mrps26 (mrps26,LOC107678578)


Basic Information

Item Value
gene id mrps26
gene name mrps26,LOC107678578
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19252850 ~ 19254354 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942722.2
AGAGCAAGCACTTCCTGTGTGAAAGGTCTTGAACATGGCGACCTCTTGTCAGAGGCTCAATGTTACATAGCCGCGCTGTTTGGACTAGTAGCTCTGTTTATATTCCGTTGTGGTTTTGACTGCATGCGCCACATTAACAGGTGTTAATCTAACAGATTAATATAAGAGTTGAAAATGTTTTCGGCTGCAGTTCGGAGCCGGACTCCGGTGTGTGTCGTGCTGTCGCCTCGGTTCGGTGTTGTGGTTGAGAGTGTGAGGGGCAGGAAGTCTCGCACTGACCCCAAAGCCAAGTCCAAAGCGGGCCGCATCAAGACCCCGCCCCCGGTGGACCCTGTGGAGATGGTGGTGCTGAAGGAGCGCTACACTGAATATAACCTCATCATGAGGGCGCTCAGgttacAGTTTAAAGAGGAGATGCTGAGGAAGCGCTATGAGGAAGAGACCGGCTCTTTAGCGGAAGAGAGAGCCAAGCAGGAGGCTGAGGAACACAGAGGATTAATGGCCTGGAATGACGCAGAAAACCTCAGATTGCGAAAAATCCGTGAGCTGCGTGTGCAGACAGAGACTGAAGCTGCTgaacagaggaagaaagaggCAGCGATTTTGCGTCAACAAGAGCTTGAGAATTAcataaaagaaaaggagagagaaatcCTGCAGCTACAGGAAGAGGCAAAGAACTTTATTACCCTGGAAAATTTGGATCAGCGGATTGAGGAGGCATTGGACAACCCCAAAAACTACAACTTTGCTATAAATAAAGAGGGCCAAGTGGTCAAACGAACTGCGCTGCAATAAGAACCACTGATCAAAACATCAGGATTAAAGAGACTGAAAAATGATGCATGTTTATTTACTTCCGCTATCAGACCTATGTGACTTTAAGTGTCCACTATAAGGATGCTACTTTGTTTTCCTAAGTAAAAGTTAACTTGTGTTTCA

Function

symbol description
mrps26 Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS26 (mitochondrial ribosomal protein S26).

NR:

description
28S ribosomal protein S26, mitochondrial

GO:

id name namespace
GO:0005763 mitochondrial small ribosomal subunit cellular_component

KEGG:

id description
K17405 MRPS26; small subunit ribosomal protein S26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942722.2 True 942 mRNA 0.47 4 19252850 19254354

Neighbor

gene id symbol gene type direction distance location
si:dkey-33c12.3 LOC108263340 coding upstream 2428 19247018 ~ 19250422 (+)
si:dkey-33c12.4 LOC108263338 coding upstream 8977 19237356 ~ 19243873 (+)
cpxm1a cpxm1 coding upstream 51717 19190273 ~ 19201133 (+)
pdzd7a pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 187827 19046016 ~ 19065023 (+)
zgc:154058 zgc:154058,LOC108263524,LOC108441772,LOC102793226,LOC103041715,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC106613076 coding upstream 242203 18983106 ~ 19010647 (+)
rab11fip5a rab11fip5,LOC108263817 coding downstream 64471 19318825 ~ 19339637 (+)
cdc25b cdc25b,LOC108417292,LOC104960468 coding downstream 148578 19402932 ~ 19410091 (+)
ap5s1 ap5s1 coding downstream 158317 19412671 ~ 19426321 (+)
gfra4a gfra4,gfra4a,LOC107693311,LOC107568637,LOC107695017,LOC107733662 coding downstream 261967 19516321 ~ 19604187 (+)
ky LOC108263466 coding downstream 520393 19774747 ~ 19786571 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding upstream 49163 19202230 ~ 19203687 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding upstream 237276 19014191 ~ 19015574 (+)
G48911 LOC108263518,LOC108262933 non-coding upstream 278140 18970798 ~ 18974710 (+)
G48908 NA non-coding upstream 285073 18967406 ~ 18967777 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding upstream 541555 18708032 ~ 18711295 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding downstream 12191 19266545 ~ 19267589 (+)
G49157 NA non-coding downstream 40728 19295082 ~ 19295293 (+)
G49214 NA non-coding downstream 146297 19400651 ~ 19400883 (+)
G49316 NA non-coding downstream 360363 19614717 ~ 19617317 (+)
G49522 NA non-coding downstream 658467 19912821 ~ 19954595 (+)
grxcr1b LOC108263619 other upstream 35574 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 216206 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 340655 18902438 ~ 18912195 (+)
dlg5a dlg5 other upstream 1030800 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 2275821 16973682 ~ 16977029 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 1710 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 86996 19341350 ~ 19356098 (+)
pprc1 LOC108263826,LOC108421584 other downstream 1127992 20382346 ~ 20392601 (+)
G49862 NA other downstream 1320619 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 1771379 21025733 ~ 21118964 (+)

Expression


Co-expression Network