LOC113544242 (LOC108262960,LOC108429574,LOC103032979,LOC107594430)


Basic Information

Item Value
gene id LOC113544242
gene name LOC108262960,LOC108429574,LOC103032979,LOC107594430
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7142438 ~ 7149125 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942935.2
TTCCAAAACATAAGCGACAATGAAAGCACGAGTGACAGAAGCGTAAGCAGGGCACCGCCTGGAGGAAGGATTTAAATAGGTTTCTTTGAAAAAGAGAACTGAGATTTAGATGTTTAAGTGAGTTTCCGGAGTGTTGTAATGCGTCGCGGTGTTATTCGGTGTTAGGATTTGcttatattagctagctaacggtTAACAGGCTTTAGCATGGACTATCCTGATATCAAATAACGGTAAAGTCGTTATAATATGAGGTGTATACTATTTATAACAGTTTTGCATTGAGACTGCATTACTAGGATGTATTAGATCGTGTAGTAGATAGTGTATAGTAGTAGATAGTGGCCTCACCGGAAGTGATGCTTCACTCACAGTTGGAAGTTTTTTATTAAttcgttttttttaaatgttttatttatttttttatttttttatcgtGGAGGGTGTGTTTAGTAAAATGTGGCACGACGTCGAATTTCCCTCCGtgtcatttatatttttcactcttttcaTCATTATTGTTTTCTATCTGCTGAGACACTATCGACTACGTAAACACTTGTTTGTAAACATCCCCCCGGGTCCAAAACCACTTCCGGTTGTAGGGAACTTCGGCAGCTTGTTCGTGCCGCCGTTTATTCTGAAGCTGTTCGCGCGGAAAGCTGAAGAGTATGAAGAGAAGAGAGCAAGCCCACTTTCCCCGCAGGTGGGTTTGATGGAGTTGTCGAAGGTTTACGGTAACATGTACAGCCTGTTTGTGGGCAGTCAGCTGGTGGTGGTGCTGAACGGGTACGAGGTGATCAGAGACGCGCTGTCCAACCACGCCGAGGTTTTCTCTGACAGACCTGACATCCCTCTGATCACCATTCTGACCAAGCGGAAAGGCATTGTATTTGCTCCTTACGGTCCAATCTGGAGAAAACAGCGCAAGTTCTGCCACATGACTCTTCGAAACTTCGGCCTGGGCAAACTGAGTCTGGAGCCCTGCATCCACGAGGGATTCGCCGTGGTCAAGGCTGAGCTGCTGAAGCGAAACCAGGAGGCAGGAGGACAGGGGGTGGACCTGATGCCTTTGATCAGCAGTGCTGTGTCCAATGTGATCTCCTCGATCAGCCTGGGCCAGCGCTTCCACCACCAGGACGAGGAGTTCCGCACGCAGCTGAACCTCATGGCCCACGGTCTGGAGATCAGCATGAACAGCGCCGCCGTGCTCATCAACATCTTCCCCTGGCTCTACTACGTCCCCTGCGGCGTCTTCAAGCAGCTCCGCCGAGTGGAGAGGGACATCACGGCATTCCTGAAGAAGATTATAGCCAGGCACAGGGCCACGCTGGACCCCGAGAACCCCAGGGATTTCATCGATATGTATCTGGTGGAGATGCTGACTCAGCAAAAACCAGGTGGATCAGAGGAGGACGGATTCTCCGAGGATTATCTGTTCTACATAATAGGGGACCTGTTTATTGCAGGGACGGATACGACTACTAATAGCATCCTGTGGATGGTACTGTACATGTGTTTACATCCTGATGTCCAAGAGAATGTTCAGCGAGAGATCGATGCAGTAGTGGGACGTGGAAGGCTGCCGTCGCTGACTGACAAGGGCACGCTGCCCTACACCGAGGCCACCATCATGGAGGTGCAGAGAATGGCTGTGGTGGTGCCTCTGGCTATTCCTCACATGGCTTCCAAGACTACAGAATTCCGAGGGTACACTATTCCTAAGGGGACAGTCATCCTTCCCAACCTCTGGTCGGTCCACAGAGATCCCACTGTGTGGGAGAATCCAGATGACTTCAATCCTTCACGGTTTCTGGATGAACAAGGCCAGCTCCTCAGGAAGgaatattttattccatttgGAATAGGTCGGAGAGTGTGCATGGGAGAACAGCTGGCAAAGATGGAGCTCTTCCTGATGTTCACCAGCCTGATGCAGGCTTTCACATTCCGCCTCCCTGAGGGACATCAGCCTCTGTCCATGCATGGACGCTTCGGCCTCACGCTGGCTCCCTGtcgcttcagtgtgtgtgtgacgccACGcaaacctgaaacacacacaacatcagaAAATCACGGAGACACGGAGTAATGATAACGTTTTCTTTCCTAGCTACAATGGCCTTAATGCTTTTTAGGGCATTCATTCAAAAGAAGGTGAAGAGCTACAGTAGTGGAGCTGCTCCTAAAAATTCCAGCTGATTTTGATAAAGTGAGACTGTGAAACTGGTTTGAACCTCGGTTGTAAAACCAGCGGTTTGTACCAAATCATTTCACAGAATCAGTATACTGTTATACTAAAATTGTCCATAGTTTCtctattaatttttaatttcactttcaatttttgcactttattaatTTGAAAGTGTGTTCCTGATCATTTCAGAATCATAGTCTTAATATCATAATATCTTAATATCAAAATCATTTCACTAAATTGTGTCAGATTAGTTCACAGAATCAGTATACTGTTATACTAAAATTGTCCATAGTTTCTCTATTAATTtctaatttcatttttcagcttTTGCACTTTACTAATTTGAAAGTGTGTTCCTGATCATTTCAGAATCATAGTCTTAATATCATAATACTAAAAcagttcatttacatttcatacttttacattttgttttccagCTTTAGCACTTTCCTGTGGTCTGTGACCAGAATACTGTATTTTAGTAATTTTACTGAGTAAAACTAATTTCTATAAAATGAAAGAGGTGACAATGACATGGCAATACAacataattaatcattttgatTTCTCTCACTGAAcaatccatcaaattgtaaccAAATTAactgcagttttataaatataatctgATCACCTCTGTGAACTGCTGTAAGATCATTTTGAGGCGCAAGTGGCCTTAACAGCATTCAGAATTAATTTATAGATCTCAGATTTGTATAGAATGCaagtgaaattaaaatacaCAGGCACTAATGTGTTGTAGATGCCGATCAATGCATAAATACTACagtatttaaacatttctaaaagcTTCCTGATACGGTTTATCAACATATAATTTGTTATACATGAAACAAATGTAATTATGATTTGAATATAAGAATATGCTGCTAATCTCTTAATAACTGATGTTTTTGAAGTTacggttttaattttatatatatatatatatatataatatatatatatatatatataatgtctcTTTAGGGGATCATATGTGactgttaataaaaaaaggcattttCTGTTCTTTCGTGTTTCACACCTTTATTTGGCCActgaaataaatggataaaaaaaataaatctgtgtattgaAGTATGTACATATGAAATATCAGTG

Function

NR:

description
PREDICTED: cytochrome P450 2U1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07422 CYP2U1; long-chain fatty acid omega-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942935.2 True 3331 mRNA 0.42 5 7142438 7149125

Neighbor

gene id symbol gene type direction distance location
sgms2a sgms2,LOC107729360,LOC107675923,LOC107757011,LOC107594470 coding upstream 1528 7126787 ~ 7140910 (+)
tbck tbck,LOC107757006,LOC107675790,LOC107594431,LOC107729351,LOC107684277 coding upstream 224783 6844872 ~ 6917655 (+)
dkk2 dkk2 coding upstream 346930 6779406 ~ 6795508 (+)
papss1 papss1 coding upstream 394374 6718851 ~ 6748064 (+)
abcg2d LOC108261237,LOC108262954,LOC108262959,LOC108441148 coding upstream 442919 6681141 ~ 6699519 (+)
hadh hadh,LOC107594428 coding downstream 1160 7150285 ~ 7155500 (+)
LOC113541438 mcub,LOC108262756 coding downstream 142596 7291721 ~ 7315462 (+)
LOC113542004 LOC108263504,LOC108263505,LOC108263506 coding downstream 194161 7343286 ~ 7346567 (+)
LOC113541239 NA coding downstream 204943 7354068 ~ 7356693 (+)
LOC117596353 LOC108263508 coding downstream 207609 7356734 ~ 7358561 (+)
G41951 NA non-coding upstream 125513 7016704 ~ 7016925 (+)
G41857 NA non-coding upstream 173599 6951392 ~ 6968839 (+)
G41752 pkd2 non-coding upstream 439632 6662282 ~ 6702806 (+)
G41654 NA non-coding upstream 540275 6601912 ~ 6602163 (+)
G41653 herc3,LOC108263070,LOC108441136,LOC108441137,LOC108262885 non-coding upstream 543471 6598703 ~ 6598967 (+)
G42093 NA non-coding downstream 199034 7348159 ~ 7393784 (+)
G42098 LOC108262753 non-coding downstream 212075 7361200 ~ 7364931 (+)
G42208 NA non-coding downstream 272966 7422091 ~ 7422296 (+)
LOC117596850 NA non-coding downstream 324245 7473370 ~ 7475040 (+)
G42295 NA non-coding downstream 491810 7640935 ~ 7644922 (+)
inpp4b inpp4b,LOC107703845,LOC107657998 other upstream 913753 5895431 ~ 6228685 (+)
znf827 znf827 other upstream 1784578 5263582 ~ 5357860 (+)
G41047 NA other upstream 1800688 5318534 ~ 5341750 (+)
nr3c2 nr3c2,LOC107598757 other upstream 2370834 4664316 ~ 4771604 (+)
LOC113545357 NA other upstream 3307812 3831867 ~ 3834626 (+)
G42075 NA other downstream 54825 7203950 ~ 7221023 (+)
scoca scoca,scoc,LOC108263532,LOC107737083,LOC107674238,LOC103034491,LOC107556533,LOC107671340 other downstream 471420 7620545 ~ 7630140 (+)
naa15b naa15b,LOC108263533,LOC108434806,LOC107712022,LOC107671368,LOC107737080 other downstream 500073 7649198 ~ 7671410 (+)
G42685 NA other downstream 1316622 8465747 ~ 8466312 (+)
trnak-cuu NA other downstream 1320499 8469624 ~ 8469881 (+)

Expression


Co-expression Network