adra2c (adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202)


Basic Information

Item Value
gene id adra2c
gene name adra2c,LOC107552592,LOC107671617,LOC107556512,LOC107712015,LOC103033245,LOC107752971,LOC107674202
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7907228 ~ 7909974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942712.2
agagagagagagagagaggatgctgAGGAGAGCAGAGTCGGTGGATAGCTAGTAGGGCGCGTGGAGCACTGTGTCCACCGGTGACGGTGATATGCATGATACCATCCACAGAGTaactctttttaaaataataataataataataataataataataataatggactAACTGGAGTAAGGAATTCTGCGCGGAAGGAGAAAGCGGAGACGGGAGCGAGATGAAAGTAACGCACAGACAGAAGAGGAGGAACGCGGGGAAAACGGCTACCGCGCGAGCCACAAGGGACGTCGGGAATACAGCGGTGCGCTGCCTTTACGCTTAAAAAGACATCCACTAAGGATTTcccaacaaacaaaacaaagcaaacaaacaaaaaaacagtcctgccTCAGAATGGATAACTTGAGTTTTTTCAGCGGGATGGACTATGCCAATGTCACTGGGAATTTTACCAGTCGCTACACTCTGGCCACTGTCATAGGACTCGCCGGGTTGGTAAGCTTCATCATTTTGTTTACTATAGTTGGAAATGTACTGGTGGTGATCGCGGTGCTGACAAGCAGAGCGCTCAAGCCACCCCAGAATCTTTTCCTGGTGTCTCTGGCCACTGCAGACATCCTGGTGGCCACACTCATCATGCCTTTCTCTCTGGCAAACGAACTAATGGGTTACTGGTTCTTTGGGCAAGTCTGGTGTGATATCTATCTCGCACTGGACGTCCTCTTCTGCACATCGTCCATTGTTCACCTGTGTGCCATCAGCCTAGACAGGTACTGGTCAGTAACGCAGGCAGTGGAATACAACCTGAAGCGCACGCCACGCCGAGTGAAGGCAATGATCATAGTGGTGTGGCTGATCTCGGCTGTGATCTCCTTCCCGCCACTCATCTCCATGGACCGGAGCAGTGAAGGCGGTGAGCGGGAGCCACAGTGTCAGCTTAATGACCACACGTGGTACATCCTGTACTCCAGTATTGGCTCCTTCTTTGCACCATGTCTCATCATGATCCTTGTCTATGTGCGCATCTACCAGGTGGCCAAAACACGCACTCGGAACATGTCAGAGAAGCGTCATGAGCCGGAAGAAGCACCACGCCTTGAAAACAGTCTGAGCCGAGACGACTCCGGCCGGCAGAATGGTCACTGTGCATCTCCACCTCAGCCTGTTAATAAAAAACCTTCCGAGGATGAACCTGATGTGGAACTGGATGACAGCAGCTCCTCAGATGAGAAGGCCAAGCCGCCACGCCGTGAGTCAGCAGCAGGCCGGAGAGAACGCCGGACCAGCCGCAAGAACAGCTCCAGCTCCAAGCACTCGAGCCGCAAGTCCCGTGCAAGCAGCAAGTCCCTGGACCTGTTCTCCTCCCGCAGGAAGAGAAGGAGCACCATGTCCAGGAAGAAGATCTCACAAGCCCGTGAGAAGCGCTTCACCTTTGTCCTGGCTGTGGTCatgggtgtgtttgtggtctGCTGGTTCCCGTTTTTCTTCAGCTACAGTCTGTACGGAATCTGCCGGAAGCCTTGCGAGATCCCTGACCCTCTCTTCAAGTTCTTCTTCTGGATTGGCTACTGCAACAGCTCCCTCAACCCTGTTATCTACACCATCTTTAACCAGGACTTCCGCAGAGCCTTCCATAAGATCCTGTGCAAGTCCCTGAAGAGATCTTTTTAGAGGAGCATGATGGTTGGGTGGTCCTAAGGGCACAAACACCAGGTTCACCTGACAGAAAAGCCATGGATGTTTACAAGAAATAcatttgtactgtattttgGCAGCAGCACTATTCAAACGCCAACTGTCCCTCGGCATCAATGCCTTGACAATCTTCCCACAACATAGATATTAATGATGATCTGTTTTATTGATTAAAGCACTGAGCTCTGTCAGGACGGCAGCTGTAGTCTGTCAGTTCATACAGTAGCAAGGTCCTTCAAAAAACGCCCACCTAAAAGCAGCGACACTGTACTGTGTTTGCGGAAACAGACTTATCTTAATTACAGCCACAGGCACTTGTGCGTTACTAAGAGACATATTTATGATCAGTTTGCACATATGGCTTTCATCTTTGGGACTAGAGGGCTATGTAACATGAAAGGTCATTTCCTTTTTAACTGGAGAGATATAATATGAAAAGGGGAAATTACGGGACTgcatattgtttgtttgtttgttttattcagcaGACAAAAGTGGACATTGTTTAGTTAGGGAATAGTAGAGGTTCAGGCCCTACAGAGGGATATGAAAGGTAGATGCGATGTGTGTTCTCCTGCTATTGCAAGGCACCTCTGGAGGAAAGAAAATCCAACAGGGCTTTAAATTGCGTGCCATTACCTTAAACTGTCTGCAACTCACATGCttttaataaacactggatTGCTGCTGAAGCTCTATATGATATGATGCCATTACTGAAAACCATACTGATCACATATTTGCATTGTTACAACAAAGCTGTGTATGATTATATATAAGTATTTATAAGATTACTGTTCTTCATAATTTGTTTAGGAATTTCTGAACAACTGATGCCGTTCCGTGCCCATGCTTGTTGGTTGTATCATATTGTACTATGGCACTGTATATGACGACACTGTATGATATACATTACAAAGGGCAAAgccatttttattgtttcttttttgtatgtCATGAAACTTTTTGCCCTACCTGTGTGTTGggctatgatttttttttttctggctccGCCTTCTTGTGATATATTTAAATTGGCCAAACCGGTCAC

Function

symbol description
adra2c Enables alpha2-adrenergic receptor activity. Involved in adenylate cyclase-inhibiting adrenergic receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; optic tectum; ovary; and torus lateralis. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human ADRA2C (adrenoceptor alpha 2C).

NR:

description
PREDICTED: alpha-2C adrenergic receptor-like

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG:

id description
K22814 Octalpha; octopamine receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942712.2 True 2747 mRNA 0.47 1 7907228 7909974

Neighbor

gene id symbol gene type direction distance location
hmx1 LOC108262852 coding downstream 77682 7826634 ~ 7829546 (-)
hmx4 LOC108262851 coding downstream 81752 7823130 ~ 7825476 (-)
zgc:153642 NA coding downstream 191327 7702652 ~ 7715901 (-)
clgn clgn,LOC107674239,LOC107737082,LOC107671330,LOC107556507 coding downstream 261153 7630169 ~ 7646075 (-)
si:ch211-113e8.3 LOC108262753,LOC105903925 coding downstream 523065 7361915 ~ 7384163 (-)
LOC117596360 NA coding upstream 143520 8053494 ~ 8069324 (-)
dok7 dok7 coding upstream 173077 8083051 ~ 8123270 (-)
htt htt,LOC107679870 coding upstream 310625 8220599 ~ 8270117 (-)
trnam-cau_1 NA coding upstream 557010 8466984 ~ 8467055 (-)
trnam-cau_2 NA coding upstream 558062 8468036 ~ 8468107 (-)
G42426 NA non-coding downstream 86367 7820650 ~ 7820861 (-)
G42401 NA non-coding downstream 212735 7693214 ~ 7694493 (-)
G42400 NA non-coding downstream 216201 7690711 ~ 7691027 (-)
G42397 htra3a,LOC108263851,LOC108434764,LOC107674193,LOC107752916,LOC107556529 non-coding downstream 219539 7687297 ~ 7687689 (-)
G42395 NA non-coding downstream 225798 7680820 ~ 7681430 (-)
LOC113544822 NA non-coding upstream 67167 7977141 ~ 7979763 (-)
G42642 NA non-coding upstream 279761 8189735 ~ 8190276 (-)
G42650 NA non-coding upstream 294223 8204197 ~ 8204405 (-)
G42665 NA non-coding upstream 389206 8299180 ~ 8299444 (-)
G42671 NA non-coding upstream 470366 8380340 ~ 8380715 (-)
maml3 maml3 other downstream 317565 7438904 ~ 7589663 (-)
lef1 lef1,LOC103361279 other downstream 702529 7161474 ~ 7204699 (-)
gab1 gab1 other downstream 2087715 5756017 ~ 5819513 (-)
lsm6 lsm6 other downstream 2679261 5203706 ~ 5227967 (-)
tmem184c tmem184c,LOC107742544,LOC107670728,LOC107654969 other downstream 3000989 4893902 ~ 4906239 (-)
rgs12b rgs12,rgs12b,LOC108443250,LOC107749922,LOC107679871,LOC107551217 other upstream 224667 8134641 ~ 8216551 (-)
trnam-cau_4 NA other upstream 560012 8469986 ~ 8470057 (-)
trnae-cuc_7 NA other upstream 560384 8470358 ~ 8470429 (-)
LOC113539440 NA other upstream 573329 8483303 ~ 8492983 (-)
zdhhc5a zdhhc5a,LOC108262777,LOC108412478,LOC107551501,LOC107730508,LOC107664565,LOC107746524,LOC107556824,LOC107674225 other upstream 844940 8754914 ~ 8783798 (-)

Expression


Co-expression Network