scpp1 (LOC108262830)


Basic Information

Item Value
gene id scpp1
gene name LOC108262830
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4483548 ~ 4487275 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942823.2
ggcTGCTGTATGTGTAGAACACAGGAATGTCTAGCAAAATGTCAATTGCCTTACTCCATTAagttcaaatcacacactgcctGTGTTTCATACTGCGTCTGTATACAGTAACACACATAATTAGTATTCAGAGcatgaaagggaaaaaaaaactgcccgCAGAAAGTTACCACACAAAGTTATTATGGCTTCATTAtacacttcctgtgtgtggGATGAGACTACGGGCATGCTCAGTGTGCACTCTCCACACACCCTATAGTTTACTGTCttaaaatagacagacagaagcgGAAGTAGAGGGACGGCATACAGTATTctatgtctgtgtttgtgtgtgtgtgtttttgtgcgtgtttgtgtgtgtgtgagtgcacgcATGCCCCCACAGCGGTCATAAATGGTAAAGCTGAGCTGGCAAGGAGGAAGTGATGTGCTCACCTTAACGTAAAGCTAGGCAGATAAATAGCAGCTCTCTGCATCCCTGACTTCAGCACAAGTGTTTAGTCCACACTTTCATCGCAGCAGGACCAGAAGACGCACCTGACACTTACTGGGATTTACACAGCACATACTCAGAGAGAAAGCAGAATGAAGCTCGCTTTTGTGATTCTCTGCCTGCTCGGAGCTGCCAGTGCAAATCCAATTTTGCACAAAGTTGCCATGGATATGATGGAGCCTGCATCTAACTCTACCTCCTCGATGTCTGAATCTACTGAAGAAACCAATGCCATAGACCAAGATAGCTCTCAGGAAAATACTTCCGAGGACACTACATCAGAATCTATGGAGTCAAAATCATCTGAGCAGACCACAGAAACAAGCCAAAGCCACTCACTGGAAGAGCGGTTTGGCACTGGAGAGGCTGGAATGACCGTCGATAACAGCCAAGGAAGCACAGAGAACATGCGCAAGAACTGGATTCGCGTCTTCAGCCCCCAGGAGATCAGTTCTGAAGACAACAGCACGTCAGCCAGCCTGGCATTAGCTAGCAGCGAGATCAGCAAATCTGCGGAGAGCCAAGAGAAAAAATCCAACAGCATCAGCAGCAGTAGTGAGAGCAATGAGTCTACTGAGGGTCAAGGCAAAAATTCAACTAGTAGCAGCAGCAGCAGCGAGAGCAGCAAGAGCAGCAAGAGCAGCGAAAGCAGCGAGTCCATTGAAAACCTGGAGAAGAActccaacagcagcagcagcagcagtgagagcagcgAAAGCAGCGAGTCTATCGAGAGCCAAGAGAAAAActccaacagcagcagcagcagcagcagcagtgagagcaaTGAGTCGAAAGAAAATCAGCCGAAAGCTTCAGACAGCAGCAGCGAGAGCAGCGAGAGCAACAGCATCGAGAACAAATCAACGATCGACAGCAATGAGAACAGCGCCATGAAAAGCAGCAACAGCTCCAGCAGTGAGAGTCACGAGTCCACTGAGTCCACCAAGTCCACCGAAAGCAAACAGAGTCACTCAGACGAGTGCCAGCCTGGAGCCGACAGCCAGGACTGCGACAGCGACGAGTACGTCCTCCAGAACGTCGGAGACGACGGAGCCAGCGACCCGTTTAACGGCTTCCACGTGCCTGACAGCACCGAGCGCGAGGTCGCATTTAAGAGATGATCGAATGCATGTTGATATTCCGATTATTATTATAGCTAGCGGTAGTGACTCTGCTCTGAAATGTGCAGTGTGGAAATCCCTGGAGAGAAATATCAACAtgataaataaaggaataaaaattaCAGACCTATTAATGAAAACCAAagaataatgtttatatatatatatattaaaagatAATCTGCATTAAAAGCTATGTATGTTAGAGAATATTTGCTGTGTGCATTAAGGATACTGGTTTATTATTGAGGCTCATAATATCTAATTAATTATGTTATACCTCAGTGTTGGACAATCTGTAGCATGTTTTAATTGATATTTAGCCTCTGATTAAAACTACACTAAAGAATTTTA

Function

NR:

description
dentin sialophosphoprotein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942823.2 True 1977 mRNA 0.46 10 4483548 4487275

Neighbor

gene id symbol gene type direction distance location
hmgb2a hmgb2,hmgb2a,LOC107752228,LOC107670798,LOC102792727,LOC100707400 coding upstream 642686 3838726 ~ 3840862 (+)
hand2 hand2 coding upstream 677719 3802564 ~ 3805829 (+)
fbxo8 fbxo8,LOC107670846,LOC107752227 coding upstream 770712 3700579 ~ 3712836 (+)
hpgd hpgd,LOC107752225,LOC107552502,LOC107737128,LOC107676678,LOC107558775 coding upstream 815056 3644478 ~ 3668492 (+)
glra3 glra3,LOC106610166,LOC107670853,LOC106602381,LOC107752223,LOC106935306 coding upstream 841800 3572427 ~ 3641748 (+)
tnip2 tnip2 coding downstream 8357 4495632 ~ 4500384 (+)
prmt9 prmt9 coding downstream 395721 4882996 ~ 4892379 (+)
si:dkey-27h10.2 NA coding downstream 1112610 5599885 ~ 5626477 (+)
frem3 frem3,LOC107654895,LOC107550584,LOC107734585 coding downstream 1149592 5636867 ~ 5674128 (+)
LOC113544150 NA coding downstream 1189905 5677180 ~ 5689962 (+)
LOC117596893 NA non-coding upstream 52681 4427999 ~ 4430867 (+)
G40665 NA non-coding upstream 68752 4414586 ~ 4414796 (+)
G40644 NA non-coding upstream 194119 4284700 ~ 4289429 (+)
G40592 NA non-coding upstream 253926 4229392 ~ 4229622 (+)
G40591 NA non-coding upstream 255000 4228182 ~ 4228548 (+)
G40704 NA non-coding downstream 55334 4542609 ~ 4545083 (+)
G40804 NA non-coding downstream 182479 4669754 ~ 4670544 (+)
G40805 NA non-coding downstream 183592 4670867 ~ 4671470 (+)
G40806 NA non-coding downstream 184353 4671628 ~ 4671901 (+)
G40807 NA non-coding downstream 184857 4672132 ~ 4672444 (+)
LOC113545357 NA other upstream 648922 3831867 ~ 3834626 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other upstream 2392205 2025488 ~ 2091343 (+)
cdk2ap2 cdk2ap2 other upstream 2486283 1983647 ~ 1997265 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other upstream 3258947 1194219 ~ 1224601 (+)
trmo trmo other upstream 3294954 1165845 ~ 1188594 (+)
nr3c2 nr3c2,LOC107598757 other downstream 177041 4664316 ~ 4771604 (+)
znf827 znf827 other downstream 776307 5263582 ~ 5357860 (+)
G41047 NA other downstream 831259 5318534 ~ 5341750 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other downstream 1408156 5895431 ~ 6228685 (+)
G42075 NA other downstream 2716675 7203950 ~ 7221023 (+)

Expression


Co-expression Network