LOC113544150


Basic Information

Item Value
gene id LOC113544150
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5677180 ~ 5689962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942811.2
CCCAAGCTCAAAGACATCTTCACTTCTACAGAGCATAGTTATACTGCAGTCATCAGAAGAATAAAGCTTTAAGtgttgatgatgatgaccaCAAATCTGCTGATCAAGTCATTGATCTGTCTATATCTGACAATATTCCTCATGACAAGTCAGACTCTGGCTTTTATGTCTTTGTTGTCAAAATCCAAGACACATCAGGACATAACTCGTGATGCAATTTTACAGACTACAGTTGATATCTGCAGATCACAAGCACTCAAGAATggaaaagtttttgttttgCCAGTCCTACTGACAGTAGCAACAGTGACAGAAGCTTGTCAATCATCCGATTCAGCCAAAGATTTTCAAAGCAGCATTAATGAGATAAATAAGAACAACGCCTTGGTTGATGTTCAACATTCCTTTACTGGAAGTTACCATTTTGACAATGAGGAGTTTTGGACTGGACGGGATCTTATTACTAAAGGAGTTTCTGCTGTCAAAAACCATGTAAAGCAGCAGAGGTATCAAGCTGCCCGAGAGGCACTTGGTAAAACCCTACACACTTTGCAGGATTTCTACAGTCACAGTAACTGGATTGAACTGGAAAATAGAGAACCCTATCCCAACCTGATTAAACCAGATACCATAATTAGCAACATAGCAGATTCTGAAACATGCAAGAGCTGTTATGGAGATGGCTGCCCATCAAACATCTTAGAGTCAGTCATTGCACAGCATCAACTAACATCAGGATACTTTGGCCAATCCAAACCAAAAGGAAAGTGCAGTCATGGAGGAGAAGCTGATCTATCAAGTTGGGGGCAAGGTGGCATAAATAAGGATGATTCAGACTCCAGCCACGGTTATCTGCATGAAGCAGCAGCATTGGTAGCCACTAATGCTACCAGACAACTACTGGATTACATTAAAGAGGCAGTTGGAGATTCTGAGTTTCTTAGACTACTGGGACTCGGCCAGACTTCAGCACTGTGTTTTGTAATTGACACCACTAGCAGCATGTCTGATGACATTGCCATGCTCAGAAAAGTGACTTCATCTATCGTTAACAGTAGAAAAAGCACTGCACCATTAGAATACATCCTGATGACATTTAATGACACTGATTATGGCCTACTTACAAGAACAAGTGATCCTAAGGTGTTTAAAGACCAAATCAATGCAATTGTACCTCGTGGTGGAGGAGATGATCCTGAAATGTGTCTCTCAGGACTGCAGCTCGCCCTCACTGGATCTCCGCCGCGCACTGAGATTTTTGTTTTCACCGATGCTGATGCAAAAGATAAATGGTTGACAAGCACTGTGCAAGCACTGATTGAGAGAACAAAGTCTGTAGTTAGCTTCATAATAGCTAACTCCGATAGCTCTCGGGGTCGCAGGAGTGCCGAGCCCGTAGATGACCAACAGCAGGTCTCCCCTCAGCCTTTCAATGTACAGGTCTACCAGGACCTGGCTCAGGCCTCAGGGGGCCATGTAATTCAGGTCAACAACGCAACACAAGCTTCAAACATCATTGCAATTACCTCCAAATCTACAATGGTCACTCTATTTCAGGCTGTAAGAAACCCACCAAAGGCTGAAACATTTTCAGTCTTCGTGGATTTTTCTGTGCAAAGTCTGACAATTTACATCACTGGCAACTCTCCAGATTACACCATCACTAGTCCCACAGGAGTCTCACAGAGCTCCACCAAACTGCACAGCAGTGAGACCTTGTGGCCTATTCAGAGAGTTGGTAACCTCGACACTGTGCAGCCAAATGAATTAGAGCAGGCTGGACTCTGGAAGTTCAGTATAAACTCAACATATCCCTACACCATCAAAGTTGTTGGTCAAAGTGGGGTTGACTTCCTTTTCGACTTTGTAGAACTTTCCCAAGGGCTTCATTCGAGCTATTCTGTATTAAACAGCAGGCCTGTAGCAAACACCAGTATCAACCTGTTGCTGTCCATGGTTGGTGGGGACAATGTGAGGCCTACAGAGTTGTCTCTGGTCAGAGCATCAAGTTCAAACTCTTTTAATGGGATACTAGAAGAGTTAGCAAGTGGGCAGTACTTGGTGTCCTTCAACAGCATCCCAGCAGGAGAGTTTACTGTTCGTGTGGTTGGAAAGGCCAGCTTCTTATCAAATGTGGTCTTGAATTTTCAGAGACAGTCAGCAACTCGGTTCCAAACATCAAGACTGACTATCACTACTGAACCTTTTGAAACAATGGAACTTGGAAAAGAATTCACTCTGCCTTTCACAGTTGCAACCAATGGCTCTGGAGGAAGCTTTAATATCAGTGTCATCAATGATCGCAATTTTGACACACTCTTTAACACATCCTTAACTCTCGAGAGTGGGGGCAGTGCGAATGGTATAGTGATTCTGACTGTCCCTACAAACACTTCCTCTGGAACTGATGTCACTGTGACGATCCAGGCTGAAGCAGCTGATGGAAGTGACTTCAATTACATTGTGCTACGTCTTCTTGTTGTTCCTCCGgTGAGAGATTTCTTCCTTCCAGTATGCAAGGCAGTTAACATTAAGGCTGACTGCCCAGGCGATTGCAGCATGTCGTCATGGTACCTCACTGCCAACGTGACTGGTGGATATGGATCAGATATTCCAAGTGTGAGAGTCCTCCAGGGCAATGGCAACCTCACCATCACCAGCGTGCTCAGTGACACAGGCATGGTCGTCACTACGGCAGTCTTCAGCTCATCTTGCTGTTCCCGAGACTTAGAACTGGTTGCTGTGGATGCAATGGGAAATGTTGCCACCTGCTTCAAATCTCTGAGAGCTACAGCTGCACCACGCGTCCTCACTTATggtgcagaattttttttgatTTTGCCAGTTTGCCTTTGGCTTAATATGGGAGTCTCATTTTAACAATTGATGTAGCtctaagaaaaacaaacaaacaaagctcCATTTATCTGAATTTCAACAATATCTGCATATTTAGGCCTACATACTACTTGTTCAGTAATGCTTTTATACAGTATGAGGAGCAAACGTAtaaatgaaatacacacacatcaatcttcaataaatgtttttgaTCTATATCACTATAAGTCTGCATGTATGTAACTAGAAGGAAATTCTACTTGCCTAATACACTCAGTAATTTAAAACTAAACTCTACTCAGAGTTTAAACTCTGAATGTAatactgtttaataaattttatatatatatatatataatataatgtcataaattaaaaaagcactgaatgtattatttttagttGGAGggtctgttattattttatgcGATTATTTCAATGCACATAgatattcattaatttaatgtCCATGCCATTAATCATTGCATACTCATGTAATTTTCACTTTTATACCACTCATTTAAAATATGAGTAAAATTCTTAAATTACTGGGTAATGTCATGCACATGCAATGTAAGCTTATAGTAGGCTTATAGTAGGCTTACATGCAACATAGGTTTAAAAGATTTCAGGATCTGGTATGGAATTTATCTTGTTTGCAGTTCTATAAGGGATAAACAGTCTATTTAATTACCAAACTGTACTAAGagcttttactttttaattaaacctAACTACATGCCAGCACTTGAATCTACAGATTTACAGAGATTTACAGATGATGAGGGGATGTTACATAATGGGTACAAGGTATCTGAACCATGTATTGcattgtgtgtttaattttcctttttcctcaaaACTGTATGTTAATTACTGTCTATGTTTTAGGaattttttccttcattttcttgatttttCCCTTCTTTTGATTTGCTATGACATAAAATCTTTGCAAACACAAGCTTCATTTGAAATAATTAACTTTCACAGCATTGTTGAAGTcttgaatttgattggtcagaaagtgttgattgaAGCATGCaccattgtattttattccttccttacaATTCATTTAGGCTATTTAATGATTTAGAGAAGACCAAATAAACAGAGATGCACAAAAATCAGGTTAGATTCAGAATGAAGTTTTGGATCCCACCCTTCACGACTGATTTTACCTTCATTTTCAATATACAGTACTCTCCTAGGCTTATCCCAAGAGGTGTGTTTTCATACATCAGATTTCCAGAACATCAAATGATTGGAAGTCTTGCTCAAAAGAAATTGCTCATATTGCAGATAGGAGTAAATCTGTGCTTATCAGGGACATAGGTTAAACACAGGTTAATGAATGTGACCTTGGTCAGGATTATGAGGGTTTTTTGGGGGGGATACACACATTTACTGCAGACACCTTGTGTTAAGTTCAATCTGTAAAACATCATTTACAATGTGCATCAGATGTGTTTGTGATAGACATAGATTTGAAGTGCTCTCATGTCAACACACTATTACTGTGCTGCAATGTAAAGAGATGGCGAGGTGTTGTGTTAATAAGTGGGTAAGTATTTAGATTGAATGTGTTAAATGTGGCTGAGAATTCCACAGCAGAGAGTAAGTAAGTACTTAGACACTGTCAGACAGAGAATACCAACAGAGTTTATTGTTATATCATCCTGCTATAACTTGAAAAGTTTGACTGTAACTGGTTAAACATGATCAAAAACTTATATTATGTCCATATTCAAGTGTCATTATGATTTATATAATCTGAATTTCCGATGTTACTGTCAATCAAttgtttaatgtattaaaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942811.2 True 4665 mRNA 0.39 16 5677180 5689962

Neighbor

gene id symbol gene type direction distance location
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding upstream 3052 5636867 ~ 5674128 (+)
si:dkey-27h10.2 NA coding upstream 50703 5599885 ~ 5626477 (+)
prmt9 prmt9 coding upstream 784801 4882996 ~ 4892379 (+)
tnip2 tnip2 coding upstream 1176796 4495632 ~ 4500384 (+)
scpp1 LOC108262830 coding upstream 1189905 4483548 ~ 4487275 (+)
LOC113542501 LOC108263484 coding downstream 7244 5697206 ~ 5716038 (+)
LOC113542496 LOC108263485 coding downstream 28735 5718697 ~ 5729662 (+)
LOC113542482 NA coding downstream 43485 5733447 ~ 5751032 (+)
smarca5 smarca5,LOC107703846,LOC107594298,LOC107757072 coding downstream 153604 5843566 ~ 5857230 (+)
rnf150a rnf150,LOC107729769,LOC102313262,LOC108251603,LOC107598546 coding downstream 575968 6265930 ~ 6295477 (+)
G41049 NA non-coding upstream 341615 5333384 ~ 5335565 (+)
G41032 NA non-coding upstream 354789 5270315 ~ 5322391 (+)
G41026 NA non-coding upstream 369062 5258551 ~ 5308118 (+)
G41031 NA non-coding upstream 406985 5264901 ~ 5270195 (+)
G41019 NA non-coding upstream 450752 5224948 ~ 5226428 (+)
G41232 NA non-coding downstream 128586 5818548 ~ 5819447 (+)
G41299 NA non-coding downstream 186186 5876148 ~ 5876422 (+)
LOC117596795 NA non-coding downstream 549405 6239367 ~ 6262431 (+)
G41331 NA non-coding downstream 570643 6260605 ~ 6263303 (+)
G41345 NA non-coding downstream 613935 6303897 ~ 6304105 (+)
znf827 znf827 other upstream 319320 5263582 ~ 5357860 (+)
G41047 NA other upstream 335430 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 905576 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 1842554 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 3585837 2025488 ~ 2091343 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 205469 5895431 ~ 6228685 (+)
G42075 NA other downstream 1513988 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 1930583 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 1959236 7649198 ~ 7671410 (+)
G42685 NA other downstream 2775785 8465747 ~ 8466312 (+)

Expression


Co-expression Network