chst3a (LOC108262760,LOC108442959)


Basic Information

Item Value
gene id chst3a
gene name LOC108262760,LOC108442959
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15480527 ~ 15487523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942759.2
atcGCTTGTGAGCTCCGCCACGAGGGGCTTCATACCACGTGACTGCGCTGTACGCCTTCTCAGCACTGACACTACTTTGCAATTAGTCTCTGCAGCAACATGTGTTAGAGAACtggttttttaaatgtatttatttatttattagatcaTTTTCTTTTCCCTACAAGGATGTGAGAAGTTTTGGATTACCTTCCAGCTTGCTTGGATGCATAATATCTTCATACGTTTTTGCGTTAAAGTTTTAACCAGGGTTCATTTAGAAAacgtaaaaaaacaaaacaaaacagggtGTTAATCGAACAGTGGACGCGTTCAAGCAGAAGTCGGCTTGTAGTTTCACAAGTCTGACTTGTGAGAGCACGTGGAGCTTTCAGTGTGCGGAGAGCGCGCGTGCGGCAGCGCAATGAGCCATGAAACATCTCGCAGCGTCCAGAGGGTCTGAATGGAGAAAGGTCAACTATACGTCATGTCCTGACATGAGATGAACCTGAATAGCTACACATACAGACTGTGGAGAGATTTCCAAACAGAATCCTGTTCAAGAATGAGGAATAAATATGTTATCCTCATCATCTGCATTGTGGCCCTTGTCATCATTGAAAAGGAAAACAATATTATCTCAAGGGTCTCTGACAagctcacacacagacagacacaacaaACCCCAGGGCTTCCTTCATTCTTCAATGGCTCCAGTTTGGATGACAGTGAGATGAGTATAAATTCCACACAGCTTGTAGATCCATACCAGGCTGGTCATAAGCACATTCTCTTATTGGCCACCACTCGCACTGGATCCTCCTTTGTAGGTGAGTTTTTTAACCAGCTGGGTACCAACATGTTCTACCTGTTTGAGCCACTGTGGCATGTAGAGAGGACACTTTCGCAAGACACAGGGATCCCCAATTCAAACATCTCATCCATTGCGTACCGGGATGTGCTGCTAAGCCTATTCTTGTGCGACTTCTCGCTGCTGGAGAGCTTCATTAGCCCACCTCCTCTAGAGCATGTCACTCCAGCTCTGTTCCGCCGTGAGTCCAGCATGGCTCTGTGTGAGGAGCAGGTGTGCACGCCAGTGCAGAAGAATATTTTTGAGAGATATCACTGCAGAATGCGCCGCTGTGGCCCTCTCAACTTCACCTTAGCATCACAGTCTTGTCTGAGGAAGAAGCACAGGGCCATCAAGACGGTTAGGGTTCGGCAGCTGGACTCACTCCGTTTGCTACTTGAAGATCCTAGACTGGATATTAAGGTCATACACCTGGTGAGAGACCCCCGCGCTGTCCTGGCCTCAAGAATGGTAGCCTTTTCTAGCAAATACCAGACTTGGAAAAGTTGGGCAGCAAATGGAGAGGTACCCATTGATGATGAAGAAGTGAAACGGCTCCAAGGAAATTGCAATCAAATCCGCGAGTCTGCCGAGCTGGGCTTGAGCCAACCAGATTGGCTGGAAAATCGCTACATGCTTGTGCGCTATGAGGACATCGCCAGATACCCCATGCAGAAAGCGGCTGAGATGTACAGATTTACTGGAATCCCATTCACATCACAGGCAAGGGAATGGATCATTAGGAACACACATGCTTCAGAGGTTGCCAGTGGAGTGTACTCTACACAGAAGAACTCTTCAGAGCAGGTAGAGAAGTGGCGTTTCAGTATACCCTTCAAATTAGCCCAAGTTGTGCAAGAGGTTTGTGGGCCGACTATGGAACTATTTGGATATCGATTTGTTGACAGTGAGGAGACACTAGTCAATAAGTCTATTAGTTTGCTTGAAGAGAAACAGTTTAATTTATCATATGTTACAGATTTTAACTCATAGTTTTAGTAGGAAACTAGTGTTCTAGATTTTAAACAGAGCAGTGAATGTATTTCAAATGCATGTATACCACACTGGAGCACAGATGTTGTATGCCTTCAGCGCTTACCTCATGGTGTAGCTTTAATCAAAGTGCATTCAGTTTGGTTCATCTAATTAAGATATttgaatgattaattaattgtatttgCTGCTTGTGTTTGAAAAGAGATTTAATTTGTATAAGTAAATTAGGTTGTTGTTTTTAGTCCTGGAGACATTTTTAGCCAAACATGTTTACCCAAgttgtttttgtgtcttttataGTTTCTATTGAAATTTGGTGATGCTGGACAAAACTGTGTTCTTAAAcaacataaatgtgtgtgtttactgtttgtGTTCTGAACACAAAATGAAGTCAAAGCCAGAGTAtgagacttttgcacaagaCTAAAGGATACTAGATACAATTTCAAAGCAGGAACTGTTAAACAGTTAATAAGGTGTAATTATAATAAGTCTTCCCTTAAGGCAATTGTTATATAACTTTTGGTTTCTTGATTTCTGGTTTCTGTTTTGCCACAAAAAGACAGGCAAAGCACTGTTAACATTTGGGTAAAATGTGCATTATAGGGTGATTGGGTATATGTAAAATGGGGAGAATTGGATTATAGTGAAAGgaaaaggttaaaaaataatacaagaaGGAGGAAGGTTTAATAATATTAGAAGACAATGATCCAGGTACTTTGCCAAAGGAAGACTGGATTTTTGATCTATAAATATAATGCTAgctcttttcattttaattacattaaagaGTAAATTGTAATACAAGTCACACAATATAAACCAAAAATCTACATCTGCCTGAAGGTCATGGCTTATTACCAATTGACAGTACTTG

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 3-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01020 CHST3; chondroitin 6-sulfotransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942759.2 True 2708 mRNA 0.41 3 15480527 15487523

Neighbor

gene id symbol gene type direction distance location
lrit1a LOC108262901,LOC108442250 coding upstream 29647 15447423 ~ 15450880 (+)
ogdhl ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740 coding upstream 67137 15388496 ~ 15413390 (+)
parga LOC108263327 coding upstream 94133 15355817 ~ 15386394 (+)
myofl LOC108263542,LOC108442891 coding upstream 126114 15325232 ~ 15354413 (+)
unc5b unc5b,LOC108263852 coding upstream 158480 15259363 ~ 15322047 (+)
pax2a pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 coding downstream 102595 15590118 ~ 15625846 (+)
cuedc2 cuedc2 coding downstream 185912 15673435 ~ 15677449 (+)
dnajb12a LOC108263659,LOC108443064 coding downstream 235358 15722881 ~ 15730701 (+)
spock2 spock2,LOC108262742,LOC108443083,LOC107668819,LOC107673954 coding downstream 258930 15746453 ~ 15773703 (+)
pald1b LOC108263458,LOC108443100 coding downstream 311705 15799228 ~ 15812772 (+)
G46849 NA non-coding upstream 6657 15473201 ~ 15473870 (+)
G46833 NA non-coding upstream 60885 15419029 ~ 15419642 (+)
G46765 hps6 non-coding upstream 396217 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 465346 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 468538 14965906 ~ 15011989 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 223614 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 406058 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 545781 16033304 ~ 16035339 (+)
G47224 NA non-coding downstream 616313 16103836 ~ 16104050 (+)
G47265 c3h10orf71 non-coding downstream 705172 16192695 ~ 16203524 (+)
borcs7 borcs7 other upstream 506459 14972568 ~ 14974068 (+)
cgas NA other upstream 1112427 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 1193985 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1979477 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2446177 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 305883 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 583191 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 637104 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 746991 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 797599 16285122 ~ 16308898 (+)

Expression


Co-expression Network