTTTTATACTGTTTATGATTCTTTGTTGACAAAATGAATGTAACTGGACTTTCATTAAAACCCcacaaatatgacaaaatattgGTGATACAAACTGTTTGATTGTTTCAGCATTTTAGGTTCCAGTGTCTACCATGAAGATATTATTGTTTTTCcagattctttctttttgaatgtCTACTGCAGAGCAATATTTCTGTGgtaaattaaacaaacacagttTTCTTCTTACTCTGAATGCATTTGATCAGTCAGGAGATGATGGGTATCTAAGGTTTGCttatttagttttgtactggagctacaagCATAATGTATCTTAAAGTAAGAGACAGCTTTtctagttgtttttttctgatttgtttgacTCTTTATGTATGACCATGATTCCTGTTTCATGTCATCTTCTGGGTGCGTTGTATGTAATGAGAAGGATGTGCCTTTTCCTATAAGTCCTCTTGTCTCTCCtccattttctcttcttctctcaatcctttcactctttttttaacagctttaaaaaaaaacactaaatactGTAATGATCTGTGAGATCTCAATAAATAGTCTGTAAAA

Function

symbol description
paox Enables polyamine oxidase activity. Involved in polyamine metabolic process and positive regulation of spermidine biosynthetic process. Predicted to be located in cytosol and peroxisomal matrix.

NR:

description
peroxisomal N(1)-acetyl-spermine/spermidine oxidase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00308 PAOX; N1-acetylpolyamine oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942577.2 True 3524 mRNA 0.39 7 16033250 16042031

Neighbor

gene id symbol gene type direction distance location
wu:fj13e08 LOC108262408 coding downstream 470 16027136 ~ 16032780 (-)
zcchc24 zcchc24,LOC107564348 coding downstream 7948 15992214 ~ 16025302 (-)
LOC113544337 LOC108263461 coding downstream 212242 15813565 ~ 15821008 (-)
ppa1b ppa1,ppa1b,LOC107668792,LOC107708308,LOC107588733 coding downstream 243144 15782599 ~ 15790106 (-)
sar1ab sar1a,sar1ab,LOC104930554,LOC103355135,LOC105021427,LOC107588735,LOC107668793,LOC107708324 coding downstream 251086 15778870 ~ 15782164 (-)
rassf4a rassf4 coding upstream 3304 16045335 ~ 16076953 (-)
tmem72 tmem72 coding upstream 37919 16079950 ~ 16162197 (-)
LOC113545059 NA coding upstream 151296 16193327 ~ 16205453 (-)
wdfy4 wdfy4 coding upstream 180335 16222366 ~ 16267885 (-)
mapk8a mapk8a,LOC108263675,LOC108443371,LOC107707207,LOC107673914 coding upstream 267398 16309429 ~ 16320815 (-)
G47213 NA non-coding downstream 19906 16011570 ~ 16013344 (-)
G47160 NA non-coding downstream 286476 15744540 ~ 15746774 (-)
G47158 NA non-coding downstream 299171 15733833 ~ 15734079 (-)
G47130 NA non-coding downstream 335836 15697078 ~ 15697414 (-)
LOC117596835 NA non-coding downstream 359792 15619605 ~ 15673458 (-)
G47359 NA non-coding upstream 229239 16271270 ~ 16272531 (-)
G47599 NA non-coding upstream 634019 16676050 ~ 16691599 (-)
G47731 NA non-coding upstream 723678 16765709 ~ 16767510 (-)
G47735 NA non-coding upstream 746488 16788519 ~ 16788729 (-)
G47882 NA non-coding upstream 966809 17008840 ~ 17009049 (-)
c3h10orf53 NA other downstream 616767 15412913 ~ 15416483 (-)
sdhaf4 sdhaf4 other downstream 1248497 14779856 ~ 14784753 (-)
ccdc85a ccdc85a,LOC107588679,LOC107716311,LOC107585341,LOC107673962 other downstream 1841007 14181891 ~ 14192243 (-)
csgalnact2 csgalnact2,LOC107559332,LOC107666416 other downstream 2597764 13429997 ~ 13435486 (-)
slka slka,slk,LOC108263227,LOC107666433,LOC107725454,LOC107601868,LOC107743590 other downstream 3002054 13005486 ~ 13031196 (-)
zdhhc16a LOC108263271,LOC108443446 other upstream 402665 16444696 ~ 16456255 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other upstream 937100 16979131 ~ 16982729 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other upstream 1429156 17471187 ~ 17476092 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other upstream 1519373 17561404 ~ 17574422 (-)
col13a1 col13a1 other upstream 1536147 17578178 ~ 17661419 (-)

Expression


Co-expression Network