ogdhl (ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740)


Basic Information

Item Value
gene id ogdhl
gene name ogdhl,LOC108263326,LOC108442924,LOC107707496,LOC107683740
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 15388496 ~ 15413390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942885.2
AGCGCGAGTTCACGCGCAGGCCTCGTGCTTCCTGCTTTTCAGTCGTGCAGTATAGCGGTGCTGCTGCTGGCTGCACAGAGCTGCTGTGTGCGCTGTAGGGATCAGCAGGGTTTAGCACTGCGGGATTAACGGACACTCCACCTCGACTCAGACAGCAATACACTCCAAGTCGGTGCTGAAACGGACCTCTGTTCTTCGCATTGCCTTCCAAGgcAAGCATTAAGGCTGCTGGATGTAAATCGTGGGGATTTGGAGGCTGAACAGATATGAGTCGGTTTCGCTCCCTGGCCTCTCTCAGGGGTCTGTGGATGAGGGGTCGAGTGTGGGACCCTCACCGATGCTGTTCCTCTGGAACTCCCCTCAGTACTAGCTATGTGGAAGAGATGTACTACGCCTGGCTGGAGGACCCCAAAAATGTTCATGAGTCTTGGGATGCCTATTTCCAGAACGCCCAGGCCAACAGTCCAGCTAAAGAAGCAGGGGAGAGGCGTCCATCTGCTCTTCTCCAGGGTCGAGCCATGTCCCAGACTCCTGCAATGTCTCAGAAAGTGGTGCAGGATCACCTAGCTGTCTACAACCTTATCAGAGCCTACCAgATCCGTGGCCATCATGTGGCTCGGCTTGATCCTCTTGGCATCCTCAGAGCTGACATTGATTCTTTTGTCCCCTCGGATTTGATAACAACACTTGACAAACTTAGCTTCTATAGCTTGGATGAATCTGATCTAGACAAGACCTTCCGGTTACCATCGACAACATTTATCGGGGGTCAGGAGGCTGTACTTCCACTCAGGGAAATCATTCACAGACTTGAGGCATCATACTGTGGTCATATTGGTGTGGAATTCATGTTTATTAACAATATGGAGCAATGTCAATGGATCAGGCAAAAGTTTGAGACTCCGGGCATCATGAAATTTACTGACAGAGAGAAGAGGACCCTACTGGCAAGGCTGGTTCGCTCAACACGCTTCGAGGACTTTCTGGCTCGCAAATGGTCTTCAGAGAAGCGCTTTGGCTTAGAGGGCTGTGAGGTCCTCATCCCTGCTCTGAAGATGATCATCGACAAGTCTAGTGCAGCCGGCATAGACAGTGTAATCATGGGCATGCCTCACAGGGGTCGACTGAATGTCCTTGCCAATGTTGTCAGGAAAGATCTCGATCAGATTTTCTGCCAATTTGATCCCAAACTAGAGGCTGCAGAAGAGGGCTCAGGTGATGTGAAGTATCATCTGGGTATGTACCATGAGCGGATCAACAGGGAGACAGATAAGAACATAACTTTGTCTCTTATGGCTAACCCGTCTCACCTAGAGGCAGTGGATCCTGTCGTGCAGGGCAAAACTAAAGCTGAGCAGTTCTACAGAGGAGACAATGAGGGGAAGAAGGTGATGTCCATTCTCCTGCATGGTGATGCTGCATTTGCTGGTCAAGGAGTTGTCTATGAAACCTTCCACCTCAGTGAGCTTCCCTCATATACCACTCATGGCACCATTCATGTTGTTGTCAACAACCAGATTGGATTCACCACTGATCCGCGAATGGCACGCTCCTCTCCTTACCCCACTGATGTGGCTCGTGTGGTCAATGCACCCATTTTCCATGTCAACGCTGATGATCCTGAGGCTGTGATGTATGTGTGCAGAGTGGCTGCAGAATGGAGAAATACCTTTAACAAGGATGTGGTCATAGATCTGGTTTGTTACCGGCGCTTTGGCCACAATGAGATGGATGAACCCATGTTCACTCAACCTCTCATGTACAAGCAAATCCGCAAGCAAGAGCATGTGCTAAAGAAATATGCAGACAAGCTCATTTCTGAGGGAGTCGTTACTCTGCAGGAGTTTGAGGAGGAAGTGGCAAAGTATGACAAAATCTGTGAAGAAGCATACACCAGCTCCAAAGATGAAAAGATACTCCACATCCGTCACTGGTTGGACTCCCCCTGGCCAAatttttttacagATGAGGAACCGAAGTGTATGAGCTATCCTCCCACAGGGCTCCCTGAGGACATCCTGAAGCACATCGGCCAGGCTGCCAGCTCTGTCCCTCAGCAAGACTTCTCCATTCACAGTGGAGTGTCGAGGATCTTGCGAGGCCGCGCCGACATGGTTAGTAAGCGTACAGTGGACTGGGCTCTTGGGGAGTACATGGCCTTTGGTTCCCTGCTGAAGGATGGTGTCCATGTGAGACTGAGTGGGCAAGATGTGGAGAGAGGAACTTTCAGTCATCGCCATCATGTCCTGCATGACCAGGAAGTGGATAAGCGCATTTGTGTTCCAATGAACCATCTATGGCAGAACCAAGCTCCTTACACAGTGTGCAACAGCTCCCTGTCTGAGTATGGAGTTTTGGGCTTTGAGCTGGGTTTTGCTATGGCCAGTCCCAATGCACTCGTGTGCTGGGAGGCTCAGTTTGGGGATTTCCACAACACAGCACAGTGCATCATAGACCAATTCATCAGTCCAGGCCAGGCCAAGTGGGTCCGAAACAATGGCATCGTCCTTCTGCTACCCCATGGCATGGAGGGAATGGGCCCAGAGCACTCGTCAGCAAGGCCTGAGCGTTTCTTGCAGATGAGCAAGGATGACCCTGATCGCTATCCAGAATTCCCTGGAGATTTCGAGGTGGAACAGCTTTATGACTGTAACTGGATTGTGGTGAACTGCTCAACACCTGCTAACTACTTTCATGTGCTGAGAAGGCAGATCTTATTACCATTCAGGAAGCCACTAATTATTTTCACTCCTAAGTCCTTGCTGAGGCTCCCTGAGGCCCGTTCCAGCTTTGATGAGATGACCCAAGgAACTAAGTTCAAAAGAATCATACCAGATGAGGGTCCTGCATCTAAAATTCCAGGGGATGTGAAGAGGGTCATCTTCTGCACGGGCAAAGTCTACTATGAGCtagcaaaagagagaaaacaactCAGACTGGAGGATAGGATTGCAATTGTCCGATTGGAGCAGATATCACCATTTCCGTTCGACCTTATCAAGAAAGAAGTTGAGATATACAGCAATGCTGAGCTCATATGGTGTCAGGAAGAACATAAGAACATCGGTTATTATGACTACATAAGACCACGCTTCCTTAGTGTACTCTCTAACAAGAAACCAATATGGTACGTTGGCCGTGACCCTGCTGCAGCTCCTGCCACAGGAAGCAAATTCACACACCTGGCAGAGCTGAAGAAGTTCATGACCAGTGCATTTGACCTCAATGCATTTGTGGGCAAGAGCTTTTAATGCTGACCTACTTACTCTAAATA

Function

symbol description
ogdhl Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Predicted to act upstream of or within tricarboxylic acid cycle. Orthologous to human OGDHL (oxoglutarate dehydrogenase L).

NR:

description
PREDICTED: 2-oxoglutarate dehydrogenase-like, mitochondrial

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function

KEGG:

id description
K00164 OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942885.2 True 3274 mRNA 0.49 25 15388496 15413390

Neighbor

gene id symbol gene type direction distance location
parga LOC108263327 coding upstream 2102 15355817 ~ 15386394 (+)
myofl LOC108263542,LOC108442891 coding upstream 34083 15325232 ~ 15354413 (+)
unc5b unc5b,LOC108263852 coding upstream 66449 15259363 ~ 15322047 (+)
ly6pge si:ch73-28h20.1,LOC107673896,LOC107585320 coding upstream 228411 15157757 ~ 15160085 (+)
tacc2 LOC108263494 coding upstream 231753 15091830 ~ 15156743 (+)
lrit1a LOC108262901,LOC108442250 coding downstream 34033 15447423 ~ 15450880 (+)
chst3a LOC108262760,LOC108442959 coding downstream 67137 15480527 ~ 15487523 (+)
pax2a pax2,pax2a,LOC101463634,LOC107668824,LOC107588637,LOC107585307,LOC107716343 coding downstream 176728 15590118 ~ 15625846 (+)
cuedc2 cuedc2 coding downstream 260045 15673435 ~ 15677449 (+)
dnajb12a LOC108263659,LOC108443064 coding downstream 309491 15722881 ~ 15730701 (+)
G46765 hps6 non-coding upstream 304186 15079813 ~ 15084310 (+)
G46713 NA non-coding upstream 373315 15014123 ~ 15015181 (+)
G46638 NA non-coding upstream 376507 14965906 ~ 15011989 (+)
LOC113541837 NA non-coding upstream 762006 14617608 ~ 14626490 (+)
G46337 NA non-coding upstream 1000185 14388029 ~ 14388311 (+)
G46833 NA non-coding downstream 5639 15419029 ~ 15419642 (+)
G46849 NA non-coding downstream 59811 15473201 ~ 15473870 (+)
G47043 LOC108242967,LOC103387234,LOC106515310,LOC107375910,LOC107098787,LOC103476842 non-coding downstream 297747 15711137 ~ 15715524 (+)
G47071 NA non-coding downstream 480191 15893581 ~ 15896079 (+)
G47084 NA non-coding downstream 619914 16033304 ~ 16035339 (+)
borcs7 borcs7 other upstream 414428 14972568 ~ 14974068 (+)
cgas NA other upstream 1020396 14361367 ~ 14368100 (+)
slc24a3 slc24a3,LOC107693448,LOC107718828,LOC107716313,LOC107673935 other upstream 1101954 14213369 ~ 14286542 (+)
pcbd1 pcbd1,LOC107743500,LOC107601888,LOC107655445,LOC107559335 other upstream 1887446 13498048 ~ 13501050 (+)
si:ch211-223p8.8 si:ch211-223p8.8,LOC108262662,LOC108426807,LOC107552909,LOC107743613,LOC107552922 other upstream 2354146 13032050 ~ 13034350 (+)
eif4ebp2 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other downstream 380016 15793406 ~ 15797204 (+)
cxcl18a.1 LOC108263637 other downstream 657324 16070714 ~ 16075650 (+)
cxcl12a cxcl12 other downstream 711237 16124627 ~ 16134002 (+)
lrrc18a lrrc18,LOC108263378 other downstream 821124 16234514 ~ 16237542 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other downstream 871732 16285122 ~ 16308898 (+)

Expression


Co-expression Network